Wall clock time and date at job start Mon Mar 30 2020 19:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47177 * 2 1 4 4 C 1.46894 * 111.00060 * 296.36517 * 3 2 1 5 5 C 1.52995 * 109.47368 * 293.95481 * 4 3 2 6 6 C 1.50698 * 109.47575 * 179.97438 * 5 4 3 7 7 H 1.08008 * 119.99585 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00516 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00356 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99650 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47385 * 89.99803 * 10 8 6 12 12 H 1.48503 * 109.47281 * 209.99604 * 10 8 6 13 13 H 1.48507 * 109.47273 * 329.99707 * 10 8 6 14 14 C 1.46910 * 110.99810 * 60.31927 * 3 2 1 15 15 H 1.08994 * 109.46631 * 295.38798 * 14 3 2 16 16 C 1.53000 * 109.46549 * 175.38885 * 14 3 2 17 17 C 1.50702 * 109.47050 * 55.38831 * 14 3 2 18 18 C 1.38367 * 119.84493 * 47.10925 * 17 14 3 19 19 C 1.37953 * 120.14718 * 179.76392 * 18 17 14 20 20 C 1.39637 * 119.84398 * 0.50632 * 19 18 17 21 21 C 1.43199 * 120.14697 * 179.76570 * 20 19 18 22 22 N 7.19421 * 105.30701 * 100.95080 * 2 1 3 23 23 C 1.39627 * 119.69913 * 359.74850 * 20 19 18 24 24 C 1.37942 * 119.84920 * 359.97438 * 23 20 19 25 25 H 1.08997 * 109.47271 * 303.22673 * 1 2 3 26 26 H 1.09000 * 109.47091 * 183.22799 * 1 2 3 27 27 H 1.09003 * 109.47010 * 63.22383 * 1 2 3 28 28 H 1.09002 * 109.46642 * 119.99473 * 2 1 3 29 29 H 1.09001 * 109.47538 * 239.99813 * 2 1 3 30 30 H 1.09007 * 109.46864 * 53.95343 * 4 3 2 31 31 H 1.08997 * 109.47030 * 173.95367 * 4 3 2 32 32 H 1.09007 * 109.47016 * 299.99769 * 5 4 3 33 33 H 1.09006 * 109.47312 * 59.99818 * 5 4 3 34 34 H 0.97001 * 119.99801 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46784 * 180.02562 * 16 14 3 36 36 H 1.08996 * 109.47079 * 299.99435 * 16 14 3 37 37 H 1.09000 * 109.47408 * 60.00337 * 16 14 3 38 38 H 1.07996 * 119.92436 * 0.02562 * 18 17 14 39 39 H 1.07996 * 120.07303 * 180.22610 * 19 18 17 40 40 H 1.08004 * 120.07773 * 179.97438 * 23 20 19 41 41 H 1.08005 * 119.92821 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6210 2.0843 -1.2287 5 6 2.3259 1.4490 -2.4288 6 6 1.9164 2.1661 -3.6894 7 1 1.2230 2.9926 -3.6396 8 6 2.4278 1.7677 -4.9063 9 7 2.0708 2.3938 -6.0064 10 14 3.6276 0.3386 -4.9924 11 1 2.8756 -0.9290 -5.1738 12 1 4.5502 0.5352 -6.1394 13 1 4.4111 0.2734 -3.7325 14 6 1.5548 2.1077 1.1916 15 1 0.4686 2.1935 1.1637 16 6 2.1765 3.5055 1.2149 17 6 1.9676 1.3535 2.4293 18 6 3.2648 0.8877 2.5513 19 6 3.6506 0.2009 3.6838 20 6 2.7258 -0.0331 4.7035 21 6 3.1180 -0.7497 5.8796 22 7 3.4292 -1.3182 6.8126 23 6 1.4171 0.4352 4.5713 24 6 1.0463 1.1256 3.4361 25 1 -0.3633 0.5631 0.8596 26 1 -0.3633 -1.0260 0.0579 27 1 -0.3633 0.4630 -0.9175 28 1 1.8932 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 0.5414 2.0053 -1.3578 31 1 1.9023 3.1349 -1.1564 32 1 3.4054 1.5281 -2.2997 33 1 2.0446 0.3984 -2.5011 34 1 2.4303 2.1132 -6.8625 35 1 1.8320 4.0416 2.0993 36 1 3.2627 3.4196 1.2428 37 1 1.8780 4.0510 0.3197 38 1 3.9779 1.0660 1.7601 39 1 4.6644 -0.1590 3.7793 40 1 0.6967 0.2574 5.3561 41 1 0.0344 1.4888 3.3327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060477421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:15 Heat of formation + Delta-G solvation = 53.080251 kcal Electronic energy + Delta-G solvation = -20450.963013 eV Core-core repulsion = 17523.821117 eV Total energy + Delta-G solvation = -2927.141896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16630 -38.10899 -36.50546 -33.54890 -32.56264 -31.30729 -30.95316 -29.96246 -27.80467 -25.27250 -23.98400 -22.98058 -22.62027 -20.70086 -19.11080 -18.91236 -16.91113 -16.16026 -15.98804 -15.12881 -15.00186 -14.75569 -14.24001 -14.11136 -13.87999 -13.62268 -13.55801 -12.95032 -12.80973 -12.70209 -12.62966 -12.46596 -12.21303 -12.11829 -11.61656 -11.58884 -11.24708 -11.15898 -11.13563 -10.74714 -10.52436 -9.92519 -9.82265 -9.71102 -9.21730 -9.20303 -8.87863 -8.53920 -7.87301 -6.05906 -4.04041 0.56185 1.15710 2.43955 2.74355 3.30580 3.38723 3.43566 3.65882 3.67669 4.21069 4.44782 4.59489 4.65564 4.69854 5.16436 5.20261 5.27766 5.30320 5.32658 5.38853 5.54319 5.57664 5.66001 5.74253 5.79882 5.86365 6.03846 6.06054 6.08562 6.15295 6.16953 6.29526 6.38209 6.44713 6.55149 6.63687 6.79171 7.14436 7.25197 7.28580 7.56284 7.59825 7.83140 8.51243 8.98328 9.56849 11.07469 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.003920 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.569963 B = 7140.298407 C = 7460.539183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.063 3.937 5 C -0.005 4.005 6 C -0.521 4.521 7 H 0.070 0.930 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.109 3.891 15 H 0.052 0.948 16 C -0.144 4.144 17 C -0.034 4.034 18 C -0.094 4.094 19 C -0.073 4.073 20 C -0.043 4.043 21 C 0.260 3.740 22 N -0.429 5.429 23 C -0.071 4.071 24 C -0.120 4.120 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -2.228 18.729 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.082 4.082 3 N -0.254 5.254 4 C -0.063 4.063 5 C -0.043 4.043 6 C -0.559 4.559 7 H 0.088 0.912 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.001 3.999 15 H 0.070 0.930 16 C -0.201 4.201 17 C -0.035 4.035 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.046 4.046 21 C -0.055 4.055 22 N -0.104 5.104 23 C -0.092 4.092 24 C -0.139 4.139 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.238 -3.107 19.993 20.234 hybrid contribution -0.496 -0.561 -0.642 0.986 sum -0.734 -3.667 19.351 19.709 Atomic orbital electron populations 1.22398 0.98664 1.01791 1.02137 1.22190 0.92779 0.90696 1.02558 1.62439 1.59155 1.02010 1.01834 1.22254 0.97889 0.98141 0.88020 1.19550 0.96473 0.95735 0.92552 1.21078 1.27662 1.17370 0.89810 0.91197 1.24991 0.96194 0.96526 0.95634 1.69912 1.44720 1.41408 0.98283 0.86786 0.81675 0.82952 0.77958 1.20431 1.21493 1.18694 1.20653 0.97688 0.93505 0.88086 0.92999 1.21908 1.01935 0.94327 1.01973 1.20188 0.93588 0.94876 0.94861 1.21104 0.96468 0.96582 0.97029 1.21222 0.98824 0.97041 0.92217 1.15995 0.95323 1.02857 0.90430 1.25821 0.93483 0.93232 0.92975 1.81246 1.07999 1.10065 1.11113 1.21061 0.93974 0.96228 0.97905 1.20989 0.99862 0.99640 0.93374 0.93040 0.92693 0.91663 0.91430 0.90001 0.95015 0.90975 0.95796 0.97090 0.92746 0.92563 0.91505 0.91246 0.83834 0.85164 0.85315 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 9.24 37.16 0.34 -2.12 16 2 C 0.05 0.64 5.47 -3.82 -0.02 0.61 16 3 N -0.53 -7.72 4.12 -228.04 -0.94 -8.66 16 4 C 0.06 1.15 4.53 -3.83 -0.02 1.13 16 5 C -0.01 -0.12 3.97 -27.89 -0.11 -0.23 16 6 C -0.52 -14.29 9.66 -34.44 -0.33 -14.62 16 7 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 10 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 14 C 0.11 1.27 1.75 -68.86 -0.12 1.15 16 15 H 0.05 0.60 6.27 -51.93 -0.33 0.28 16 16 C -0.14 -1.60 8.93 37.16 0.33 -1.27 16 17 C -0.03 -0.34 3.56 -104.53 -0.37 -0.71 16 18 C -0.09 -0.91 8.32 -39.64 -0.33 -1.24 16 19 C -0.07 -0.64 9.76 -39.16 -0.38 -1.02 16 20 C -0.04 -0.38 5.73 -106.93 -0.61 -1.00 16 21 C 0.26 2.77 15.33 -22.47 -0.34 2.43 16 22 N -0.43 -5.52 18.54 41.84 0.78 -4.74 16 23 C -0.07 -0.57 9.76 -39.17 -0.38 -0.95 16 24 C -0.12 -1.01 9.65 -39.65 -0.38 -1.39 16 25 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.97 6.52 -51.93 -0.34 0.63 16 28 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 29 H 0.08 1.29 6.31 -51.93 -0.33 0.96 16 30 H 0.03 0.59 6.19 -51.92 -0.32 0.27 16 31 H 0.07 1.31 5.85 -51.93 -0.30 1.00 16 32 H 0.02 0.56 7.20 -51.92 -0.37 0.18 16 33 H 0.01 0.25 5.91 -51.93 -0.31 -0.06 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 37 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 38 H 0.14 1.49 7.93 -52.49 -0.42 1.07 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 0.90 7.98 -52.48 -0.42 0.48 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.23 331.78 -7.70 -37.93 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.81 Total: -2.11 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.83 Total: -17.41 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.61 Total: -40.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.23 -7.70 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060477421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.008 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds