Wall clock time and date at job start Mon Mar 30 2020 19:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 N 1.46500 * 109.46998 * 65.00194 * 4 2 1 6 6 C 1.36931 * 120.00396 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99774 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00545 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99833 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00256 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47136 * 89.99695 * 10 8 6 12 12 H 1.48503 * 109.47098 * 209.99762 * 10 8 6 13 13 H 1.48496 * 109.47087 * 329.99418 * 10 8 6 14 14 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 15 15 N 1.46498 * 109.47000 * 294.99574 * 14 2 1 16 16 C 1.34779 * 120.00061 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99793 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00015 * 179.97438 * 16 15 14 19 19 H 1.08988 * 109.52245 * 305.00164 * 18 16 15 20 20 C 1.53148 * 109.52226 * 65.13485 * 18 16 15 21 21 O 1.43070 * 109.14749 * 175.21245 * 20 18 16 22 22 C 1.43070 * 113.59387 * 302.04305 * 21 20 18 23 23 C 1.53148 * 109.14887 * 57.95772 * 22 21 20 24 24 O 1.43068 * 109.52086 * 184.86800 * 18 16 15 25 25 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 26 26 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 27 27 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 29 29 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 30 30 H 0.97010 * 119.99909 * 359.97438 * 5 4 2 31 31 H 0.97001 * 119.99731 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.46920 * 54.99692 * 14 2 1 33 33 H 1.08995 * 109.47278 * 174.99625 * 14 2 1 34 34 H 0.96998 * 120.00099 * 0.02562 * 15 14 2 35 35 H 1.08996 * 109.52100 * 295.11821 * 20 18 16 36 36 H 1.09001 * 109.52107 * 55.30950 * 20 18 16 37 37 H 1.09007 * 109.52310 * 177.85529 * 22 21 20 38 38 H 1.08990 * 109.52844 * 297.98757 * 22 21 20 39 39 H 1.08996 * 109.52409 * 64.59183 * 23 22 21 40 40 H 1.08999 * 109.52229 * 184.71713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 2.0009 -0.4207 -3.6856 7 1 2.5619 -1.3381 -3.7866 8 6 1.6342 0.2964 -4.8161 9 7 0.9510 1.4147 -4.6930 10 14 2.1103 -0.3254 -6.5119 11 1 1.0399 -1.2136 -7.0320 12 1 2.2864 0.8279 -7.4307 13 1 3.3832 -1.0848 -6.4213 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0353 2.4423 16 6 1.9956 -0.4137 3.6659 17 8 2.6256 -1.4439 3.7792 18 6 1.5975 0.3649 4.8933 19 1 1.9576 1.3900 4.8070 20 6 0.0717 0.3676 5.0250 21 8 -0.2924 1.0115 6.2497 22 6 0.2778 0.3991 7.4102 23 6 1.8035 0.3964 7.2784 24 8 2.1689 -0.2466 6.0536 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.1482 0.8591 -2.3518 31 1 0.6944 1.9156 -5.4830 32 1 1.6053 -1.7199 1.2950 33 1 3.1262 -0.7996 1.2055 34 1 1.1484 0.8590 2.3518 35 1 -0.3654 0.9078 4.1853 36 1 -0.2953 -0.6587 5.0299 37 1 -0.0102 0.9623 8.2980 38 1 -0.0833 -0.6256 7.4959 39 1 2.1706 1.4227 7.2736 40 1 2.2408 -0.1428 8.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:13 Heat of formation + Delta-G solvation = -119.121163 kcal Electronic energy + Delta-G solvation = -20983.688946 eV Core-core repulsion = 17605.937822 eV Total energy + Delta-G solvation = -3377.751123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -40.76657 -39.20396 -36.93146 -36.31406 -34.44223 -32.83683 -31.87810 -30.07022 -28.63694 -26.54008 -25.66479 -24.87384 -22.68992 -22.00408 -20.71893 -19.92405 -17.97695 -17.38939 -17.02521 -16.85417 -16.36333 -15.91764 -15.62700 -15.14772 -15.01054 -14.45108 -14.15037 -13.82529 -13.61779 -13.43310 -13.01174 -12.83520 -12.59137 -12.32123 -12.08598 -12.02078 -11.26397 -11.08861 -11.02809 -10.93524 -10.72813 -10.60446 -10.44825 -10.09052 -9.90685 -9.69829 -9.58966 -9.14291 -8.89064 -6.93919 -5.78443 -3.06889 2.38416 2.55884 3.22397 3.43297 3.48588 3.50156 3.61282 4.07824 4.41488 4.46049 4.53323 4.58086 4.65961 4.77492 4.98609 5.00893 5.12865 5.17637 5.28168 5.31734 5.34645 5.56432 5.76468 5.91480 5.93895 6.06427 6.19068 6.32807 6.38648 6.45215 6.51570 6.62569 6.74563 6.83765 7.33476 7.69438 8.04435 8.40772 9.52094 10.09014 10.43754 11.44584 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.051684 B = 0.002821 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.622541 B = 9923.613717 C =10271.169148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.721 5.721 16 C 0.519 3.481 17 O -0.517 6.517 18 C 0.037 3.963 19 H 0.095 0.905 20 C 0.037 3.963 21 O -0.373 6.373 22 C 0.020 3.980 23 C 0.023 3.977 24 O -0.350 6.350 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.023 0.977 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 0.709 24.294 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.004 3.996 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.391 6.391 18 C -0.025 4.025 19 H 0.113 0.887 20 C -0.040 4.040 21 O -0.291 6.291 22 C -0.057 4.057 23 C -0.054 4.054 24 O -0.268 6.268 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.782 -0.163 24.238 24.304 hybrid contribution -0.139 0.435 -0.952 1.056 sum -1.922 0.272 23.285 23.366 Atomic orbital electron populations 1.21800 0.94600 1.02009 1.01531 1.21564 0.96764 1.00568 0.94103 0.90417 1.20573 0.96660 0.94212 0.85326 1.42337 1.66952 1.27683 1.00579 1.19235 1.28707 1.05406 0.83644 0.91146 1.24736 1.01039 0.97382 0.97880 1.69656 1.43623 1.16566 1.28506 0.86175 0.78041 0.77519 0.84382 1.21714 1.21779 1.20747 1.21470 1.00375 0.95264 0.82478 1.45983 1.57817 1.28109 1.05526 1.19858 0.80284 0.85758 0.83839 1.90746 1.38439 1.23634 1.86274 1.22599 0.95111 0.97766 0.86987 0.88737 1.23161 0.92590 0.99828 0.88450 1.88128 1.71531 1.55460 1.14029 1.23327 0.93498 0.99579 0.89271 1.23351 0.95292 0.99104 0.87662 1.88242 1.70907 1.54796 1.12886 0.93931 0.91062 0.92742 0.96080 0.95956 0.78200 0.93519 0.91099 0.91104 0.76418 0.86907 0.91224 0.87384 0.91743 0.91792 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.86 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 5 N -0.73 -18.08 5.33 -59.91 -0.32 -18.40 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 15 N -0.72 -7.92 5.25 -60.29 -0.32 -8.24 16 16 C 0.52 6.64 7.18 -10.98 -0.08 6.56 16 17 O -0.52 -8.97 16.51 -14.26 -0.24 -9.21 16 18 C 0.04 0.37 3.25 -27.80 -0.09 0.28 16 19 H 0.10 0.78 8.14 -51.94 -0.42 0.36 16 20 C 0.04 0.32 6.29 37.23 0.23 0.55 16 21 O -0.37 -3.36 10.85 -48.76 -0.53 -3.89 16 22 C 0.02 0.14 7.05 37.23 0.26 0.40 16 23 C 0.02 0.17 7.05 37.23 0.26 0.43 16 24 O -0.35 -4.08 10.03 -62.49 -0.63 -4.70 16 25 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 26 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.34 7.57 -40.82 -0.31 3.03 16 35 H 0.11 0.72 8.06 -51.93 -0.42 0.31 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -34.43 331.02 -7.30 -41.73 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.37 Total: 5.46 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.41 Total: 2.17 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.09 Total: -53.88 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.39 Total: -17.80 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.43 -7.30 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.393 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds