Wall clock time and date at job start Mon Mar 30 2020 19:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.84207 * 2 1 4 4 S 1.83954 * 110.78844 * 123.41210 * 2 1 3 5 5 C 1.83954 * 94.80624 * 152.77119 * 4 2 1 6 6 C 1.54257 * 102.58232 * 325.50794 * 5 4 2 7 7 C 1.52336 * 112.58746 * 24.52668 * 6 5 4 8 8 H 1.09003 * 108.86868 * 239.18353 * 7 6 5 9 9 N 1.46499 * 108.87068 * 120.82033 * 7 6 5 10 10 C 1.34778 * 119.99823 * 86.45427 * 9 7 6 11 11 O 1.21580 * 120.00028 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99984 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00022 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47081 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47258 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47387 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00029 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99631 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00315 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47083 * 60.00138 * 20 18 16 22 22 H 1.48500 * 109.47309 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47369 * 300.00343 * 20 18 16 24 24 H 1.09005 * 109.46867 * 183.42763 * 1 2 3 25 25 H 1.08999 * 109.47096 * 303.41865 * 1 2 3 26 26 H 1.08992 * 109.47225 * 63.42624 * 1 2 3 27 27 H 1.09006 * 110.79056 * 207.23563 * 5 4 2 28 28 H 1.09001 * 110.95446 * 83.85362 * 5 4 2 29 29 H 1.08999 * 108.86709 * 263.71130 * 6 5 4 30 30 H 1.08997 * 108.75762 * 145.26578 * 6 5 4 31 31 H 0.97001 * 120.00290 * 266.46204 * 9 7 6 32 32 H 0.97006 * 119.99620 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47114 * 300.00126 * 13 12 10 34 34 H 1.09002 * 109.47032 * 60.00251 * 13 12 10 35 35 H 1.09002 * 109.47138 * 300.00560 * 14 13 12 36 36 H 1.09002 * 109.46832 * 60.00313 * 14 13 12 37 37 H 1.09002 * 109.47626 * 300.00411 * 15 14 13 38 38 H 1.09002 * 109.46821 * 60.00457 * 15 14 13 39 39 H 0.97005 * 119.99655 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 16 2.1829 -0.9470 1.4356 5 6 3.7614 -1.4079 0.6111 6 6 3.3327 -1.5862 -0.8599 7 6 2.0775 -0.7943 -1.2036 8 1 1.3085 -1.4851 -1.5493 9 7 2.3896 0.1417 -2.2866 10 6 2.3056 -0.2607 -3.5701 11 8 1.9705 -1.4003 -3.8293 12 7 2.5932 0.6003 -4.5664 13 6 2.5024 0.1628 -5.9616 14 6 2.8772 1.3234 -6.8855 15 6 2.7831 0.8663 -8.3425 16 6 3.1528 2.0093 -9.2524 17 1 3.4279 2.9659 -8.8333 18 6 3.1410 1.8335 -10.6199 19 7 2.8065 0.6684 -11.1302 20 14 3.6000 3.2500 -11.7477 21 1 4.9887 3.6865 -11.4542 22 1 3.5085 2.8064 -13.1620 23 1 2.6671 4.3835 -11.5237 24 1 -0.3633 -1.0259 0.0614 25 1 -0.3633 0.5660 0.8578 26 1 -0.3633 0.4597 -0.9190 27 1 4.1513 -2.3417 1.0163 28 1 4.4979 -0.6099 0.7053 29 1 3.1445 -2.6435 -1.0465 30 1 4.1463 -1.2545 -1.5048 31 1 2.6567 1.0510 -2.0798 32 1 2.8609 1.5094 -4.3596 33 1 3.1870 -0.6692 -6.1267 34 1 1.4829 -0.1574 -6.1764 35 1 2.1923 2.1551 -6.7201 36 1 3.8967 1.6440 -6.6708 37 1 3.4682 0.0348 -8.5075 38 1 1.7638 0.5454 -8.5574 39 1 2.7979 0.5448 -12.0923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591927770.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:47 Heat of formation + Delta-G solvation = -52.351779 kcal Electronic energy + Delta-G solvation = -18371.369861 eV Core-core repulsion = 15439.266946 eV Total energy + Delta-G solvation = -2932.102915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14551 -37.37752 -35.29548 -33.46250 -32.75031 -32.34324 -30.96370 -27.10838 -25.88316 -23.97244 -23.10998 -21.04773 -20.65904 -20.38658 -18.17349 -17.20814 -16.57950 -16.29176 -15.44142 -15.16654 -14.79856 -14.60102 -14.45294 -14.04073 -13.91073 -13.60038 -13.48862 -12.54983 -12.37996 -12.28864 -11.92066 -11.81505 -11.71118 -11.48686 -11.19442 -10.89916 -10.74506 -10.63659 -10.31488 -10.13778 -9.87975 -9.46173 -9.34262 -9.15428 -8.68794 -8.38329 -8.11449 -6.03099 -4.06405 1.39369 1.84853 2.76477 3.28113 3.30765 3.35740 3.37470 3.91962 4.26641 4.42863 4.45256 4.47757 4.63145 4.68838 4.90653 5.19774 5.30627 5.32119 5.32567 5.44476 5.61305 5.69681 5.75223 5.77359 5.78416 6.15260 6.33125 6.48399 6.59417 6.74452 6.98850 7.00184 7.61849 7.74755 7.95540 8.06559 8.36310 8.67227 9.00084 9.57759 11.08162 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.050429 B = 0.002603 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.099000 B =10755.995739 C =10828.009785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 H 0.100 0.900 4 S -0.288 6.288 5 C -0.065 4.065 6 C -0.140 4.140 7 C 0.163 3.837 8 H 0.105 0.895 9 N -0.748 5.748 10 C 0.700 3.300 11 O -0.590 6.590 12 N -0.740 5.740 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.394 0.606 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -0.475 24.672 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 H 0.119 0.881 4 S -0.062 6.062 5 C -0.214 4.214 6 C -0.180 4.180 7 C 0.056 3.944 8 H 0.123 0.877 9 N -0.405 5.405 10 C 0.400 3.600 11 O -0.468 6.468 12 N -0.394 5.394 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.128 -1.898 25.338 25.434 hybrid contribution 1.081 1.872 -1.600 2.689 sum -0.047 -0.026 23.738 23.738 Atomic orbital electron populations 1.21700 0.91008 1.03644 1.02902 1.24150 1.00028 1.00760 0.92191 0.88144 1.88110 1.22820 1.69537 1.25716 1.24143 0.95915 1.05086 0.96210 1.22484 0.98191 1.02626 0.94689 1.21527 0.96895 0.90680 0.85322 0.87678 1.45400 1.75414 1.15373 1.04314 1.16032 0.78506 0.85029 0.80458 1.90926 1.54471 1.18400 1.82993 1.45406 1.73155 1.14409 1.06472 1.21527 1.01700 0.98558 0.77066 1.21890 1.00272 0.95918 0.97740 1.19019 0.97649 0.96861 0.87804 1.21165 1.46243 0.97609 0.91173 0.92718 1.25031 0.95336 0.95710 0.98372 1.69959 1.48234 1.22863 1.12207 0.86639 0.79000 0.82522 0.79707 1.20252 1.21254 1.20251 0.91045 0.91532 0.90766 0.87602 0.89187 0.89666 0.89836 0.77168 0.77298 0.91932 0.91908 0.92763 0.92789 0.96255 0.96242 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.04 -0.32 3.57 -26.07 -0.09 -0.41 16 3 H 0.10 0.65 7.75 -51.93 -0.40 0.24 16 4 S -0.29 -2.54 22.74 -107.50 -2.44 -4.99 16 5 C -0.07 -0.47 7.46 37.82 0.28 -0.19 16 6 C -0.14 -1.22 6.09 -26.41 -0.16 -1.38 16 7 C 0.16 1.53 2.60 -67.61 -0.18 1.35 16 8 H 0.11 1.23 7.07 -51.93 -0.37 0.86 16 9 N -0.75 -7.28 4.79 -58.36 -0.28 -7.56 16 10 C 0.70 9.99 8.53 -86.92 -0.74 9.25 16 11 O -0.59 -11.01 15.93 5.29 0.08 -10.93 16 12 N -0.74 -10.17 5.56 -65.23 -0.36 -10.53 16 13 C 0.13 2.33 5.67 -4.04 -0.02 2.31 16 14 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 31 H 0.39 2.72 8.38 -40.82 -0.34 2.38 16 32 H 0.39 4.23 8.49 -40.82 -0.35 3.88 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -32.51 334.32 -9.99 -42.49 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.48 Total: 1.11 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.26 Total: -4.98 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.09 Total: -44.08 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.44 Total: -4.99 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.51 -9.99 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591927770.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds