Wall clock time and date at job start Mon Mar 30 2020 19:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46595 * 2 1 4 4 C 1.52993 * 109.47172 * 120.00325 * 2 1 3 5 5 N 1.46496 * 109.47551 * 294.99743 * 4 2 1 6 6 C 1.36934 * 120.00548 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99288 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00389 * 180.02562 * 6 5 4 9 9 N 1.31624 * 120.00257 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47174 * 270.00277 * 10 8 6 12 12 H 1.48501 * 109.47062 * 30.00228 * 10 8 6 13 13 H 1.48499 * 109.46981 * 150.00382 * 10 8 6 14 14 C 1.53003 * 109.46700 * 240.00553 * 2 1 3 15 15 N 1.46497 * 109.47315 * 64.99821 * 14 2 1 16 16 C 1.34776 * 120.00251 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00393 * 180.02562 * 16 15 14 19 19 H 1.09001 * 109.52401 * 54.99475 * 18 16 15 20 20 C 1.53151 * 109.52304 * 294.86809 * 18 16 15 21 21 O 1.43082 * 109.14279 * 184.85389 * 20 18 16 22 22 C 1.43074 * 113.65280 * 57.85178 * 21 20 18 23 23 C 1.53147 * 109.14707 * 302.08209 * 22 21 20 24 24 O 1.43070 * 109.15132 * 55.31312 * 23 22 21 25 25 H 1.09001 * 109.47529 * 59.99733 * 1 2 3 26 26 H 1.09007 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46739 * 299.99118 * 1 2 3 28 28 H 1.09004 * 109.46862 * 174.99942 * 4 2 1 29 29 H 1.09004 * 109.46998 * 55.00419 * 4 2 1 30 30 H 0.96999 * 119.99694 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46443 * 184.99976 * 14 2 1 33 33 H 1.09001 * 109.46939 * 304.99578 * 14 2 1 34 34 H 0.97006 * 120.00091 * 359.97438 * 15 14 2 35 35 H 1.08996 * 109.52049 * 304.69038 * 20 18 16 36 36 H 1.08997 * 109.52193 * 64.88234 * 20 18 16 37 37 H 1.08997 * 109.52836 * 182.17956 * 22 21 20 38 38 H 1.09001 * 109.57768 * 62.01351 * 22 21 20 39 39 H 1.08999 * 109.52573 * 295.40870 * 23 22 21 40 40 H 1.09002 * 109.52168 * 175.21137 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6526 0.0352 2.4423 6 6 2.0012 -0.4210 3.6855 7 1 2.5622 -1.3384 3.7862 8 6 1.6336 0.2955 4.8161 9 7 1.9692 -0.1428 6.0110 10 14 0.6639 1.8826 4.6417 11 1 1.6036 3.0266 4.5259 12 1 -0.1840 1.8134 3.4245 13 1 -0.1986 2.0694 5.8360 14 6 2.0400 -0.7212 -1.2494 15 7 1.6523 0.0355 -2.4424 16 6 1.9963 -0.4128 -3.6660 17 8 2.6271 -1.4425 -3.7793 18 6 1.5980 0.3658 -4.8932 19 1 1.9572 1.3913 -4.8065 20 6 0.0723 0.3675 -5.0256 21 8 -0.2917 1.0101 -6.2510 22 6 0.2806 0.3995 -7.4115 23 6 1.8063 0.3992 -7.2782 24 8 2.1703 -0.2448 -6.0537 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.1264 -0.7995 1.2054 29 1 1.6055 -1.7199 1.2949 30 1 1.1484 0.8589 2.3518 31 1 1.7126 0.3582 6.8010 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7197 -1.2953 34 1 1.1481 0.8592 -2.3517 35 1 -0.2940 -0.6591 -5.0308 36 1 -0.3656 0.9071 -4.1859 37 1 -0.0075 0.9626 -8.2991 38 1 -0.0776 -0.6263 -7.4987 39 1 2.1716 1.4262 -7.2723 40 1 2.2451 -0.1398 -8.1178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:20 Heat of formation + Delta-G solvation = -142.168184 kcal Electronic energy + Delta-G solvation = -21062.169366 eV Core-core repulsion = 17683.418848 eV Total energy + Delta-G solvation = -3378.750517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58524 -40.11495 -38.33776 -37.08873 -36.06637 -34.32153 -33.00496 -32.10165 -29.39546 -27.84175 -27.14340 -25.87068 -23.99820 -22.81448 -21.76217 -21.34390 -19.71222 -18.64976 -18.16065 -17.62560 -17.05597 -16.94199 -16.55890 -16.35605 -16.20996 -15.85400 -15.43743 -15.29949 -14.92474 -14.53214 -14.22825 -14.11263 -13.83903 -13.64260 -13.25817 -13.18570 -12.86736 -12.65088 -12.17938 -12.12404 -12.02248 -11.92748 -11.75372 -11.69850 -11.61166 -10.97947 -10.90026 -10.32407 -10.17332 -9.29803 -8.02266 -5.36614 1.38136 1.40470 1.43658 1.50915 1.68218 2.49665 2.62946 2.87332 3.28961 3.40695 3.53916 3.60818 3.83304 3.93421 3.96033 4.02056 4.11230 4.13750 4.24541 4.47121 4.52149 4.54205 4.68488 4.76822 4.77877 4.79881 4.93633 5.03239 5.10551 5.24494 5.33932 5.46893 5.75828 5.84110 5.87169 6.21300 6.43630 7.08483 7.10245 7.83224 8.04257 9.19423 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.003095 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.790708 B = 9043.868446 C = 9493.826655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.238 4.238 7 H 0.052 0.948 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.244 1.244 13 H -0.297 1.297 14 C 0.136 3.864 15 N -0.704 5.704 16 C 0.519 3.481 17 O -0.569 6.569 18 C 0.041 3.959 19 H 0.118 0.882 20 C 0.041 3.959 21 O -0.384 6.384 22 C 0.017 3.983 23 C 0.018 3.982 24 O -0.386 6.386 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.369 0.631 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 6.712 -30.084 31.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.109 0.891 4 C 0.031 3.969 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.637 5.637 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.168 1.168 13 H -0.224 1.224 14 C 0.012 3.988 15 N -0.358 5.358 16 C 0.305 3.695 17 O -0.447 6.447 18 C -0.020 4.020 19 H 0.135 0.865 20 C -0.037 4.037 21 O -0.302 6.302 22 C -0.059 4.059 23 C -0.058 4.058 24 O -0.305 6.305 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.779 5.816 -30.040 31.139 hybrid contribution -0.305 0.727 0.764 1.098 sum -6.084 6.543 -29.276 30.609 Atomic orbital electron populations 1.21833 0.93456 1.02432 1.02327 1.21401 0.97513 1.00551 0.92213 0.89063 1.20710 0.96969 0.94231 0.84965 1.42614 1.67623 1.27900 1.01842 1.19031 1.28043 1.05736 0.84085 0.93003 1.25603 1.02689 1.03103 0.94514 1.69907 1.53423 1.42350 0.98005 0.85342 0.78789 0.79446 0.77789 1.20294 1.16786 1.22425 1.21178 0.99804 0.95162 0.82629 1.45745 1.57357 1.28333 1.04414 1.20400 0.79147 0.85131 0.84854 1.90733 1.40845 1.26079 1.87021 1.22643 0.96161 0.97826 0.85384 0.86478 1.23208 0.91341 0.99816 0.89322 1.88110 1.71612 1.55960 1.14535 1.23499 0.92992 0.99924 0.89507 1.23601 0.95876 0.99730 0.86554 1.88195 1.71743 1.56183 1.14412 0.89806 0.92809 0.93402 0.95871 0.95797 0.79697 0.93317 0.92032 0.91610 0.74365 0.92269 0.84438 0.84796 0.92087 0.90612 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.94 71.98 0.64 -2.51 16 2 C -0.10 -2.41 2.46 -10.79 -0.03 -2.44 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.16 5.72 5.65 86.38 0.49 6.21 16 5 N -0.75 -34.04 5.13 -343.47 -1.76 -35.80 16 6 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 7 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 8 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 9 N -0.99 -63.52 13.97 21.65 0.30 -63.22 16 10 Si 0.96 44.28 27.74 68.60 1.90 46.18 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.77 6.52 99.48 0.65 -9.12 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 C 0.14 3.15 5.06 86.38 0.44 3.59 16 15 N -0.70 -12.50 5.25 -463.06 -2.43 -14.93 16 16 C 0.52 11.86 7.18 87.66 0.63 12.48 16 17 O -0.57 -19.16 16.51 15.90 0.26 -18.90 16 18 C 0.04 0.69 3.25 29.90 0.10 0.79 16 19 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 20 C 0.04 0.54 6.30 72.03 0.45 0.99 16 21 O -0.38 -5.47 10.84 -136.00 -1.47 -6.94 16 22 C 0.02 0.18 7.05 72.03 0.51 0.69 16 23 C 0.02 0.22 7.05 72.03 0.51 0.73 16 24 O -0.39 -8.17 10.03 -122.90 -1.23 -9.41 16 25 H 0.08 1.20 7.18 -2.39 -0.02 1.18 16 26 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.25 7.18 -2.39 -0.02 1.23 16 28 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.37 15.41 4.71 -92.71 -0.44 14.98 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.42 4.44 7.57 -92.70 -0.70 3.74 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -79.43 327.91 0.49 -78.93 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.16 Total: 19.81 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 5.09 Total: 4.28 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.89 Total: -113.95 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.45 Total: -35.25 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Total: -79.43 0.49 -78.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.236 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds