Wall clock time and date at job start Mon Mar 30 2020 19:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47321 * 269.99648 * 3 2 1 5 5 H 1.48505 * 109.47299 * 30.00172 * 3 2 1 6 6 H 1.48506 * 109.47161 * 149.99818 * 3 2 1 7 7 C 1.37878 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00479 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47145 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47037 * 180.02562 * 11 10 9 13 13 C 1.81396 * 103.00025 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47208 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.42898 * 114.00186 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.54267 * 110.03373 * 292.91285 * 17 16 15 19 19 C 1.54968 * 104.16137 * 217.13581 * 18 17 16 20 20 C 1.54884 * 102.77441 * 37.88396 * 19 18 17 21 21 C 1.53874 * 110.03593 * 175.69205 * 17 16 15 22 22 H 0.96995 * 119.99945 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46486 * 60.00389 * 9 7 2 24 24 H 1.09000 * 109.47055 * 300.00467 * 9 7 2 25 25 H 1.09009 * 109.46930 * 60.00233 * 10 9 7 26 26 H 1.09001 * 109.47006 * 300.00496 * 10 9 7 27 27 H 1.09000 * 109.47129 * 60.00417 * 11 10 9 28 28 H 1.09000 * 109.46961 * 300.00266 * 11 10 9 29 29 H 1.08998 * 109.47195 * 59.99567 * 13 12 11 30 30 H 1.09000 * 109.47299 * 299.99892 * 13 12 11 31 31 H 1.09001 * 109.47081 * 60.00157 * 14 13 12 32 32 H 1.08999 * 109.47384 * 299.99850 * 14 13 12 33 33 H 1.09002 * 109.47259 * 300.00293 * 16 15 14 34 34 H 1.09001 * 109.47074 * 60.00315 * 16 15 14 35 35 H 1.09004 * 110.01939 * 54.29674 * 17 16 15 36 36 H 1.09001 * 110.48609 * 335.77840 * 18 17 16 37 37 H 1.08999 * 110.49311 * 98.42344 * 18 17 16 38 38 H 1.08997 * 110.72048 * 279.57487 * 19 18 17 39 39 H 1.08993 * 110.92252 * 156.29196 * 19 18 17 40 40 H 1.09009 * 110.48779 * 203.40596 * 20 19 18 41 41 H 1.09001 * 110.59973 * 80.82109 * 20 19 18 42 42 H 1.09003 * 110.03243 * 238.56963 * 21 17 16 43 43 H 1.09004 * 110.03196 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 16 6.1562 -4.3469 -0.0005 13 6 7.9586 -4.1425 0.0004 14 6 8.6279 -5.5183 0.0007 15 8 10.0478 -5.3573 0.0008 16 6 10.7724 -6.5889 0.0016 17 6 12.2743 -6.2970 0.0023 18 6 12.6861 -5.6428 -1.3327 19 6 14.0819 -6.2443 -1.6350 20 6 13.9326 -7.7113 -1.1610 21 6 13.0667 -7.6115 0.1118 22 1 -0.4850 0.8400 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1506 -0.8898 26 1 3.6585 -3.1502 0.8903 27 1 5.9148 -2.1228 0.8901 28 1 5.9149 -2.1228 -0.8899 29 1 8.2613 -3.5914 0.8908 30 1 8.2621 -3.5906 -0.8891 31 1 8.3252 -6.0697 -0.8895 32 1 8.3243 -6.0699 0.8905 33 1 10.5136 -7.1622 0.8919 34 1 10.5140 -7.1631 -0.8881 35 1 12.5261 -5.6388 0.8339 36 1 11.9794 -5.9049 -2.1200 37 1 12.7520 -4.5603 -1.2228 38 1 14.8552 -5.7307 -1.0637 39 1 14.3006 -6.2034 -2.7020 40 1 14.9081 -8.1376 -0.9264 41 1 13.4283 -8.3099 -1.9196 42 1 13.7037 -7.5909 0.9961 43 1 12.3813 -8.4574 0.1649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419599607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:07 Heat of formation + Delta-G solvation = -104.977740 kcal Electronic energy + Delta-G solvation = -17705.234344 eV Core-core repulsion = 14874.389740 eV Total energy + Delta-G solvation = -2830.844604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83956 -38.13641 -36.40990 -34.16660 -32.88806 -30.64078 -29.92153 -29.53920 -25.51125 -25.16252 -23.87972 -21.91526 -21.55263 -20.55112 -18.95785 -18.07221 -17.30680 -16.97895 -16.54494 -16.31250 -16.28561 -16.05099 -15.22941 -14.99347 -14.80617 -14.29115 -14.20302 -13.95838 -13.76916 -13.47068 -13.02602 -12.82873 -12.64942 -12.49761 -12.10577 -11.98201 -11.90493 -11.83323 -11.69044 -11.59525 -11.52098 -11.46225 -11.36938 -11.31370 -10.95771 -10.77138 -10.61427 -8.72967 -8.29780 -6.34945 0.50042 1.36768 1.38893 1.50704 1.57349 2.36263 2.75334 3.05343 3.68015 3.71012 3.77941 3.84687 3.98282 4.02071 4.04153 4.30521 4.33961 4.40579 4.49477 4.53449 4.56682 4.64858 4.65268 4.70520 4.75017 4.79058 4.82947 4.84405 4.90548 4.99417 5.05349 5.09048 5.24753 5.34301 5.43343 5.45547 5.48152 5.51633 5.63635 6.15584 6.26626 6.72835 7.29477 8.87137 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.049893 B = 0.002160 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.063880 B =12961.612799 C =13336.736995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.080 4.080 11 C -0.067 4.067 12 S -0.283 6.283 13 C -0.079 4.079 14 C 0.086 3.914 15 O -0.399 6.399 16 C 0.066 3.934 17 C -0.092 4.092 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.117 4.117 22 H 0.267 0.733 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.427 -14.048 -1.044 34.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.119 4.119 11 C -0.215 4.215 12 S -0.057 6.057 13 C -0.227 4.227 14 C 0.008 3.992 15 O -0.320 6.320 16 C -0.011 4.011 17 C -0.110 4.110 18 C -0.154 4.154 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.154 4.154 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 30.809 -14.725 -1.036 34.163 hybrid contribution -0.050 1.595 0.014 1.596 sum 30.760 -13.130 -1.023 33.460 Atomic orbital electron populations 1.70078 1.08414 1.28247 1.52494 1.26084 0.95691 1.03763 0.93996 0.85590 0.79545 0.77798 0.79297 1.19031 1.21029 1.16611 1.21481 0.92156 0.93135 1.50703 0.95257 1.19510 0.93844 0.93992 0.97101 1.21053 0.91279 0.98049 1.01480 1.23410 0.99074 0.93241 1.05752 1.86847 1.05317 1.15251 1.98266 1.23135 0.92017 1.01164 1.06396 1.21983 0.80719 0.94811 1.01662 1.87834 1.17010 1.31512 1.95616 1.22829 0.91822 0.85621 1.00784 1.21795 0.92202 0.98090 0.98931 1.22377 0.97038 0.99688 0.96301 1.22546 0.96616 0.95976 1.01299 1.22376 1.00131 0.96659 0.97035 1.22142 0.98316 0.95989 0.98985 0.92455 0.95564 0.95688 0.92820 0.92836 0.89175 0.89118 0.89010 0.89008 0.92127 0.92064 0.92536 0.92638 0.90889 0.92113 0.92332 0.91278 0.91184 0.90686 0.91473 0.90724 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.07 27.47 68.60 1.88 45.95 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.54 -31.42 9.66 25.60 0.25 -31.18 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 10 C -0.08 -3.15 5.16 30.59 0.16 -2.99 16 11 C -0.07 -2.04 5.94 71.98 0.43 -1.61 16 12 S -0.28 -8.00 21.74 -56.49 -1.23 -9.23 16 13 C -0.08 -1.73 6.31 71.98 0.45 -1.27 16 14 C 0.09 1.69 5.95 71.98 0.43 2.12 16 15 O -0.40 -8.06 10.18 -148.98 -1.52 -9.58 16 16 C 0.07 1.00 4.98 71.98 0.36 1.36 16 17 C -0.09 -1.24 3.19 -10.07 -0.03 -1.27 16 18 C -0.12 -1.63 6.22 31.70 0.20 -1.43 16 19 C -0.13 -1.37 6.91 31.91 0.22 -1.15 16 20 C -0.12 -1.16 6.83 31.67 0.22 -0.94 16 21 C -0.12 -1.16 6.46 31.32 0.20 -0.96 16 22 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 23 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 24 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 25 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.78 8.02 -2.39 -0.02 0.76 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.06 0.92 7.77 -2.39 -0.02 0.90 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.64 7.67 -2.38 -0.02 0.62 16 Total: -1.00 -65.72 356.01 3.77 -61.95 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.87 Total: 9.93 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.46 Total: -38.91 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.52 Total: -9.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.23 Total: -9.23 kcal Total: -65.72 3.77 -61.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419599607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.031 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds