Wall clock time and date at job start Mon Mar 30 2020 20:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 120.00313 * 2 1 4 4 H 1.48500 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47209 * 299.99907 * 3 2 1 6 6 H 1.48498 * 109.47444 * 60.00095 * 3 2 1 7 7 C 1.39942 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99275 * 197.50469 * 7 2 1 9 9 C 1.41417 * 120.00012 * 17.50562 * 7 2 1 10 10 C 1.40797 * 120.62255 * 203.41408 * 9 7 2 11 11 N 1.31469 * 120.56849 * 179.97438 * 10 9 7 12 12 C 1.32014 * 122.05265 * 359.97438 * 11 10 9 13 13 C 1.39301 * 121.21032 * 359.97438 * 12 11 10 14 14 N 1.39718 * 120.36110 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00037 * 0.03094 * 14 13 12 16 16 C 1.53000 * 109.46965 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47202 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47222 * 179.97438 * 17 16 15 19 19 C 1.36888 * 126.39487 * 90.00593 * 18 17 16 20 20 C 1.34664 * 106.81495 * 179.97438 * 19 18 17 21 21 N 1.34125 * 108.02222 * 359.97438 * 20 19 18 22 22 C 1.30496 * 109.25670 * 359.72892 * 21 20 19 23 23 C 1.38691 * 119.27633 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.71988 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.39587 * 180.02562 * 12 11 10 27 27 H 0.97001 * 120.00534 * 180.02562 * 14 13 12 28 28 H 1.09000 * 109.47001 * 299.98932 * 15 14 13 29 29 H 1.08997 * 109.47326 * 59.99550 * 15 14 13 30 30 H 1.08996 * 109.47485 * 299.99893 * 16 15 14 31 31 H 1.09005 * 109.46958 * 60.00244 * 16 15 14 32 32 H 1.08996 * 109.47169 * 300.00522 * 17 16 15 33 33 H 1.08997 * 109.46851 * 60.00228 * 17 16 15 34 34 H 1.07994 * 126.58967 * 359.96005 * 19 18 17 35 35 H 1.07999 * 125.99059 * 180.02562 * 20 19 18 36 36 H 1.08009 * 125.65482 * 180.29000 * 22 21 20 37 37 H 1.07995 * 120.92847 * 179.72455 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0504 -1.2337 0.2808 9 6 1.3499 -2.4081 -0.3695 10 6 1.8313 -3.6563 0.0695 11 7 1.2184 -4.7676 -0.2737 12 6 0.1391 -4.7664 -1.0339 13 6 -0.4059 -3.5769 -1.5117 14 7 -1.5486 -3.5963 -2.3155 15 6 -2.1805 -4.8725 -2.6596 16 6 -3.4038 -4.6144 -3.5415 17 6 -4.0635 -5.9471 -3.9014 18 7 -5.2351 -5.7000 -4.7454 19 6 -5.2519 -5.6335 -6.1126 20 6 -6.5259 -5.3911 -6.4752 21 7 -7.2670 -5.3123 -5.3600 22 6 -6.5016 -5.5024 -4.3204 23 6 0.1986 -2.3731 -1.1817 24 1 -0.4850 0.8401 -0.0004 25 1 2.7116 -3.7012 0.6936 26 1 -0.3304 -5.7049 -1.2893 27 1 -1.9236 -2.7649 -2.6458 28 1 -1.4684 -5.4967 -3.1993 29 1 -2.4916 -5.3815 -1.7474 30 1 -4.1159 -3.9903 -3.0016 31 1 -3.0930 -4.1051 -4.4539 32 1 -3.3512 -6.5709 -4.4415 33 1 -4.3741 -6.4567 -2.9894 34 1 -4.4059 -5.7523 -6.7732 35 1 -6.8878 -5.2804 -7.4867 36 1 -6.8265 -5.4992 -3.2903 37 1 -0.1988 -1.4354 -1.5412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161684708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:07 Heat of formation + Delta-G solvation = 65.628168 kcal Electronic energy + Delta-G solvation = -19229.060969 eV Core-core repulsion = 16198.922849 eV Total energy + Delta-G solvation = -3030.138120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.90820 -40.28667 -37.67677 -35.92934 -35.46127 -32.60494 -32.05062 -30.36439 -29.48465 -27.54238 -26.17763 -24.05561 -22.90334 -22.24753 -22.24293 -21.67087 -19.18893 -18.28404 -17.71670 -17.20049 -16.61314 -16.52531 -16.41144 -15.96357 -15.25511 -15.04972 -14.72816 -14.69996 -14.41860 -14.09527 -13.61632 -13.53184 -13.32642 -13.27536 -13.09152 -12.73012 -12.52348 -12.17868 -12.11336 -11.74401 -11.18363 -11.07321 -10.93929 -10.58263 -10.00527 -9.71079 -9.43684 -8.70198 -8.11154 -6.44108 0.93125 1.15577 1.20449 1.39873 1.52575 1.55680 1.88691 2.19713 2.23862 2.71256 2.78013 3.73328 3.81129 3.85148 3.90214 4.01701 4.18554 4.28194 4.28440 4.45537 4.61772 4.64400 4.67439 4.78873 4.87401 4.97521 4.99270 5.05175 5.19301 5.31350 5.38333 5.70808 5.84342 5.88057 6.01414 6.29545 6.34879 6.72808 6.82105 6.83239 7.04899 7.15764 7.81850 8.26807 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003184 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.483944 B = 8792.052512 C = 9639.472602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.069 3.931 10 C -0.079 4.079 11 N -0.455 5.455 12 C -0.104 4.104 13 C 0.185 3.815 14 N -0.749 5.749 15 C 0.135 3.865 16 C -0.130 4.130 17 C 0.111 3.889 18 N -0.456 5.456 19 C -0.052 4.052 20 C -0.062 4.062 21 N -0.541 5.541 22 C 0.173 3.827 23 C -0.236 4.236 24 H 0.289 0.711 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.394 0.606 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.199 0.801 35 H 0.179 0.821 36 H 0.226 0.774 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -6.594 -9.396 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.512 4.512 8 H 0.101 0.899 9 C 0.064 3.936 10 C -0.243 4.243 11 N -0.162 5.162 12 C -0.265 4.265 13 C 0.081 3.919 14 N -0.381 5.381 15 C 0.011 3.989 16 C -0.168 4.168 17 C -0.011 4.011 18 N -0.138 5.138 19 C -0.185 4.185 20 C -0.208 4.208 21 N -0.260 5.260 22 C -0.110 4.110 23 C -0.267 4.267 24 H 0.100 0.900 25 H 0.145 0.855 26 H 0.163 0.837 27 H 0.228 0.772 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.216 0.784 35 H 0.196 0.804 36 H 0.242 0.758 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.434 -7.363 -9.011 14.981 hybrid contribution 0.661 1.860 -0.266 1.992 sum -8.773 -5.503 -9.277 13.904 Atomic orbital electron populations 1.69881 1.09046 1.30627 1.34352 1.26802 0.95518 1.04575 0.91013 0.85115 0.79530 0.75911 0.78924 1.18022 1.18902 1.19063 1.19850 0.98452 0.91993 1.40904 0.89940 1.18611 0.91925 0.94086 0.88949 1.22424 1.04597 0.88268 1.09023 1.66825 1.07613 1.31914 1.09882 1.21726 0.99552 0.95720 1.09454 1.18678 0.87754 0.94549 0.90959 1.44423 1.28676 1.08419 1.56598 1.21167 0.93545 0.85905 0.98327 1.21939 0.96630 0.98025 1.00231 1.21939 0.85681 0.97183 0.96284 1.45743 1.09279 1.51885 1.06873 1.23201 1.01100 1.09986 0.84252 1.22670 0.91067 1.08697 0.98411 1.70246 1.34987 1.21518 0.99290 1.25513 0.80288 1.04254 1.00920 1.21070 1.02518 0.95726 1.07416 0.90008 0.85514 0.83690 0.77156 0.91787 0.92035 0.91173 0.91099 0.86731 0.86427 0.78442 0.80424 0.75791 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.83 10.91 21.83 0.24 -40.60 16 2 C 0.04 1.81 5.18 85.26 0.44 2.25 16 3 Si 0.98 36.70 29.59 68.60 2.03 38.73 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.48 -25.41 9.08 23.47 0.21 -25.20 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.07 3.75 5.60 -21.21 -0.12 3.63 16 10 C -0.08 -4.13 10.97 85.37 0.94 -3.20 16 11 N -0.46 -22.54 10.33 -193.04 -1.99 -24.53 16 12 C -0.10 -4.62 10.49 84.92 0.89 -3.73 16 13 C 0.18 8.08 6.66 38.25 0.25 8.34 16 14 N -0.75 -24.43 5.74 -339.23 -1.95 -26.38 16 15 C 0.14 2.97 4.92 86.38 0.43 3.40 16 16 C -0.13 -2.05 5.65 30.60 0.17 -1.88 16 17 C 0.11 1.24 6.15 86.38 0.53 1.77 16 18 N -0.46 -7.28 2.75 -529.07 -1.46 -8.74 16 19 C -0.05 -0.86 11.58 83.08 0.96 0.10 16 20 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 21 N -0.54 -13.39 11.25 -200.32 -2.25 -15.65 16 22 C 0.17 3.29 12.56 180.26 2.26 5.56 16 23 C -0.24 -12.05 8.67 23.04 0.20 -11.85 16 24 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 25 H 0.13 6.23 8.06 -2.91 -0.02 6.20 16 26 H 0.15 5.36 6.73 -2.91 -0.02 5.34 16 27 H 0.39 12.41 8.49 -92.71 -0.79 11.62 16 28 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 29 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.11 5.93 6.19 -2.91 -0.02 5.91 16 Total: -1.00 -67.49 319.59 3.08 -64.42 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.29 Total: 33.83 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 8.17 Total: -21.09 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -7.41 Total: -115.89 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -67.49 3.08 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161684708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.044 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds