Wall clock time and date at job start Mon Mar 30 2020 19:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47321 * 269.99648 * 3 2 1 5 5 H 1.48505 * 109.47299 * 30.00172 * 3 2 1 6 6 H 1.48506 * 109.47161 * 149.99818 * 3 2 1 7 7 C 1.37878 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00479 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47145 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47037 * 180.02562 * 11 10 9 13 13 C 1.81396 * 103.00025 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47208 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.42898 * 114.00186 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.54267 * 110.03373 * 292.91285 * 17 16 15 19 19 C 1.54968 * 104.16137 * 217.13581 * 18 17 16 20 20 C 1.54884 * 102.77441 * 37.88396 * 19 18 17 21 21 C 1.53874 * 110.03593 * 175.69205 * 17 16 15 22 22 H 0.96995 * 119.99945 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46486 * 60.00389 * 9 7 2 24 24 H 1.09000 * 109.47055 * 300.00467 * 9 7 2 25 25 H 1.09009 * 109.46930 * 60.00233 * 10 9 7 26 26 H 1.09001 * 109.47006 * 300.00496 * 10 9 7 27 27 H 1.09000 * 109.47129 * 60.00417 * 11 10 9 28 28 H 1.09000 * 109.46961 * 300.00266 * 11 10 9 29 29 H 1.08998 * 109.47195 * 59.99567 * 13 12 11 30 30 H 1.09000 * 109.47299 * 299.99892 * 13 12 11 31 31 H 1.09001 * 109.47081 * 60.00157 * 14 13 12 32 32 H 1.08999 * 109.47384 * 299.99850 * 14 13 12 33 33 H 1.09002 * 109.47259 * 300.00293 * 16 15 14 34 34 H 1.09001 * 109.47074 * 60.00315 * 16 15 14 35 35 H 1.09004 * 110.01939 * 54.29674 * 17 16 15 36 36 H 1.09001 * 110.48609 * 335.77840 * 18 17 16 37 37 H 1.08999 * 110.49311 * 98.42344 * 18 17 16 38 38 H 1.08997 * 110.72048 * 279.57487 * 19 18 17 39 39 H 1.08993 * 110.92252 * 156.29196 * 19 18 17 40 40 H 1.09009 * 110.48779 * 203.40596 * 20 19 18 41 41 H 1.09001 * 110.59973 * 80.82109 * 20 19 18 42 42 H 1.09003 * 110.03243 * 238.56963 * 21 17 16 43 43 H 1.09004 * 110.03196 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 16 6.1562 -4.3469 -0.0005 13 6 7.9586 -4.1425 0.0004 14 6 8.6279 -5.5183 0.0007 15 8 10.0478 -5.3573 0.0008 16 6 10.7724 -6.5889 0.0016 17 6 12.2743 -6.2970 0.0023 18 6 12.6861 -5.6428 -1.3327 19 6 14.0819 -6.2443 -1.6350 20 6 13.9326 -7.7113 -1.1610 21 6 13.0667 -7.6115 0.1118 22 1 -0.4850 0.8400 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1506 -0.8898 26 1 3.6585 -3.1502 0.8903 27 1 5.9148 -2.1228 0.8901 28 1 5.9149 -2.1228 -0.8899 29 1 8.2613 -3.5914 0.8908 30 1 8.2621 -3.5906 -0.8891 31 1 8.3252 -6.0697 -0.8895 32 1 8.3243 -6.0699 0.8905 33 1 10.5136 -7.1622 0.8919 34 1 10.5140 -7.1631 -0.8881 35 1 12.5261 -5.6388 0.8339 36 1 11.9794 -5.9049 -2.1200 37 1 12.7520 -4.5603 -1.2228 38 1 14.8552 -5.7307 -1.0637 39 1 14.3006 -6.2034 -2.7020 40 1 14.9081 -8.1376 -0.9264 41 1 13.4283 -8.3099 -1.9196 42 1 13.7037 -7.5909 0.9961 43 1 12.3813 -8.4574 0.1649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419599607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:07 Heat of formation + Delta-G solvation = -89.661150 kcal Electronic energy + Delta-G solvation = -17704.570167 eV Core-core repulsion = 14874.389740 eV Total energy + Delta-G solvation = -2830.180427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.155 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21084 -37.46461 -34.60513 -32.09478 -32.09092 -29.98117 -29.04079 -28.07161 -24.75828 -23.75654 -22.63507 -21.06874 -20.19252 -19.97510 -17.31903 -16.79731 -16.51440 -15.92197 -15.79991 -15.45795 -14.86769 -14.47648 -14.26785 -13.99747 -13.70269 -13.36112 -13.02350 -12.45536 -12.30748 -12.09625 -11.94261 -11.75982 -11.55565 -11.42389 -11.40723 -11.22446 -11.08002 -10.95990 -10.87183 -10.79895 -10.07301 -9.88671 -9.85851 -9.74878 -9.57974 -9.22595 -8.55546 -7.55518 -6.05545 -4.04109 1.62204 2.73935 3.29497 3.37005 3.39847 3.49686 4.20469 4.22340 4.38760 4.43528 4.72077 4.74143 4.86287 5.00295 5.06602 5.08046 5.17602 5.22026 5.27370 5.28608 5.32004 5.37451 5.39945 5.47276 5.50271 5.52957 5.60392 5.63428 5.71148 5.87835 5.91552 5.96365 6.02925 6.39045 6.48479 6.79961 6.90409 7.23436 7.35745 7.75664 8.51896 8.99291 9.56152 11.07833 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.049893 B = 0.002160 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.063880 B =12961.612799 C =13336.736995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.088 4.088 11 C -0.073 4.073 12 S -0.265 6.265 13 C -0.091 4.091 14 C 0.082 3.918 15 O -0.386 6.386 16 C 0.070 3.930 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.119 4.119 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.530 -14.394 -1.059 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.127 4.127 11 C -0.221 4.221 12 S -0.038 6.038 13 C -0.240 4.240 14 C 0.005 3.995 15 O -0.306 6.306 16 C -0.007 4.007 17 C -0.110 4.110 18 C -0.152 4.152 19 C -0.166 4.166 20 C -0.163 4.163 21 C -0.157 4.157 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.898 -15.051 -1.051 31.716 hybrid contribution 0.873 1.822 0.022 2.021 sum 28.771 -13.228 -1.029 31.683 Atomic orbital electron populations 1.69913 1.06280 1.26909 1.50996 1.25030 0.94756 0.99169 0.94550 0.86769 0.80329 0.83614 0.78509 1.20267 1.21330 1.19058 1.21106 0.89257 0.94606 1.50961 0.90888 1.19576 0.97329 0.91349 0.96434 1.21290 0.88280 1.00583 1.02508 1.23650 1.02074 0.91907 1.04517 1.86788 1.02351 1.16440 1.98181 1.23157 0.94736 1.00198 1.05885 1.22064 0.80542 0.95605 1.01311 1.87859 1.17143 1.30057 1.95506 1.22660 0.91569 0.86316 1.00141 1.21778 0.92606 0.97335 0.99324 1.22381 0.96238 1.00178 0.96377 1.22545 0.97472 0.95626 1.00920 1.22362 0.99633 0.97072 0.97216 1.22140 0.98269 0.96754 0.98490 0.92697 0.96434 0.96878 0.91710 0.91691 0.90368 0.90379 0.89536 0.89524 0.92418 0.92408 0.93341 0.93182 0.90185 0.91456 0.91364 0.91554 0.91589 0.91690 0.91607 0.91389 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 10 C -0.09 -1.75 5.16 -26.73 -0.14 -1.89 16 11 C -0.07 -1.20 5.94 37.16 0.22 -0.98 16 12 S -0.26 -3.94 21.74 -107.50 -2.34 -6.27 16 13 C -0.09 -1.10 6.31 37.16 0.23 -0.87 16 14 C 0.08 0.89 5.95 37.16 0.22 1.11 16 15 O -0.39 -4.21 10.18 -35.23 -0.36 -4.56 16 16 C 0.07 0.59 4.98 37.16 0.19 0.77 16 17 C -0.09 -0.68 3.19 -89.50 -0.29 -0.97 16 18 C -0.11 -0.86 6.22 -25.03 -0.16 -1.01 16 19 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 20 C -0.13 -0.70 6.83 -25.08 -0.17 -0.87 16 21 C -0.12 -0.70 6.46 -25.61 -0.17 -0.87 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 24 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 25 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.39 8.02 -51.93 -0.42 -0.02 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.54 7.77 -51.93 -0.40 0.13 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.36 7.67 -51.93 -0.40 -0.04 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -30.33 356.01 -10.33 -40.66 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -8.34 Total: -4.78 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.77 Total: -20.26 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.34 Total: -6.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.33 -10.33 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419599607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.002 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds