Wall clock time and date at job start Mon Mar 30 2020 20:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 120.00313 * 2 1 4 4 H 1.48500 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47209 * 299.99907 * 3 2 1 6 6 H 1.48498 * 109.47444 * 60.00095 * 3 2 1 7 7 C 1.39942 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99275 * 197.50469 * 7 2 1 9 9 C 1.41417 * 120.00012 * 17.50562 * 7 2 1 10 10 C 1.40797 * 120.62255 * 203.41408 * 9 7 2 11 11 N 1.31469 * 120.56849 * 179.97438 * 10 9 7 12 12 C 1.32014 * 122.05265 * 359.97438 * 11 10 9 13 13 C 1.39301 * 121.21032 * 359.97438 * 12 11 10 14 14 N 1.39718 * 120.36110 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00037 * 0.03094 * 14 13 12 16 16 C 1.53000 * 109.46965 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47202 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47222 * 179.97438 * 17 16 15 19 19 C 1.36888 * 126.39487 * 90.00593 * 18 17 16 20 20 C 1.34664 * 106.81495 * 179.97438 * 19 18 17 21 21 N 1.34125 * 108.02222 * 359.97438 * 20 19 18 22 22 C 1.30496 * 109.25670 * 359.72892 * 21 20 19 23 23 C 1.38691 * 119.27633 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.71988 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.39587 * 180.02562 * 12 11 10 27 27 H 0.97001 * 120.00534 * 180.02562 * 14 13 12 28 28 H 1.09000 * 109.47001 * 299.98932 * 15 14 13 29 29 H 1.08997 * 109.47326 * 59.99550 * 15 14 13 30 30 H 1.08996 * 109.47485 * 299.99893 * 16 15 14 31 31 H 1.09005 * 109.46958 * 60.00244 * 16 15 14 32 32 H 1.08996 * 109.47169 * 300.00522 * 17 16 15 33 33 H 1.08997 * 109.46851 * 60.00228 * 17 16 15 34 34 H 1.07994 * 126.58967 * 359.96005 * 19 18 17 35 35 H 1.07999 * 125.99059 * 180.02562 * 20 19 18 36 36 H 1.08009 * 125.65482 * 180.29000 * 22 21 20 37 37 H 1.07995 * 120.92847 * 179.72455 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0504 -1.2337 0.2808 9 6 1.3499 -2.4081 -0.3695 10 6 1.8313 -3.6563 0.0695 11 7 1.2184 -4.7676 -0.2737 12 6 0.1391 -4.7664 -1.0339 13 6 -0.4059 -3.5769 -1.5117 14 7 -1.5486 -3.5963 -2.3155 15 6 -2.1805 -4.8725 -2.6596 16 6 -3.4038 -4.6144 -3.5415 17 6 -4.0635 -5.9471 -3.9014 18 7 -5.2351 -5.7000 -4.7454 19 6 -5.2519 -5.6335 -6.1126 20 6 -6.5259 -5.3911 -6.4752 21 7 -7.2670 -5.3123 -5.3600 22 6 -6.5016 -5.5024 -4.3204 23 6 0.1986 -2.3731 -1.1817 24 1 -0.4850 0.8401 -0.0004 25 1 2.7116 -3.7012 0.6936 26 1 -0.3304 -5.7049 -1.2893 27 1 -1.9236 -2.7649 -2.6458 28 1 -1.4684 -5.4967 -3.1993 29 1 -2.4916 -5.3815 -1.7474 30 1 -4.1159 -3.9903 -3.0016 31 1 -3.0930 -4.1051 -4.4539 32 1 -3.3512 -6.5709 -4.4415 33 1 -4.3741 -6.4567 -2.9894 34 1 -4.4059 -5.7523 -6.7732 35 1 -6.8878 -5.2804 -7.4867 36 1 -6.8265 -5.4992 -3.2903 37 1 -0.1988 -1.4354 -1.5412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161684708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:07 Heat of formation + Delta-G solvation = 83.225725 kcal Electronic energy + Delta-G solvation = -19228.297882 eV Core-core repulsion = 16198.922849 eV Total energy + Delta-G solvation = -3029.375033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.18153 -38.52477 -36.51993 -34.52355 -33.93857 -31.40708 -30.26079 -29.59534 -28.09872 -25.72188 -25.09249 -22.61820 -21.50311 -21.49733 -20.94347 -20.57711 -17.70222 -17.23028 -16.09018 -15.69548 -15.44739 -15.36340 -14.83620 -14.76293 -14.37765 -14.05569 -13.57267 -13.32923 -13.14068 -13.07060 -12.49676 -12.23919 -11.83156 -11.60251 -11.48410 -11.30487 -11.18568 -10.98360 -10.55944 -10.15575 -9.98104 -9.77914 -9.56873 -9.36456 -8.70124 -8.10978 -7.80765 -6.89572 -6.47103 -4.50990 1.87857 2.56621 2.69073 3.01332 3.02081 3.06438 3.07387 3.20393 3.84648 3.99534 4.33016 4.55483 4.60723 4.63616 4.79577 4.87350 5.07301 5.13592 5.27645 5.50867 5.52645 5.70494 5.90562 5.93149 6.08257 6.10196 6.50727 6.55446 6.59992 6.84943 6.98569 7.04630 7.11016 7.51432 7.65943 7.90341 7.92252 8.14126 8.36503 8.56902 8.71740 8.81384 9.70702 10.05745 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003184 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.483944 B = 8792.052512 C = 9639.472602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.050 4.050 11 N -0.446 5.446 12 C -0.100 4.100 13 C 0.173 3.827 14 N -0.756 5.756 15 C 0.140 3.860 16 C -0.145 4.145 17 C 0.107 3.893 18 N -0.456 5.456 19 C -0.056 4.056 20 C -0.034 4.034 21 N -0.499 5.499 22 C 0.181 3.819 23 C -0.209 4.209 24 H 0.280 0.720 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.391 0.609 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.203 0.797 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 -6.281 -8.694 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.215 4.215 11 N -0.153 5.153 12 C -0.259 4.259 13 C 0.072 3.928 14 N -0.391 5.391 15 C 0.013 3.987 16 C -0.184 4.184 17 C -0.016 4.016 18 N -0.139 5.139 19 C -0.189 4.189 20 C -0.182 4.182 21 N -0.217 5.217 22 C -0.101 4.101 23 C -0.240 4.240 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.224 0.776 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.220 0.780 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.067 -7.026 -8.294 14.155 hybrid contribution 0.671 1.858 -0.430 2.021 sum -8.397 -5.169 -8.723 13.165 Atomic orbital electron populations 1.69842 1.07695 1.29197 1.34405 1.25967 0.94751 1.01520 0.92074 0.86237 0.81099 0.80697 0.78600 1.18213 1.19708 1.19901 1.19593 0.98148 0.90923 1.39291 0.89892 1.18283 0.91051 0.93429 0.88330 1.22342 1.03577 0.88069 1.07511 1.66824 1.06881 1.32113 1.09467 1.21200 1.00082 0.94314 1.10259 1.18659 0.86951 0.95636 0.91560 1.44264 1.30320 1.06187 1.58293 1.20921 0.92412 0.88045 0.97282 1.22127 0.98150 0.96819 1.01281 1.21855 0.86031 0.98313 0.95360 1.45636 1.09163 1.52346 1.06733 1.22772 1.00851 1.11425 0.83833 1.22300 0.90228 1.07668 0.98031 1.70288 1.33393 1.20000 0.98066 1.25033 0.79937 1.04834 1.00314 1.21084 1.01737 0.95058 1.06093 0.90878 0.85899 0.86882 0.77567 0.92829 0.92743 0.90556 0.90705 0.88596 0.88334 0.81002 0.81522 0.77995 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.55 10.91 55.55 0.61 -18.94 16 2 C 0.08 1.83 5.18 -17.34 -0.09 1.74 16 3 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.45 -11.54 9.08 -37.73 -0.34 -11.88 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.09 2.48 5.60 -106.70 -0.60 1.88 16 10 C -0.05 -1.27 10.97 -16.74 -0.18 -1.46 16 11 N -0.45 -11.08 10.33 -12.37 -0.13 -11.21 16 12 C -0.10 -2.27 10.49 -17.08 -0.18 -2.45 16 13 C 0.17 3.85 6.66 -83.70 -0.56 3.30 16 14 N -0.76 -13.01 5.74 -58.57 -0.34 -13.35 16 15 C 0.14 1.75 4.92 -4.04 -0.02 1.73 16 16 C -0.15 -1.37 5.65 -26.73 -0.15 -1.52 16 17 C 0.11 0.79 6.15 -4.04 -0.02 0.77 16 18 N -0.46 -4.25 2.75 -118.58 -0.33 -4.58 16 19 C -0.06 -0.52 11.58 -16.56 -0.19 -0.72 16 20 C -0.03 -0.37 11.87 -17.82 -0.21 -0.59 16 21 N -0.50 -6.37 11.25 -14.67 -0.17 -6.53 16 22 C 0.18 1.88 12.56 -90.38 -1.14 0.75 16 23 C -0.21 -5.26 8.67 -38.39 -0.33 -5.59 16 24 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 25 H 0.12 2.91 8.06 -52.48 -0.42 2.48 16 26 H 0.11 2.26 6.73 -52.49 -0.35 1.91 16 27 H 0.39 6.40 8.49 -40.82 -0.35 6.06 16 28 H 0.05 0.67 7.96 -51.93 -0.41 0.25 16 29 H 0.05 0.69 7.96 -51.93 -0.41 0.28 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.20 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.13 3.20 6.19 -52.49 -0.32 2.88 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -30.74 319.59 -9.36 -40.10 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.78 Total: 10.79 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -4.02 Total: -14.04 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.35 Total: -54.60 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.74 -9.36 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161684708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.325 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds