Wall clock time and date at job start Mon Mar 30 2020 19:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48503 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47120 * 300.00055 * 3 2 1 6 6 H 1.48502 * 109.47434 * 60.00030 * 3 2 1 7 7 C 1.38817 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99497 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64823 * 359.97438 * 9 7 2 11 11 C 1.54322 * 107.26950 * 178.97295 * 10 9 7 12 12 C 1.55156 * 102.94322 * 337.80873 * 11 10 9 13 13 H 1.08998 * 111.00035 * 277.38936 * 12 11 10 14 14 N 1.46501 * 111.00549 * 153.57595 * 12 11 10 15 15 C 1.34769 * 119.99746 * 158.17370 * 14 12 11 16 16 O 1.21280 * 120.00770 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99873 * 180.02562 * 15 14 12 18 18 F 1.39898 * 110.83080 * 313.64983 * 17 15 14 19 19 C 1.54807 * 110.90909 * 190.00490 * 17 15 14 20 20 C 1.54106 * 104.18688 * 220.91968 * 19 17 15 21 21 O 1.43739 * 107.29313 * 357.97161 * 20 19 17 22 22 C 1.44380 * 106.97820 * 26.50894 * 21 20 19 23 23 C 1.47463 * 125.62593 * 179.97438 * 9 7 2 24 24 H 0.97001 * 119.99711 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.88262 * 59.55066 * 10 9 7 26 26 H 1.09004 * 109.88005 * 298.39349 * 10 9 7 27 27 H 1.08998 * 110.72121 * 219.43839 * 11 10 9 28 28 H 1.09007 * 110.86819 * 96.24117 * 11 10 9 29 29 H 0.97001 * 119.99787 * 338.17968 * 14 12 11 30 30 H 1.08997 * 110.48888 * 102.24425 * 19 17 15 31 31 H 1.09000 * 110.48626 * 339.59653 * 19 17 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 20 19 17 33 33 H 1.08997 * 109.87906 * 238.39454 * 20 19 17 34 34 H 1.08998 * 110.61673 * 78.44262 * 22 21 20 35 35 H 1.08994 * 110.62020 * 201.27896 * 22 21 20 36 36 H 1.09004 * 110.34671 * 85.26037 * 23 9 7 37 37 H 1.08992 * 110.41156 * 322.91786 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0259 12 6 0.8517 -4.6563 -0.6103 13 1 0.8564 -4.5973 -1.6987 14 7 1.0289 -6.0395 -0.1614 15 6 1.8112 -6.8814 -0.8652 16 8 2.3691 -6.4939 -1.8700 17 6 1.9930 -8.3045 -0.4038 18 9 2.2586 -8.3523 0.9689 19 6 3.1137 -9.0072 -1.2080 20 6 2.5611 -10.4220 -1.4689 21 8 1.2795 -10.5058 -0.8234 22 6 0.7521 -9.1634 -0.7572 23 6 1.9339 -3.7314 0.0005 24 1 -0.4850 0.8401 0.0004 25 1 -0.5576 -2.0523 -0.8831 26 1 -0.5545 -2.0841 0.9023 27 1 -1.2987 -4.2516 -0.6758 28 1 -0.6336 -4.4201 0.9804 29 1 0.5830 -6.3494 0.6424 30 1 4.0304 -9.0580 -0.6206 31 1 3.2910 -8.4873 -2.1495 32 1 2.4475 -10.5837 -2.5408 33 1 3.2382 -11.1671 -1.0515 34 1 0.3406 -8.8647 -1.7213 35 1 -0.0056 -9.0866 0.0225 36 1 2.1672 -4.0417 1.0191 37 1 2.8331 -3.7413 -0.6154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015605708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:47 Heat of formation + Delta-G solvation = -97.472161 kcal Electronic energy + Delta-G solvation = -21459.490494 eV Core-core repulsion = 17959.217837 eV Total energy + Delta-G solvation = -3500.272657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.14883 -40.15966 -38.87811 -37.29155 -34.22143 -32.24978 -31.85111 -29.80281 -29.12447 -27.19252 -24.78038 -23.77747 -22.70463 -20.57444 -20.43864 -19.94189 -18.31396 -17.29204 -16.89553 -16.26879 -16.12345 -15.61941 -15.16722 -14.79147 -14.61511 -14.33529 -14.14439 -14.00434 -13.22782 -12.98832 -12.55111 -12.48192 -12.29938 -12.06848 -11.87884 -11.75879 -11.35254 -11.08455 -10.95123 -10.80913 -10.43826 -10.10964 -10.08957 -9.98863 -9.83745 -9.71488 -8.94958 -8.63636 -6.88099 -5.74697 -3.08437 2.27966 2.84350 3.39044 3.39912 3.45251 3.47627 3.75378 3.99401 4.29996 4.43154 4.52701 4.66789 4.72732 5.14210 5.16361 5.24866 5.34752 5.38608 5.53026 5.55299 5.63007 5.66062 5.71895 6.06261 6.22912 6.30904 6.33666 6.45909 6.61105 6.83975 7.40346 7.51470 7.52697 7.77776 8.01792 8.21384 9.18487 9.78094 10.42418 11.37339 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045286 B = 0.003819 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.147268 B = 7330.897483 C = 7593.725878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.124 3.876 13 H 0.098 0.902 14 N -0.702 5.702 15 C 0.507 3.493 16 O -0.518 6.518 17 C 0.068 3.932 18 F -0.180 7.180 19 C -0.168 4.168 20 C 0.047 3.953 21 O -0.366 6.366 22 C 0.040 3.960 23 C 0.129 3.871 24 H 0.252 0.748 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.402 0.598 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.021 0.979 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -19.380 -1.042 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.020 3.980 13 H 0.116 0.884 14 N -0.351 5.351 15 C 0.289 3.711 16 O -0.394 6.394 17 C 0.046 3.954 18 F -0.161 7.161 19 C -0.206 4.206 20 C -0.030 4.030 21 O -0.285 6.285 22 C -0.038 4.038 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.039 0.961 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.841 -19.036 -1.662 19.127 hybrid contribution 0.374 0.960 0.543 1.165 sum 1.215 -18.076 -1.119 18.151 Atomic orbital electron populations 1.69953 1.04891 1.25018 1.57219 1.24808 0.95765 0.97711 1.02128 0.86011 0.78758 0.83565 0.77243 1.20465 1.21684 1.21719 1.19128 0.90561 0.82213 1.43697 0.90286 1.44406 1.01609 0.99751 1.87299 1.21157 0.84532 0.87283 1.01620 1.23199 0.95597 1.00127 0.99877 1.22446 0.97459 0.78077 1.00063 0.88359 1.46020 1.48303 1.12185 1.28626 1.20215 0.79903 0.86340 0.84665 1.90748 1.46860 1.76447 1.25300 1.22674 0.99199 0.95178 0.78367 1.92937 1.94981 1.97319 1.30849 1.23516 0.98188 0.95750 1.03150 1.23257 0.84994 0.96559 0.98165 1.88931 1.33301 1.25655 1.80566 1.24079 0.94335 0.81803 1.03569 1.21825 0.94716 0.86167 0.97125 0.93746 0.93116 0.93432 0.91423 0.91856 0.76331 0.88435 0.86654 0.91302 0.88956 0.89547 0.86853 0.96112 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.31 55.49 0.57 -26.32 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.50 3.40 -170.04 -0.58 -16.08 16 10 C 0.18 4.22 5.37 -3.06 -0.02 4.21 16 11 C -0.15 -2.58 6.59 -24.90 -0.16 -2.74 16 12 C 0.12 2.17 3.37 -65.78 -0.22 1.95 16 13 H 0.10 1.87 7.63 -51.93 -0.40 1.47 16 14 N -0.70 -9.73 5.19 -51.73 -0.27 -10.00 16 15 C 0.51 7.16 6.92 -10.99 -0.08 7.09 16 16 O -0.52 -9.01 15.15 5.56 0.08 -8.92 16 17 C 0.07 0.77 1.58 -89.76 -0.14 0.63 16 18 F -0.18 -2.23 16.88 2.25 0.04 -2.19 16 19 C -0.17 -1.66 6.31 -25.20 -0.16 -1.82 16 20 C 0.05 0.40 7.70 37.74 0.29 0.69 16 21 O -0.37 -3.87 11.52 -35.23 -0.41 -4.28 16 22 C 0.04 0.38 6.97 38.21 0.27 0.64 16 23 C 0.13 2.76 6.93 -2.51 -0.02 2.74 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 26 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.97 7.99 -51.93 -0.42 0.56 16 29 H 0.40 4.56 8.46 -40.82 -0.35 4.22 16 30 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.12 1.22 6.78 -51.93 -0.35 0.87 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -32.22 307.72 -6.64 -38.85 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.20 Total: 0.65 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.49 Total: 6.49 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.27 Total: -52.40 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.32 Total: -13.20 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.22 -6.64 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015605708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.620 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds