Wall clock time and date at job start Mon Mar 30 2020 19:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99997 * 2 1 4 4 C 1.52994 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46917 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47132 * 55.00563 * 5 4 3 7 7 N 1.46893 * 109.47149 * 294.99895 * 5 4 3 8 8 C 1.50704 * 109.46998 * 175.00019 * 5 4 3 9 9 O 1.21280 * 119.99752 * 100.00011 * 8 5 4 10 10 N 1.34777 * 119.99939 * 279.99850 * 8 5 4 11 11 C 1.47020 * 125.64905 * 0.05014 * 10 8 5 12 12 C 1.54370 * 107.28887 * 181.05410 * 11 10 8 13 13 C 1.55157 * 102.91958 * 22.13297 * 12 11 10 14 14 O 1.42895 * 111.00438 * 82.64584 * 13 12 11 15 15 C 1.50702 * 111.00274 * 206.45611 * 13 12 11 16 16 H 1.08002 * 120.00299 * 115.42388 * 15 13 12 17 17 C 1.37884 * 119.99942 * 295.13946 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47421 * 125.64804 * 179.97438 * 10 8 5 24 24 H 1.08993 * 109.47024 * 300.00714 * 1 2 3 25 25 H 1.08999 * 109.46818 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46893 * 59.99322 * 3 2 1 28 28 H 1.08999 * 109.46689 * 299.99638 * 3 2 1 29 29 H 1.09004 * 109.47266 * 60.00376 * 4 3 2 30 30 H 1.08999 * 109.47769 * 299.99896 * 4 3 2 31 31 H 1.00894 * 111.00532 * 300.00186 * 7 5 4 32 32 H 1.00902 * 110.99697 * 63.95818 * 7 5 4 33 33 H 1.09004 * 109.87999 * 300.43222 * 11 10 8 34 34 H 1.09002 * 109.88457 * 61.60007 * 11 10 8 35 35 H 1.09001 * 110.70315 * 263.78979 * 12 11 10 36 36 H 1.08995 * 110.75842 * 140.49991 * 12 11 10 37 37 H 0.96695 * 114.00567 * 64.57510 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.36626 * 37.07046 * 23 10 8 40 40 H 1.09004 * 110.37374 * 274.75199 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7669 3.1545 0.8413 7 7 3.8228 3.2670 -1.2557 8 6 5.6551 2.4656 0.1245 9 8 6.3550 2.5631 -0.8613 10 7 6.2165 2.2530 1.3312 11 6 5.4900 2.1148 2.6018 12 6 6.5427 1.9116 3.7125 13 6 7.8291 2.5104 3.0848 14 8 7.8622 3.9303 3.2410 15 6 9.0629 1.8762 3.6736 16 1 9.7179 1.2870 3.0488 17 6 9.3588 2.0531 5.0086 18 7 8.5613 2.7705 5.7694 19 14 10.8923 1.2734 5.7366 20 1 12.0327 2.2166 5.6147 21 1 10.6573 0.9635 7.1698 22 1 11.2059 0.0202 5.0042 23 6 7.6606 2.1188 1.5954 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8575 0.6436 -0.8892 30 1 3.8568 0.6439 0.8908 31 1 4.1746 2.7559 -2.0513 32 1 2.8276 3.4151 -1.3324 33 1 4.9134 3.0185 2.7993 34 1 4.8261 1.2514 2.5573 35 1 6.6760 0.8514 3.9278 36 1 6.2635 2.4572 4.6138 37 1 7.9174 4.2237 4.1607 38 1 8.7693 2.8946 6.7087 39 1 8.2275 2.7977 0.9582 40 1 7.9818 1.0896 1.4348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578999157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:40 Heat of formation + Delta-G solvation = -131.945594 kcal Electronic energy + Delta-G solvation = -21865.905598 eV Core-core repulsion = 18487.598366 eV Total energy + Delta-G solvation = -3378.307233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78752 -38.26753 -37.35277 -35.27941 -34.30109 -32.18832 -30.42305 -29.86729 -28.45181 -27.07290 -25.93737 -24.50735 -22.58591 -21.50375 -19.72219 -18.80937 -17.56067 -17.08383 -16.56547 -16.29785 -15.61071 -15.11785 -14.98485 -14.96348 -14.71190 -14.15572 -13.89233 -13.86032 -13.18639 -12.89532 -12.54686 -12.28978 -12.01621 -11.80493 -11.69828 -11.47145 -11.33677 -11.29376 -11.27475 -10.90165 -10.60487 -10.47987 -10.04812 -9.96507 -9.46207 -9.37207 -8.76828 -8.67869 -8.22504 -7.98553 -6.30474 -4.38117 2.95147 3.19780 3.27080 3.29338 3.36995 3.64901 4.25772 4.57013 4.64292 4.70577 4.92122 4.95754 5.01482 5.03947 5.07959 5.22882 5.27510 5.37390 5.53205 5.64873 5.77839 5.86017 5.88103 6.04832 6.25699 6.43352 6.64862 6.84418 6.87148 6.90651 7.01625 7.28622 7.31828 7.36842 7.72241 7.99463 8.13391 8.62395 8.66551 9.30478 9.42538 10.77209 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.004258 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.732648 B = 6574.342562 C = 7088.728638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.064 3.936 4 C -0.151 4.151 5 C 0.084 3.916 6 H 0.102 0.898 7 N -0.827 5.827 8 C 0.533 3.467 9 O -0.544 6.544 10 N -0.605 5.605 11 C 0.097 3.903 12 C -0.137 4.137 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.120 3.880 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.352 0.648 32 H 0.341 0.659 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.383 0.617 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.916 -3.111 -6.066 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.191 4.191 5 C -0.031 4.031 6 H 0.120 0.880 7 N -0.359 5.359 8 C 0.320 3.680 9 O -0.422 6.422 10 N -0.337 5.337 11 C -0.026 4.026 12 C -0.176 4.176 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.001 4.001 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.078 -2.561 -6.856 15.867 hybrid contribution -0.079 -1.039 1.054 1.483 sum -14.157 -3.601 -5.801 15.718 Atomic orbital electron populations 1.22753 0.80944 1.02844 1.00004 1.87903 1.19761 1.27802 1.95407 1.22515 0.93619 0.84916 1.00259 1.22265 0.93652 0.98177 1.05000 1.21247 0.93364 0.93245 0.95294 0.87972 1.58502 1.19122 1.54734 1.03499 1.19772 0.89225 0.76831 0.82217 1.90647 1.63828 1.51117 1.36619 1.48569 1.09311 1.69492 1.06370 1.22240 0.96114 0.99519 0.84724 1.23199 0.95825 1.02037 0.96551 1.19598 0.91881 0.79780 0.87968 1.86128 1.96914 1.22911 1.33231 1.21474 1.08651 1.32503 0.94750 0.91672 1.24987 0.96834 0.94427 0.96728 1.69650 1.37207 1.39639 1.07124 0.86406 0.82708 0.79707 0.78101 1.20392 1.21059 1.19695 1.22383 0.79151 1.00406 0.98186 0.93924 0.94112 0.89566 0.92761 0.93427 0.90411 0.89624 0.83342 0.84483 0.92375 0.92773 0.91308 0.89667 0.76652 0.92162 0.91079 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.36 10.70 -35.23 -0.38 -4.74 16 3 C 0.06 0.63 5.71 37.15 0.21 0.84 16 4 C -0.15 -1.81 5.20 -26.73 -0.14 -1.95 16 5 C 0.08 1.16 2.62 -68.86 -0.18 0.98 16 6 H 0.10 1.32 7.46 -51.93 -0.39 0.94 16 7 N -0.83 -10.40 8.94 -5.66 -0.05 -10.45 16 8 C 0.53 10.08 7.10 -10.98 -0.08 10.01 16 9 O -0.54 -12.09 16.51 5.56 0.09 -12.00 16 10 N -0.60 -11.92 3.33 -170.48 -0.57 -12.48 16 11 C 0.10 1.71 6.19 -3.04 -0.02 1.69 16 12 C -0.14 -2.89 5.52 -24.87 -0.14 -3.03 16 13 C 0.25 5.95 0.88 -89.61 -0.08 5.88 16 14 O -0.58 -14.88 13.17 -35.23 -0.46 -15.34 16 15 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 16 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 17 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 18 N -0.90 -22.82 10.76 55.43 0.60 -22.22 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 C 0.12 2.70 6.08 -2.52 -0.02 2.69 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 6.87 -51.93 -0.36 0.03 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.10 6.66 -51.93 -0.35 0.76 16 31 H 0.35 4.49 8.58 -39.30 -0.34 4.16 16 32 H 0.34 3.17 7.55 -39.29 -0.30 2.87 16 33 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 34 H 0.05 0.82 6.76 -51.93 -0.35 0.46 16 35 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 36 H 0.08 1.87 7.69 -51.93 -0.40 1.47 16 37 H 0.38 9.76 7.24 45.56 0.33 10.09 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.07 1.72 8.04 -51.93 -0.42 1.30 16 40 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -29.74 325.66 -6.05 -35.79 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -5.46 Total: 15.44 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 0.30 Total: 6.07 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.02 Total: -45.15 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.75 Total: -32.08 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.74 -6.05 -35.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578999157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.160 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds