Wall clock time and date at job start Mon Mar 30 2020 19:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31482 * 119.81401 * 2 1 4 4 C 1.32742 * 121.73365 * 180.27158 * 3 2 1 5 5 N 1.38370 * 119.43605 * 179.74912 * 4 3 2 6 6 C 1.48620 * 111.00042 * 239.60236 * 5 4 3 7 7 C 1.54965 * 103.44257 * 200.78308 * 6 5 4 8 8 H 1.09000 * 110.71676 * 278.59619 * 7 6 5 9 9 C 1.52998 * 110.72096 * 155.50763 * 7 6 5 10 10 C 1.54686 * 102.94508 * 37.13982 * 7 6 5 11 11 C 1.47716 * 111.16019 * 122.33697 * 5 4 3 12 12 C 1.52643 * 120.83488 * 289.73435 * 11 5 4 13 13 C 1.52659 * 120.65558 * 1.10916 * 11 5 4 14 14 C 1.39708 * 121.13505 * 359.46997 * 4 3 2 15 15 C 1.36562 * 119.49322 * 0.25178 * 14 4 3 16 16 C 1.40749 * 119.81783 * 179.74371 * 2 1 3 17 17 C 1.41208 * 120.57089 * 359.97438 * 16 2 1 18 18 H 1.07997 * 119.99639 * 334.77802 * 17 16 2 19 19 C 1.39871 * 120.00010 * 154.77738 * 17 16 2 20 20 N 1.30904 * 120.00106 * 343.68571 * 19 17 16 21 21 Si 1.86799 * 119.99928 * 163.68992 * 19 17 16 22 22 H 1.48501 * 109.47279 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47150 * 119.99425 * 21 19 17 24 24 H 1.48494 * 109.47220 * 239.99856 * 21 19 17 25 25 H 1.09005 * 109.47248 * 270.25471 * 1 2 3 26 26 H 1.08999 * 109.47486 * 30.25432 * 1 2 3 27 27 H 1.09004 * 109.47245 * 150.25831 * 1 2 3 28 28 H 1.08993 * 110.65908 * 82.24437 * 6 5 4 29 29 H 1.09005 * 110.65111 * 319.31121 * 6 5 4 30 30 H 1.08993 * 109.47492 * 61.44919 * 9 7 6 31 31 H 1.08995 * 109.46938 * 181.45268 * 9 7 6 32 32 H 1.09003 * 109.46596 * 301.44598 * 9 7 6 33 33 H 1.08999 * 110.33835 * 96.93459 * 10 7 6 34 34 H 1.08999 * 110.34060 * 219.19028 * 10 7 6 35 35 H 1.09006 * 117.50926 * 217.47922 * 12 11 5 36 36 H 1.09007 * 117.51055 * 2.55212 * 12 11 5 37 37 H 1.09000 * 117.50587 * 357.15032 * 13 11 5 38 38 H 1.08998 * 117.51183 * 142.23347 * 13 11 5 39 39 H 1.08002 * 120.25500 * 180.23804 * 14 4 3 40 40 H 1.08001 * 120.79866 * 180.02562 * 15 14 4 41 41 H 0.96995 * 119.99979 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1853 -0.0054 5 7 4.1266 2.4124 -0.0104 6 6 4.9906 2.5580 -1.2109 7 6 5.9931 3.6664 -0.8010 8 1 5.5493 4.6539 -0.9280 9 6 7.2884 3.5496 -1.6067 10 6 6.2497 3.3658 0.6945 11 6 5.0311 2.5473 1.1497 12 6 4.4740 2.6964 2.5630 13 6 5.1874 1.4061 2.1516 14 6 4.2494 0.0143 -0.0002 15 6 3.6199 -1.1975 0.0053 16 6 2.2069 -1.2211 0.0055 17 6 1.5091 -2.4488 0.0115 18 1 0.5069 -2.4982 0.4107 19 6 2.1161 -3.6007 -0.4995 20 7 3.1754 -3.4991 -1.2619 21 14 1.4150 -5.2840 -0.0942 22 1 0.2247 -5.1272 0.7798 23 1 1.0204 -5.9714 -1.3500 24 1 2.4427 -6.0917 0.6104 25 1 -0.3634 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8923 -0.5098 28 1 4.4017 2.8718 -2.0727 29 1 5.5140 1.6257 -1.4232 30 1 7.0697 3.6770 -2.6668 31 1 7.9874 4.3214 -1.2846 32 1 7.7311 2.5671 -1.4424 33 1 7.1631 2.7828 0.8125 34 1 6.3158 4.2942 1.2617 35 1 4.9991 3.3671 3.2431 36 1 3.3914 2.6564 2.6843 37 1 4.5742 0.5175 2.0021 38 1 6.1818 1.2282 2.5610 39 1 5.3282 0.0671 -0.0008 40 1 4.1882 -2.1159 0.0098 41 1 3.5965 -4.2979 -1.6159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156426310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:05 Heat of formation + Delta-G solvation = 58.985551 kcal Electronic energy + Delta-G solvation = -21319.754517 eV Core-core repulsion = 18392.868695 eV Total energy + Delta-G solvation = -2926.885823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09324 -37.87885 -34.67411 -34.26278 -32.77919 -31.03439 -29.97349 -27.35504 -26.94401 -25.37585 -24.00862 -22.05927 -21.27811 -20.48426 -20.00991 -18.68935 -17.36182 -15.94209 -15.72890 -15.35886 -14.70989 -14.56117 -13.97058 -13.65805 -12.89222 -12.85262 -12.77648 -12.59231 -12.43044 -12.25300 -11.70375 -11.63822 -11.56260 -11.32163 -11.23304 -11.17862 -10.89180 -10.82339 -10.70973 -10.52840 -10.44342 -9.89053 -9.86253 -9.74709 -9.40987 -8.38374 -8.17391 -7.42491 -7.35473 -6.88320 -4.51625 2.48363 2.91343 2.98247 3.03289 3.10723 3.79257 4.09804 4.44593 4.51735 4.77405 4.98155 5.08847 5.37490 5.40757 5.49424 5.52692 5.73934 5.78882 5.82419 5.99038 6.04046 6.06197 6.08753 6.15250 6.21144 6.35293 6.39744 6.42638 6.49373 6.53211 6.62000 6.67583 6.70926 6.80525 6.90664 7.13182 7.27774 7.38852 7.50904 7.76233 7.86169 8.20754 8.43303 8.61692 8.71957 9.73643 9.98094 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.005228 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.459306 B = 5354.444611 C = 5624.365524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.004 3.996 3 N -0.438 5.438 4 C 0.140 3.860 5 N -0.423 5.423 6 C 0.055 3.945 7 C -0.096 4.096 8 H 0.081 0.919 9 C -0.142 4.142 10 C -0.083 4.083 11 C 0.042 3.958 12 C -0.159 4.159 13 C -0.202 4.202 14 C -0.156 4.156 15 C -0.133 4.133 16 C 0.071 3.929 17 C -0.441 4.441 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.271 1.271 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 5.999 1.866 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 N -0.147 5.147 4 C -0.090 4.090 5 N -0.142 5.142 6 C -0.073 4.073 7 C -0.115 4.115 8 H 0.099 0.901 9 C -0.199 4.199 10 C -0.121 4.121 11 C -0.049 4.049 12 C -0.197 4.197 13 C -0.241 4.241 14 C -0.180 4.180 15 C -0.159 4.159 16 C 0.066 3.934 17 C -0.470 4.470 18 H 0.105 0.895 19 C -0.146 4.146 20 N -0.412 5.412 21 Si 0.735 3.265 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.196 1.196 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.142 0.858 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.212 7.033 1.700 8.917 hybrid contribution 0.918 -2.361 0.110 2.536 sum 6.130 4.672 1.811 7.917 Atomic orbital electron populations 1.20228 0.91059 1.01123 1.00232 1.20895 0.95037 0.87586 1.10434 1.66402 1.08464 1.30409 1.09452 1.18542 0.89126 0.86884 1.14420 1.60687 1.23087 1.30605 0.99848 1.23269 0.93357 0.97222 0.93433 1.22053 0.95454 0.99587 0.94377 0.90065 1.21770 0.96629 1.01620 0.99910 1.21877 0.95561 0.98953 0.95742 1.22137 0.93921 1.00544 0.88279 1.22928 1.00777 0.99810 0.96217 1.23690 1.01789 0.94410 1.04219 1.21641 0.98557 0.94621 1.03132 1.21269 0.94798 0.96389 1.03424 1.18373 0.92354 0.93253 0.89392 1.19624 1.01676 0.91841 1.33849 0.89506 1.26018 0.94218 1.01842 0.92499 1.69839 1.17513 1.31942 1.21859 0.86195 0.80186 0.80683 0.79401 1.18099 1.19778 1.19603 0.93493 0.93232 0.91535 0.90538 0.93378 0.92514 0.92713 0.92652 0.91393 0.91219 0.89282 0.88777 0.87051 0.89609 0.88712 0.85811 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 9.58 36.01 0.34 -1.13 16 2 C 0.00 0.10 6.86 -81.79 -0.56 -0.46 16 3 N -0.44 -11.12 10.30 -8.05 -0.08 -11.20 16 4 C 0.14 3.29 5.17 -155.12 -0.80 2.49 16 5 N -0.42 -8.65 5.35 -155.15 -0.83 -9.48 16 6 C 0.05 0.96 5.85 -1.83 -0.01 0.95 16 7 C -0.10 -1.31 3.66 -88.70 -0.32 -1.63 16 8 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 9 C -0.14 -1.57 9.16 37.16 0.34 -1.23 16 10 C -0.08 -1.16 6.23 -25.49 -0.16 -1.31 16 11 C 0.04 0.73 2.46 -131.15 -0.32 0.40 16 12 C -0.16 -2.67 10.30 -26.88 -0.28 -2.95 16 13 C -0.20 -3.56 8.51 -26.87 -0.23 -3.78 16 14 C -0.16 -3.65 5.73 -39.64 -0.23 -3.88 16 15 C -0.13 -3.38 8.73 -39.01 -0.34 -3.72 16 16 C 0.07 1.84 5.58 -106.65 -0.59 1.25 16 17 C -0.44 -11.06 8.14 -37.84 -0.31 -11.36 16 18 H 0.09 2.07 6.86 -52.49 -0.36 1.71 16 19 C 0.07 1.74 5.19 -17.34 -0.09 1.65 16 20 N -0.79 -19.43 10.95 55.54 0.61 -18.82 16 21 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.38 6.76 -51.93 -0.35 1.03 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.11 2.32 5.32 -51.93 -0.28 2.05 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 2.05 6.85 -52.49 -0.36 1.69 16 40 H 0.12 3.20 6.26 -52.49 -0.33 2.87 16 41 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -27.63 322.99 -10.24 -37.87 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.21 Total: 8.79 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -3.56 Total: -24.72 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.31 Total: -39.50 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.63 -10.24 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156426310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.857 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds