Wall clock time and date at job start Mon Mar 30 2020 19:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34326 * 126.16931 * 2 1 4 4 O 1.34757 * 107.11621 * 179.81052 * 3 2 1 5 5 C 1.33973 * 107.75194 * 0.35976 * 4 3 2 6 6 C 1.50694 * 125.61733 * 179.90127 * 5 4 3 7 7 N 1.46497 * 109.46838 * 269.68690 * 6 5 4 8 8 C 1.36932 * 120.00251 * 275.63369 * 7 6 5 9 9 H 1.08001 * 119.99885 * 34.20365 * 8 7 6 10 10 C 1.38816 * 120.00224 * 214.20410 * 8 7 6 11 11 N 1.31614 * 119.99891 * 23.08409 * 10 8 7 12 12 Si 1.86803 * 119.99950 * 203.09010 * 10 8 7 13 13 H 1.48499 * 109.47381 * 89.99496 * 12 10 8 14 14 H 1.48499 * 109.47048 * 209.99850 * 12 10 8 15 15 H 1.48504 * 109.46987 * 329.99740 * 12 10 8 16 16 C 1.46504 * 120.00199 * 95.90920 * 7 6 5 17 17 C 1.50693 * 109.47539 * 269.72691 * 16 7 6 18 18 C 1.38238 * 119.99935 * 269.72522 * 17 16 7 19 19 C 1.38240 * 120.00058 * 179.75832 * 18 17 16 20 20 C 1.38234 * 119.99535 * 0.49133 * 19 18 17 21 21 C 1.38237 * 120.00393 * 359.78255 * 20 19 18 22 22 C 1.38231 * 119.99900 * 359.96330 * 21 20 19 23 23 N 1.30254 * 108.76063 * 359.62991 * 5 4 3 24 24 H 1.08999 * 109.47296 * 269.99079 * 1 2 3 25 25 H 1.09001 * 109.46865 * 29.98281 * 1 2 3 26 26 H 1.08993 * 109.47431 * 149.98493 * 1 2 3 27 27 H 1.08002 * 126.44595 * 0.04908 * 3 2 1 28 28 H 1.09000 * 109.47364 * 149.68768 * 6 5 4 29 29 H 1.09005 * 109.47437 * 29.68725 * 6 5 4 30 30 H 0.97000 * 119.99614 * 179.97438 * 11 10 8 31 31 H 1.09006 * 109.46857 * 29.72780 * 16 7 6 32 32 H 1.09000 * 109.47384 * 149.71778 * 16 7 6 33 33 H 1.07996 * 119.99923 * 359.97438 * 18 17 16 34 34 H 1.07994 * 119.99881 * 180.24748 * 19 18 17 35 35 H 1.08000 * 119.99738 * 179.76382 * 20 19 18 36 36 H 1.07999 * 119.99559 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.99711 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0844 0.0000 4 8 3.5734 0.6445 0.0043 5 6 3.5431 -0.6949 -0.0012 6 6 4.7478 -1.6001 -0.0013 7 7 5.1378 -1.8938 -1.3825 8 6 4.5235 -2.9087 -2.0663 9 1 3.4796 -3.1233 -1.8912 10 6 5.2424 -3.6617 -2.9845 11 7 6.5531 -3.7363 -2.8920 12 14 4.3494 -4.5690 -4.3516 13 1 4.2350 -3.6855 -5.5397 14 1 5.1113 -5.7908 -4.7148 15 1 2.9918 -4.9519 -3.8871 16 6 6.1893 -1.1057 -2.0302 17 6 5.5717 0.0780 -2.7290 18 6 5.1694 -0.0302 -4.0471 19 6 4.5983 1.0542 -4.6866 20 6 4.4388 2.2496 -4.0111 21 6 4.8462 2.3595 -2.6947 22 6 5.4125 1.2736 -2.0536 23 7 2.3005 -1.0857 -0.0007 24 1 -0.3634 -0.0002 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5140 27 1 1.9770 2.1151 0.0007 28 1 4.5039 -2.5297 0.5130 29 1 5.5731 -1.1066 0.5122 30 1 7.0554 -4.2628 -3.5334 31 1 6.8963 -0.7554 -1.2780 32 1 6.7117 -1.7258 -2.7586 33 1 5.2981 -0.9628 -4.5762 34 1 4.2803 0.9685 -5.7152 35 1 3.9960 3.0979 -4.5119 36 1 4.7219 3.2936 -2.1672 37 1 5.7312 1.3596 -1.0253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237649662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:00 Heat of formation + Delta-G solvation = 67.676990 kcal Electronic energy + Delta-G solvation = -21254.375182 eV Core-core repulsion = 18192.033154 eV Total energy + Delta-G solvation = -3062.342028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.56149 -38.55242 -35.81989 -34.46429 -32.06600 -31.41122 -30.24688 -30.15001 -27.61783 -25.75397 -25.60391 -22.40654 -21.84525 -20.87631 -20.41765 -20.06761 -17.01440 -16.38858 -16.22748 -15.73987 -14.95364 -14.57244 -14.26794 -14.19011 -14.00372 -13.43210 -13.36630 -12.98145 -12.75723 -12.67268 -12.25012 -11.93048 -11.80344 -11.49823 -10.98465 -10.92159 -10.69874 -10.65401 -10.30714 -10.16602 -10.06805 -9.94639 -9.77826 -8.69769 -8.24614 -8.15901 -7.95756 -6.90096 -5.95197 -3.48826 2.01641 2.08575 2.16517 3.30686 3.33144 3.40259 3.45386 3.51143 4.38125 4.50548 4.70511 5.20709 5.27859 5.39650 5.47126 5.52254 5.53724 5.64499 5.76536 5.80329 5.92233 5.96489 6.14912 6.19414 6.25963 6.43037 6.46950 6.52365 6.61905 6.73414 6.77382 6.99475 7.10063 7.16959 7.36587 7.60165 7.73648 7.78881 8.32918 8.52062 9.01327 9.60453 10.12924 11.06901 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.008819 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.336353 B = 3174.271270 C = 4067.660306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.023 4.023 3 C -0.104 4.104 4 O -0.199 6.199 5 C 0.206 3.794 6 C 0.226 3.774 7 N -0.554 5.554 8 C -0.259 4.259 9 H 0.071 0.929 10 C 0.017 3.983 11 N -0.883 5.883 12 Si 0.896 3.104 13 H -0.285 1.285 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.164 3.836 17 C -0.077 4.077 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.108 4.108 23 N -0.489 5.489 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.198 0.802 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.039 0.961 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 10.439 2.855 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C -0.175 4.175 4 O -0.085 6.085 5 C -0.005 4.005 6 C 0.096 3.904 7 N -0.271 5.271 8 C -0.388 4.388 9 H 0.089 0.911 10 C -0.184 4.184 11 N -0.524 5.524 12 Si 0.725 3.275 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.200 1.200 16 C 0.039 3.961 17 C -0.079 4.079 18 C -0.116 4.116 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.127 4.127 23 N -0.219 5.219 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.214 0.786 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.231 9.657 2.766 10.900 hybrid contribution -0.639 0.567 -0.956 1.282 sum -4.870 10.225 1.810 11.469 Atomic orbital electron populations 1.19997 0.87701 1.02710 1.01976 1.21727 0.97644 0.89022 1.05872 1.24408 0.81519 1.00136 1.11450 1.84506 1.29638 1.24963 1.69431 1.28912 0.97166 0.78786 0.95614 1.19504 0.87731 0.93850 0.89307 1.43853 1.42387 1.33381 1.07484 1.19176 0.93346 1.07472 1.18786 0.91128 1.25042 0.95261 0.97074 1.00999 1.69974 1.05657 1.41000 1.35799 0.86380 0.79664 0.78891 0.82532 1.21139 1.21572 1.19987 1.20317 0.89749 0.88828 0.97206 1.21131 0.97205 0.95731 0.93864 1.21107 0.97661 0.97806 0.95022 1.21057 1.00669 0.93758 0.99426 1.20876 1.02515 0.97416 0.95206 1.20918 1.00552 0.98295 0.94954 1.20994 0.99732 0.93020 0.98931 1.70378 1.01031 1.30730 1.19766 0.91452 0.91524 0.90996 0.78551 0.88628 0.91263 0.93223 0.94276 0.86762 0.86419 0.87312 0.87511 0.87543 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.43 36.00 0.38 -0.52 16 2 C -0.02 -0.41 7.11 -82.81 -0.59 -1.00 16 3 C -0.10 -1.70 12.08 29.35 0.35 -1.35 16 4 O -0.20 -3.72 8.49 5.33 0.05 -3.68 16 5 C 0.21 4.23 7.88 -12.95 -0.10 4.12 16 6 C 0.23 4.65 6.35 -5.20 -0.03 4.61 16 7 N -0.55 -13.08 2.43 -175.99 -0.43 -13.50 16 8 C -0.26 -6.83 9.47 -15.06 -0.14 -6.97 16 9 H 0.07 1.98 7.93 -52.49 -0.42 1.57 16 10 C 0.02 0.44 4.95 -17.43 -0.09 0.35 16 11 N -0.88 -23.79 11.32 55.49 0.63 -23.16 16 12 Si 0.90 21.25 29.61 -169.99 -5.03 16.22 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.16 3.67 5.46 -5.19 -0.03 3.65 16 17 C -0.08 -1.59 5.46 -104.63 -0.57 -2.17 16 18 C -0.10 -2.02 9.70 -39.58 -0.38 -2.41 16 19 C -0.13 -2.38 10.05 -39.58 -0.40 -2.77 16 20 C -0.14 -2.35 10.05 -39.58 -0.40 -2.75 16 21 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.11 -2.00 7.98 -39.58 -0.32 -2.32 16 23 N -0.49 -10.41 11.29 -7.36 -0.08 -10.49 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.10 1.97 8.09 -51.93 -0.42 1.55 16 29 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.04 0.81 7.79 -51.93 -0.40 0.40 16 32 H 0.12 2.87 5.26 -51.93 -0.27 2.59 16 33 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.95 7.58 -52.49 -0.40 1.55 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -29.50 318.97 -7.61 -37.11 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.84 Total: 4.76 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.72 Total: -12.06 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.12 Total: -47.16 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.05 Total: -3.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.50 -7.61 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237649662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.789 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds