Wall clock time and date at job start Mon Mar 30 2020 19:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48505 * 109.46866 * 269.99645 * 3 2 1 5 5 H 1.48492 * 109.47239 * 29.99874 * 3 2 1 6 6 H 1.48505 * 109.46983 * 150.00313 * 3 2 1 7 7 C 1.38804 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00333 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99718 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00026 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46969 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00478 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99976 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00276 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47054 * 180.02562 * 14 13 11 16 16 N 1.46898 * 109.46771 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99895 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46904 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.46626 * 179.97438 * 18 17 16 20 20 C 1.53003 * 117.49663 * 243.74292 * 19 18 17 21 21 C 1.53002 * 117.49643 * 175.08260 * 19 18 17 22 22 H 0.96999 * 119.99972 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46698 * 60.00527 * 10 9 7 24 24 H 1.08997 * 109.47093 * 300.00362 * 10 9 7 25 25 H 0.97005 * 120.00236 * 0.02562 * 13 11 10 26 26 H 1.08995 * 109.47397 * 59.99589 * 14 13 11 27 27 H 1.09005 * 109.46797 * 299.99189 * 14 13 11 28 28 H 1.08995 * 109.47532 * 59.99454 * 15 14 13 29 29 H 1.09005 * 109.46478 * 299.99166 * 15 14 13 30 30 H 1.00901 * 110.99796 * 303.94712 * 16 15 14 31 31 H 1.08993 * 109.47034 * 59.99137 * 17 16 15 32 32 H 1.09000 * 109.46693 * 299.99478 * 17 16 15 33 33 H 1.08993 * 109.47839 * 59.99803 * 18 17 16 34 34 H 1.09000 * 109.47160 * 299.99365 * 18 17 16 35 35 H 1.09002 * 115.55153 * 29.41498 * 19 18 17 36 36 H 1.08998 * 117.49856 * 0.02562 * 20 19 18 37 37 H 1.09000 * 117.49861 * 145.02337 * 20 19 18 38 38 H 1.08993 * 117.50251 * 214.97577 * 21 19 18 39 39 H 1.09003 * 117.49715 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0017 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0016 13 7 6.0457 -4.4947 0.0029 14 6 7.4907 -4.7358 0.0038 15 6 7.7564 -6.2426 0.0039 16 7 9.2053 -6.4843 0.0055 17 6 9.4989 -7.9237 0.0063 18 6 11.0143 -8.1351 0.0072 19 6 11.3200 -9.6343 0.0087 20 6 12.0489 -10.2054 1.2267 21 6 12.7861 -10.0563 -0.1066 22 1 -0.4850 0.8400 -0.0004 23 1 3.6433 -3.4326 -0.8877 24 1 3.6439 -3.4306 0.8923 25 1 5.4291 -5.2436 0.0029 26 1 7.9332 -4.2884 0.8937 27 1 7.9341 -4.2893 -0.8863 28 1 7.3139 -6.6897 -0.8862 29 1 7.3129 -6.6895 0.8938 30 1 9.6493 -6.0249 -0.7755 31 1 9.0689 -8.3827 -0.8838 32 1 9.0673 -8.3820 0.8961 33 1 11.4447 -7.6760 0.8971 34 1 11.4456 -7.6768 -0.8828 35 1 10.5748 -10.2665 -0.4741 36 1 12.3102 -9.5131 2.0271 37 1 11.7835 -11.2135 1.5450 38 1 13.0055 -10.9664 -0.6647 39 1 13.5329 -9.2659 -0.1830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:11 Heat of formation + Delta-G solvation = -26.940979 kcal Electronic energy + Delta-G solvation = -17305.531784 eV Core-core repulsion = 14374.530764 eV Total energy + Delta-G solvation = -2931.001020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.31607 -38.34622 -36.74433 -34.42717 -32.43491 -31.35396 -29.55127 -27.02708 -25.59421 -23.09228 -22.73498 -22.41877 -20.80085 -20.44466 -17.88586 -16.80592 -16.38740 -16.08234 -15.92725 -15.29197 -15.04766 -14.91441 -14.51364 -14.18318 -13.98750 -13.60570 -13.19883 -12.79252 -12.68694 -12.13765 -12.09639 -11.92900 -11.77347 -11.63699 -11.46030 -11.25928 -11.00163 -10.67358 -10.58750 -10.31429 -9.85373 -9.54134 -9.02012 -8.96298 -8.86937 -8.49568 -6.91366 -6.28542 -4.00268 2.73626 2.98267 3.21057 3.33586 3.35176 3.51448 3.57980 3.93848 4.33799 4.38903 4.45259 4.47755 4.61527 4.75116 4.76175 4.84697 4.89860 5.10529 5.11510 5.20753 5.21142 5.27742 5.32010 5.47421 5.50114 5.64944 5.70109 5.70499 5.79110 5.83686 5.91408 6.01476 6.46610 6.59382 6.94533 7.59799 7.94497 8.41871 8.49221 9.17659 10.80648 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.078547 B = 0.002169 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.388171 B =12908.709854 C =13153.540921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.688 5.688 17 C 0.063 3.937 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.180 4.180 21 C -0.182 4.182 22 H 0.271 0.729 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.399 0.601 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.344 0.656 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.858 -20.592 -0.447 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.320 5.320 17 C -0.066 4.066 18 C -0.126 4.126 19 C -0.172 4.172 20 C -0.217 4.217 21 C -0.219 4.219 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.233 0.767 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.038 -18.854 0.241 29.003 hybrid contribution -1.365 -1.042 -0.964 1.970 sum 20.672 -19.896 -0.723 28.700 Atomic orbital electron populations 1.69940 1.05912 1.27760 1.48083 1.24716 0.94459 0.98977 0.93169 0.86730 0.81915 0.83251 0.79933 1.19216 1.19933 1.15896 1.22324 0.88287 0.97546 1.58783 0.89383 1.84798 1.09255 1.00067 1.97427 1.23277 0.93955 1.04397 1.05830 1.20268 0.90598 0.82194 0.75264 1.90706 1.58782 1.42176 1.47607 1.45862 1.07349 1.08145 1.77858 1.21159 0.81422 0.94615 1.02997 1.22091 0.88839 0.95747 1.01337 1.60309 1.09787 1.11397 1.50484 1.21941 0.95932 0.87923 1.00819 1.21146 0.95471 0.93142 1.02815 1.22279 0.95348 0.96695 1.02896 1.23066 1.04507 1.02394 0.91756 1.22980 0.94854 1.03238 1.00797 0.91949 0.88498 0.88404 0.76733 0.90617 0.91776 0.94505 0.90242 0.83820 0.95105 0.90708 0.90736 0.91606 0.87895 0.88618 0.88943 0.88898 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16 12 O -0.52 -11.35 15.86 5.56 0.09 -11.27 16 13 N -0.74 -9.31 5.56 -60.29 -0.33 -9.65 16 14 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 15 C 0.05 0.40 5.80 -3.82 -0.02 0.38 16 16 N -0.69 -5.39 6.50 -113.78 -0.74 -6.13 16 17 C 0.06 0.42 5.64 -3.82 -0.02 0.40 16 18 C -0.09 -0.54 5.76 -26.73 -0.15 -0.69 16 19 C -0.15 -0.88 5.73 -90.61 -0.52 -1.40 16 20 C -0.18 -1.01 10.18 -26.69 -0.27 -1.28 16 21 C -0.18 -0.99 10.26 -26.69 -0.27 -1.26 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 24 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 25 H 0.40 3.81 8.47 -40.82 -0.35 3.47 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.34 2.45 8.73 -39.29 -0.34 2.10 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -33.55 343.20 -9.27 -42.82 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.58 Total: 0.69 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.94 Total: -7.35 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.30 Total: -41.61 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.55 -9.27 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.882 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds