Wall clock time and date at job start Mon Mar 30 2020 19:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47570 * 2 1 4 4 C 1.42902 * 114.00664 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47331 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.50999 * 54.90057 * 5 4 3 7 7 C 1.53293 * 109.51267 * 174.99845 * 5 4 3 8 8 N 1.47153 * 108.38640 * 172.27881 * 7 5 4 9 9 C 1.34780 * 120.98138 * 129.44182 * 8 7 5 10 10 O 1.21583 * 119.99737 * 4.98548 * 9 8 7 11 11 N 1.34778 * 119.99679 * 184.97802 * 9 8 7 12 12 C 1.46502 * 119.99773 * 174.91569 * 11 9 8 13 13 C 1.50700 * 109.47232 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99708 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99684 * 180.27810 * 13 12 11 16 16 N 1.31506 * 120.00553 * 359.71983 * 15 13 12 17 17 Si 1.86806 * 119.99437 * 179.72558 * 15 13 12 18 18 H 1.48505 * 109.47232 * 90.00199 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99453 * 17 15 13 20 20 H 1.48499 * 109.47419 * 329.99651 * 17 15 13 21 21 C 1.47156 * 118.03532 * 309.71974 * 8 7 5 22 22 C 1.52879 * 108.60576 * 50.22711 * 21 8 7 23 23 O 1.42957 * 109.55872 * 294.77375 * 5 4 3 24 24 H 1.09001 * 109.46712 * 299.99731 * 1 2 3 25 25 H 1.09003 * 109.47240 * 59.99514 * 1 2 3 26 26 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47032 * 240.00305 * 2 1 3 28 28 H 1.09003 * 109.47240 * 120.00486 * 2 1 3 29 29 H 1.08998 * 109.46694 * 59.99925 * 4 3 2 30 30 H 1.08996 * 109.46724 * 300.00491 * 4 3 2 31 31 H 1.09000 * 109.67723 * 52.55639 * 7 5 4 32 32 H 1.09003 * 109.71603 * 292.02307 * 7 5 4 33 33 H 0.96993 * 120.00465 * 354.92039 * 11 9 8 34 34 H 1.09005 * 109.47028 * 60.00050 * 12 11 9 35 35 H 1.09004 * 109.47017 * 300.00241 * 12 11 9 36 36 H 0.97001 * 120.00795 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.67743 * 170.00679 * 21 8 7 38 38 H 1.08995 * 109.67763 * 290.55656 * 21 8 7 39 39 H 1.09002 * 109.57934 * 187.92717 * 22 21 8 40 40 H 1.08990 * 109.37037 * 67.81887 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 3.3488 3.4426 0.8395 7 6 5.3482 3.0619 0.1242 8 7 5.7165 4.4739 -0.0654 9 6 6.5140 5.1075 0.8173 10 8 7.0136 4.4896 1.7375 11 7 6.7576 6.4259 0.6797 12 6 7.5321 7.1380 1.6992 13 6 7.6600 8.5885 1.3109 14 1 7.2098 8.9442 0.3959 15 6 8.3571 9.4599 2.1205 16 7 8.9057 9.0266 3.2344 17 14 8.5222 11.2562 1.6353 18 1 7.3876 12.0285 2.2024 19 1 9.8011 11.7960 2.1629 20 1 8.5091 11.3723 0.1549 21 6 5.1833 5.1755 -1.2440 22 6 3.6728 4.9475 -1.3054 23 8 3.4030 3.5459 -1.2243 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9763 0.8891 31 1 5.8301 2.4511 -0.6393 32 1 5.6640 2.7298 1.1132 33 1 6.4201 6.9034 -0.0942 34 1 8.5243 6.6936 1.7779 35 1 7.0232 7.0630 2.6603 36 1 9.3959 9.6398 3.8042 37 1 5.3892 6.2426 -1.1602 38 1 5.6483 4.7812 -2.1474 39 1 3.2821 5.3397 -2.2443 40 1 3.1957 5.4591 -0.4696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:04 Heat of formation + Delta-G solvation = -141.446402 kcal Electronic energy + Delta-G solvation = -21221.932277 eV Core-core repulsion = 17843.213059 eV Total energy + Delta-G solvation = -3378.719218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57277 -39.83551 -38.63115 -36.27714 -35.79940 -34.41477 -33.59470 -31.75457 -29.83255 -28.93888 -26.69810 -24.62728 -24.25046 -23.64483 -22.39705 -20.91933 -19.74426 -18.11946 -18.07036 -17.72617 -17.21225 -16.83891 -16.58365 -16.52561 -16.14813 -15.92388 -15.39886 -14.93501 -14.85461 -14.40671 -14.18538 -14.10039 -13.78322 -13.47913 -13.12884 -12.89406 -12.72989 -12.71096 -12.42374 -12.26649 -12.20822 -11.97153 -11.77610 -11.48949 -11.28693 -11.10857 -10.81503 -10.56052 -10.05737 -9.43263 -8.29066 -6.45903 1.42850 1.46392 1.53751 1.59317 2.10488 2.37604 2.57652 2.73411 3.05976 3.07271 3.73919 3.87588 3.92916 3.98869 4.16464 4.19608 4.22705 4.39247 4.39903 4.48381 4.53177 4.57665 4.71339 4.76682 4.87765 4.93057 5.03395 5.05992 5.24586 5.28742 5.36378 5.46316 5.62939 5.82001 6.00937 6.06293 6.26880 6.64924 7.08416 7.24031 7.59908 8.83315 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.003225 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.765038 B = 8680.487817 C = 8943.709581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.076 3.924 5 C 0.086 3.914 6 H 0.053 0.947 7 C 0.106 3.894 8 N -0.634 5.634 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.722 5.722 12 C 0.285 3.715 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.986 3.014 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.255 1.255 21 C 0.072 3.928 22 C 0.051 3.949 23 O -0.376 6.376 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.403 0.597 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.937 -14.051 -12.438 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.001 4.001 5 C 0.027 3.973 6 H 0.071 0.929 7 C -0.017 4.017 8 N -0.373 5.373 9 C 0.397 3.603 10 O -0.525 6.525 11 N -0.377 5.377 12 C 0.162 3.838 13 C -0.593 4.593 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.051 4.051 22 C -0.027 4.027 23 O -0.295 6.295 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.241 0.759 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.158 0.842 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.681 -14.357 -11.762 23.664 hybrid contribution 0.624 0.985 0.331 1.212 sum -14.058 -13.372 -11.431 22.519 Atomic orbital electron populations 1.21764 0.93111 1.03348 1.02499 1.22689 0.96270 0.82654 1.01108 1.87901 1.20908 1.28269 1.95649 1.22402 0.81943 0.93140 1.02603 1.22382 0.92561 0.94509 0.87845 0.92927 1.22023 0.94485 0.81116 1.04114 1.47277 1.51642 1.12527 1.25814 1.16171 0.79761 0.82350 0.82012 1.90824 1.57569 1.67015 1.37109 1.45465 1.57979 1.06745 1.27535 1.18446 0.88737 0.90934 0.85692 1.21569 1.35759 0.92934 1.09008 0.89820 1.26067 0.94228 1.04842 0.94414 1.70136 1.35216 1.37784 1.13750 0.85136 0.77598 0.77086 0.79252 1.19562 1.20969 1.17839 1.22530 0.95872 0.98589 0.88062 1.23044 0.93329 0.81848 1.04433 1.87975 1.81830 1.22574 1.37130 0.92645 0.92447 0.88966 0.92210 0.92364 0.90754 0.90031 0.88974 0.89535 0.75919 0.99572 0.99632 0.92197 0.88520 0.88578 0.84234 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.75 6.66 71.98 0.48 1.22 16 3 O -0.41 -9.09 10.31 -144.75 -1.49 -10.58 16 4 C 0.08 1.49 5.61 71.98 0.40 1.89 16 5 C 0.09 2.09 3.06 30.69 0.09 2.18 16 6 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 7 C 0.11 2.86 5.91 86.35 0.51 3.37 16 8 N -0.63 -20.16 3.03 -836.14 -2.53 -22.69 16 9 C 0.70 30.24 8.31 179.05 1.49 31.73 16 10 O -0.64 -33.88 15.84 -3.98 -0.06 -33.95 16 11 N -0.72 -32.00 5.46 -482.28 -2.63 -34.64 16 12 C 0.29 16.00 5.43 85.63 0.47 16.46 16 13 C -0.55 -30.32 9.28 25.60 0.24 -30.08 16 14 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.23 5.46 84.65 0.46 0.69 16 16 N -0.93 -56.32 13.28 21.44 0.28 -56.04 16 17 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 C 0.07 1.64 6.60 86.21 0.57 2.21 16 22 C 0.05 1.03 6.97 71.94 0.50 1.53 16 23 O -0.38 -9.07 10.36 -144.75 -1.50 -10.57 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.65 7.12 -2.39 -0.02 2.63 16 33 H 0.40 14.77 5.83 -92.71 -0.54 14.23 16 34 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 35 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.10 2.10 5.67 -2.39 -0.01 2.09 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -75.71 331.22 0.53 -75.19 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.48 Total: 19.10 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 5.95 Total: 29.98 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.88 Total: -113.37 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -3.05 Total: -55.10 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -75.71 0.53 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.259 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds