Wall clock time and date at job start Mon Mar 30 2020 19:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35613 * 116.99615 * 2 1 4 4 C 1.39139 * 119.88486 * 0.25115 * 3 2 1 5 5 C 1.36424 * 120.43497 * 180.25720 * 4 3 2 6 6 C 1.40906 * 120.18978 * 359.75038 * 5 4 3 7 7 C 1.41237 * 120.12232 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99617 * 334.53661 * 7 6 5 9 9 C 1.39855 * 120.00448 * 154.53484 * 7 6 5 10 10 N 1.30895 * 120.00199 * 343.01998 * 9 7 6 11 11 Si 1.86804 * 119.99935 * 163.01927 * 9 7 6 12 12 H 1.48499 * 109.47529 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47373 * 120.00418 * 11 9 7 14 14 H 1.48507 * 109.46972 * 240.00177 * 11 9 7 15 15 C 1.40615 * 119.76357 * 359.97438 * 6 5 4 16 16 C 1.38593 * 119.57198 * 0.02562 * 15 6 5 17 17 C 1.48332 * 120.09983 * 179.97438 * 16 15 6 18 18 C 1.39375 * 120.09785 * 309.99906 * 17 16 15 19 19 C 1.37971 * 119.90267 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.09601 * 0.26220 * 19 18 17 21 21 F 1.35102 * 119.90340 * 179.71900 * 20 19 18 22 22 C 1.38559 * 120.19837 * 359.48731 * 20 19 18 23 23 C 1.37976 * 120.09630 * 0.50524 * 22 20 19 24 24 H 1.09004 * 109.47059 * 300.00220 * 1 2 3 25 25 H 1.09000 * 109.46929 * 60.00846 * 1 2 3 26 26 H 1.09009 * 109.46649 * 180.02562 * 1 2 3 27 27 H 1.07991 * 119.78084 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.90524 * 179.71884 * 5 4 3 29 29 H 0.97001 * 120.00286 * 179.97438 * 10 9 7 30 30 H 1.07996 * 120.21826 * 179.97438 * 15 6 5 31 31 H 1.08005 * 120.04577 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.95223 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.95321 * 180.23733 * 22 20 19 34 34 H 1.07995 * 120.04680 * 179.76753 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2844 2.3737 0.0053 5 6 1.8920 3.5952 0.0001 6 6 3.2980 3.6872 -0.0054 7 6 3.9255 4.9525 -0.0103 8 1 3.4072 5.8107 -0.4122 9 6 5.2178 5.0943 0.5053 10 7 5.7185 4.1663 1.2809 11 14 6.2294 6.6080 0.0870 12 1 5.4417 7.4999 -0.8013 13 1 6.5756 7.3327 1.3360 14 1 7.4755 6.1943 -0.6069 15 6 4.0743 2.5148 -0.0050 16 6 3.4468 1.2790 0.0003 17 6 4.2543 0.0347 0.0003 18 6 5.2814 -0.1319 -0.9269 19 6 6.0303 -1.2907 -0.9230 20 6 5.7589 -2.2902 -0.0027 21 9 6.4910 -3.4256 -0.0061 22 6 4.7421 -2.1267 0.9242 23 6 3.9883 -0.9711 0.9277 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 0.2063 2.3108 0.0098 28 1 1.2935 4.4942 -0.0004 29 1 6.6149 4.2645 1.6382 30 1 5.1524 2.5767 -0.0096 31 1 5.4914 0.6453 -1.6469 32 1 6.8262 -1.4208 -1.6414 33 1 4.5365 -2.9067 1.6423 34 1 3.1935 -0.8461 1.6481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239474607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:54:41 Heat of formation + Delta-G solvation = -45.683056 kcal Electronic energy + Delta-G solvation = -19894.090384 eV Core-core repulsion = 16671.079639 eV Total energy + Delta-G solvation = -3223.010745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.54719 -39.26296 -37.98334 -36.35790 -33.44176 -31.68959 -30.72143 -29.17631 -27.97367 -26.87185 -24.70292 -22.64441 -22.45832 -20.69222 -20.08681 -17.55440 -17.15401 -16.89110 -15.83258 -15.42381 -15.26992 -15.16786 -14.87973 -14.57501 -13.82412 -13.23969 -13.19150 -13.06120 -12.92115 -12.67733 -12.16688 -11.79701 -11.62409 -11.47692 -11.28647 -11.09921 -10.81624 -10.72018 -10.59896 -10.01559 -9.90573 -9.52577 -9.12321 -8.67574 -8.41839 -7.43046 -7.03650 -6.76529 -4.33213 1.49645 1.70504 2.68992 2.79536 3.06586 3.10697 3.13615 3.91386 4.09406 4.26753 4.53454 4.65202 5.17753 5.22092 5.41345 5.51945 5.59146 5.65493 5.77977 5.82306 5.84239 6.03679 6.27410 6.34315 6.52902 6.54249 6.69228 6.85338 6.94086 7.04296 7.14250 7.26787 7.36534 7.42902 7.67198 7.88632 8.08548 8.35466 8.54133 8.82071 8.86878 10.16878 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.006491 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.596583 B = 4312.779944 C = 5901.288942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.012 3.988 4 C -0.169 4.169 5 C -0.185 4.185 6 C 0.085 3.915 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.798 5.798 11 Si 0.906 3.094 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.272 1.272 15 C -0.112 4.112 16 C -0.070 4.070 17 C -0.006 4.006 18 C -0.086 4.086 19 C -0.155 4.155 20 C 0.073 3.927 21 F -0.151 7.151 22 C -0.156 4.156 23 C -0.071 4.071 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.280 0.720 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -6.933 -1.707 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C -0.031 4.031 4 C -0.188 4.188 5 C -0.205 4.205 6 C 0.083 3.917 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.424 5.424 11 Si 0.730 3.270 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.197 1.197 15 C -0.131 4.131 16 C -0.071 4.071 17 C -0.007 4.007 18 C -0.104 4.104 19 C -0.174 4.174 20 C 0.054 3.946 21 F -0.130 7.130 22 C -0.175 4.175 23 C -0.089 4.089 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.850 -7.205 -1.562 7.601 hybrid contribution 0.324 0.698 -0.018 0.770 sum -1.527 -6.507 -1.581 6.868 Atomic orbital electron populations 1.22731 0.81020 1.01809 1.00346 1.85872 1.19015 1.28245 1.90886 1.18513 0.90711 0.83115 1.10793 1.20362 0.97496 0.92817 1.08118 1.20659 0.94885 0.95179 1.09784 1.17509 0.90568 0.93348 0.90260 1.19467 0.98860 0.95091 1.35831 0.90403 1.25859 0.97912 0.97777 0.92658 1.69824 1.16443 1.33576 1.22527 0.86299 0.79844 0.81580 0.79243 1.18469 1.20046 1.19715 1.21339 1.00029 0.89128 1.02619 1.17857 0.88791 0.92088 1.08368 1.18937 0.94153 0.93726 0.93846 1.21146 0.94456 0.96411 0.98430 1.20955 1.02175 0.94133 1.00119 1.17686 0.93994 0.83631 0.99327 1.91434 1.76301 1.49021 1.96237 1.20974 0.96958 0.99630 0.99934 1.21068 0.98065 0.91741 0.97992 0.93884 0.93921 0.89979 0.88341 0.88517 0.90862 0.85165 0.85088 0.85398 0.85484 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.80 101.05 0.99 1.53 16 2 O -0.32 -6.26 8.84 -18.54 -0.16 -6.43 16 3 C 0.01 0.27 6.63 -38.44 -0.25 0.01 16 4 C -0.17 -3.62 8.95 -39.90 -0.36 -3.97 16 5 C -0.19 -4.32 9.72 -39.23 -0.38 -4.70 16 6 C 0.09 2.17 5.56 -106.85 -0.59 1.57 16 7 C -0.46 -11.76 9.04 -37.84 -0.34 -12.10 16 8 H 0.08 1.91 7.90 -52.48 -0.41 1.50 16 9 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 10 N -0.80 -20.01 10.96 55.54 0.61 -19.40 16 11 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 12 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 13 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C -0.11 -2.75 8.13 -38.55 -0.31 -3.07 16 16 C -0.07 -1.59 5.48 -104.80 -0.57 -2.16 16 17 C -0.01 -0.13 5.27 -104.90 -0.55 -0.68 16 18 C -0.09 -1.57 9.50 -39.26 -0.37 -1.94 16 19 C -0.16 -2.52 10.01 -39.56 -0.40 -2.92 16 20 C 0.07 1.20 7.30 -39.35 -0.29 0.91 16 21 F -0.15 -2.41 17.26 2.25 0.04 -2.37 16 22 C -0.16 -2.53 10.01 -39.56 -0.40 -2.93 16 23 C -0.07 -1.28 8.78 -39.26 -0.34 -1.63 16 24 H 0.04 0.60 7.64 -51.93 -0.40 0.20 16 25 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 26 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.10 1.82 6.25 -52.49 -0.33 1.49 16 28 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.13 3.32 6.17 -52.49 -0.32 2.99 16 31 H 0.13 2.28 8.04 -52.48 -0.42 1.85 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.13 2.31 7.70 -52.49 -0.40 1.91 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -26.82 299.27 -7.81 -34.63 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.51 Total: 6.25 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -4.27 Total: -30.35 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.16 Total: -6.43 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.82 -7.81 -34.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239474607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.051 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds