Wall clock time and date at job start Mon Mar 30 2020 19:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46705 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46691 * 299.99728 * 3 2 1 6 6 H 1.48494 * 109.47200 * 60.00080 * 3 2 1 7 7 C 1.37875 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99375 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47136 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47017 * 179.97438 * 11 10 9 13 13 C 1.39701 * 120.00200 * 179.97438 * 12 11 10 14 14 C 1.39043 * 119.99957 * 0.25541 * 13 12 11 15 15 C 1.38203 * 120.23113 * 180.25747 * 14 13 12 16 16 C 1.38021 * 120.23303 * 359.48326 * 15 14 13 17 17 C 1.39631 * 119.99644 * 0.26088 * 16 15 14 18 18 C 1.47643 * 120.11496 * 180.02562 * 17 16 15 19 19 N 1.28690 * 124.49334 * 179.69958 * 18 17 16 20 20 C 1.46740 * 112.32601 * 179.97438 * 19 18 17 21 21 C 1.54644 * 105.20429 * 344.04251 * 20 19 18 22 22 C 1.51263 * 124.48693 * 359.97438 * 18 17 16 23 23 C 1.38625 * 120.00756 * 179.97438 * 13 12 11 24 24 H 0.97001 * 119.99648 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47493 * 59.99800 * 9 7 2 26 26 H 1.09004 * 109.47313 * 300.00041 * 9 7 2 27 27 H 1.08996 * 109.47678 * 59.99745 * 10 9 7 28 28 H 1.08998 * 109.46772 * 299.99717 * 10 9 7 29 29 H 1.08996 * 109.47235 * 59.99241 * 11 10 9 30 30 H 1.08998 * 109.46869 * 299.99425 * 11 10 9 31 31 H 0.97000 * 120.00290 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.88365 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.88523 * 179.76928 * 15 14 13 34 34 H 1.07996 * 119.99995 * 180.23547 * 16 15 14 35 35 H 1.09001 * 110.44191 * 225.02260 * 20 19 18 36 36 H 1.09005 * 110.20495 * 102.93420 * 20 19 18 37 37 H 1.09003 * 111.11373 * 266.11075 * 21 20 19 38 38 H 1.08991 * 111.15706 * 141.98703 * 21 20 19 39 39 H 1.08995 * 110.55206 * 314.59635 * 22 18 17 40 40 H 1.09003 * 110.54815 * 77.27062 * 22 18 17 41 41 H 1.08008 * 120.11158 * 0.02579 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1005 0.0018 13 6 1.9667 -7.4177 0.0019 14 6 0.5997 -7.6718 -0.0039 15 6 0.1338 -8.9729 0.0015 16 6 1.0222 -10.0292 0.0020 17 6 2.3970 -9.7851 0.0026 18 6 3.3497 -10.9130 0.0026 19 7 4.6302 -10.7854 -0.0025 20 6 5.3195 -12.0808 -0.0005 21 6 4.2449 -13.1114 0.4174 22 6 2.9498 -12.3718 0.0026 23 6 2.8674 -8.4714 0.0020 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8726 -3.6046 -0.8877 29 1 0.8545 -5.0449 -0.8894 30 1 0.8527 -5.0447 0.8905 31 1 3.3859 -5.9233 0.0029 32 1 -0.1005 -6.8496 -0.0081 33 1 -0.9292 -9.1639 0.0007 34 1 0.6540 -11.0445 0.0025 35 1 6.1383 -12.0752 0.7191 36 1 5.6949 -12.3092 -0.9980 37 1 4.2684 -13.2892 1.4925 38 1 4.3585 -14.0441 -0.1350 39 1 2.1576 -12.5514 0.7293 40 1 2.6317 -12.6814 -0.9930 41 1 3.9297 -8.2762 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168437005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:30 Heat of formation + Delta-G solvation = 26.006373 kcal Electronic energy + Delta-G solvation = -19186.343151 eV Core-core repulsion = 16258.027244 eV Total energy + Delta-G solvation = -2928.315907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93375 -38.73152 -35.99768 -33.61464 -31.87507 -31.65124 -30.19776 -29.17547 -27.77416 -26.16618 -23.61947 -22.67459 -21.98150 -21.19655 -20.26077 -18.76774 -16.91774 -16.45665 -16.25047 -15.85653 -15.34358 -15.21415 -14.80828 -14.48756 -13.95216 -13.57406 -13.34978 -13.31489 -13.11386 -12.57617 -12.33577 -12.17754 -11.82482 -11.74982 -11.70045 -11.35927 -11.05032 -10.95898 -10.64785 -10.55023 -10.35284 -9.93909 -9.80935 -9.61692 -9.48325 -9.12959 -8.55129 -8.39143 -7.21770 -6.03981 -4.06529 0.87455 1.67803 2.46832 3.29177 3.36747 3.40733 3.66505 3.91703 4.02250 4.14888 4.40570 4.43671 4.54993 4.92966 5.02715 5.24152 5.29327 5.30523 5.32196 5.37188 5.46464 5.48808 5.57527 5.66233 5.68442 5.73541 5.74194 5.95125 6.10494 6.16513 6.39848 6.52198 6.58705 6.59982 6.65061 6.92710 6.97433 7.44766 7.56542 7.61179 7.73584 7.94913 7.97273 8.37104 9.00250 9.57911 11.07392 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.002557 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.547709 B =10947.653081 C =11600.419707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.121 3.879 12 N -0.743 5.743 13 C 0.218 3.782 14 C -0.183 4.183 15 C -0.076 4.076 16 C -0.160 4.160 17 C -0.012 4.012 18 C 0.193 3.807 19 N -0.498 5.498 20 C 0.014 3.986 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.158 4.158 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -25.786 0.071 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.370 5.370 13 C 0.113 3.887 14 C -0.207 4.207 15 C -0.095 4.095 16 C -0.182 4.182 17 C -0.013 4.013 18 C 0.003 3.997 19 N -0.205 5.205 20 C -0.115 4.115 21 C -0.191 4.191 22 C -0.176 4.176 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.307 -24.883 0.063 25.253 hybrid contribution 0.385 0.255 -0.002 0.461 sum 4.691 -24.628 0.061 25.071 Atomic orbital electron populations 1.69973 1.06046 1.26575 1.50791 1.25031 0.94875 0.99329 0.95269 0.86525 0.80095 0.83716 0.77608 1.19750 1.20976 1.20981 1.21248 0.93070 0.90952 1.50661 0.92615 1.19030 0.93843 0.90971 0.97501 1.21850 0.99771 0.93287 1.00948 1.21617 0.92186 0.85818 1.00646 1.45050 1.09096 1.02120 1.80725 1.17837 0.92734 0.85064 0.93102 1.20880 0.93735 0.97590 1.08475 1.20764 0.99247 0.91821 0.97664 1.20851 0.91550 0.98950 1.06888 1.17841 0.91493 0.90252 1.01717 1.23457 0.91474 0.93070 0.91660 1.73189 1.07790 1.26557 1.12989 1.23292 0.98354 0.87654 1.02244 1.23041 0.94604 0.99216 1.02206 1.22292 0.99430 0.92553 1.03323 1.20720 0.99340 0.90581 1.07654 0.92996 0.96336 0.96344 0.92761 0.92770 0.92514 0.92512 0.76690 0.85653 0.85907 0.86305 0.89347 0.89713 0.90549 0.89991 0.89377 0.89137 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.58 9.11 -34.45 -0.31 -14.90 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.12 2.00 4.91 -4.04 -0.02 1.98 16 12 N -0.74 -10.97 5.73 -58.67 -0.34 -11.30 16 13 C 0.22 3.11 6.65 -83.83 -0.56 2.55 16 14 C -0.18 -2.43 9.31 -39.30 -0.37 -2.80 16 15 C -0.08 -0.85 10.02 -39.67 -0.40 -1.25 16 16 C -0.16 -1.71 9.57 -39.14 -0.37 -2.09 16 17 C -0.01 -0.14 5.87 -105.05 -0.62 -0.76 16 18 C 0.19 2.17 7.02 -79.79 -0.56 1.61 16 19 N -0.50 -6.12 10.92 -53.76 -0.59 -6.71 16 20 C 0.01 0.13 7.81 -3.05 -0.02 0.10 16 21 C -0.15 -1.06 7.26 -24.92 -0.18 -1.24 16 22 C -0.14 -1.07 5.99 -26.66 -0.16 -1.23 16 23 C -0.16 -2.16 9.51 -38.95 -0.37 -2.53 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 30 H 0.06 0.95 7.95 -51.93 -0.41 0.53 16 31 H 0.40 5.48 8.48 -40.82 -0.35 5.13 16 32 H 0.13 1.65 6.71 -52.49 -0.35 1.29 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.12 0.96 7.17 -52.49 -0.38 0.58 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.13 1.77 7.77 -52.48 -0.41 1.36 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -30.71 340.73 -10.87 -41.58 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.48 Total: 1.76 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -4.32 Total: -21.08 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.19 Total: -43.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.71 -10.87 -41.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.587 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds