Wall clock time and date at job start Mon Mar 30 2020 19:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46892 * 109.47009 * 2 1 4 4 C 1.46901 * 111.00065 * 294.51058 * 3 2 1 5 5 C 1.50703 * 109.46984 * 295.71710 * 4 3 2 6 6 H 1.08001 * 120.00137 * 3.87291 * 5 4 3 7 7 C 1.37873 * 120.00094 * 183.87070 * 5 4 3 8 8 N 1.31516 * 120.00027 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00054 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46980 * 89.99611 * 9 7 5 11 11 H 1.48492 * 109.47457 * 209.99660 * 9 7 5 12 12 H 1.48498 * 109.46929 * 330.00501 * 9 7 5 13 13 C 1.46898 * 111.00227 * 58.46653 * 3 2 1 14 14 H 1.09005 * 109.46972 * 294.74779 * 13 3 2 15 15 C 1.53001 * 109.47327 * 174.75224 * 13 3 2 16 16 C 1.52997 * 109.47570 * 54.74903 * 13 3 2 17 17 C 1.50694 * 109.47661 * 185.09557 * 16 13 3 18 18 C 1.38366 * 119.84506 * 84.52983 * 17 16 13 19 19 C 1.37950 * 120.14721 * 179.70319 * 18 17 16 20 20 C 1.39623 * 119.84984 * 0.27858 * 19 18 17 21 21 C 1.43201 * 120.15379 * 180.02562 * 20 19 18 22 22 N 9.36620 * 74.80804 * 60.38922 * 2 1 3 23 23 C 1.39632 * 119.69973 * 0.02562 * 20 19 18 24 24 C 1.37941 * 119.84564 * 359.97438 * 23 20 19 25 25 H 1.08996 * 109.47343 * 61.14269 * 1 2 3 26 26 H 1.09002 * 109.47075 * 181.14473 * 1 2 3 27 27 H 1.09003 * 109.47022 * 301.14040 * 1 2 3 28 28 H 1.09001 * 109.47248 * 239.99335 * 2 1 3 29 29 H 1.09000 * 109.46797 * 119.99939 * 2 1 3 30 30 H 1.08992 * 109.47249 * 55.71522 * 4 3 2 31 31 H 1.09000 * 109.47314 * 175.72231 * 4 3 2 32 32 H 0.96999 * 119.99742 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47370 * 299.99978 * 15 13 3 34 34 H 1.09007 * 109.47003 * 59.99656 * 15 13 3 35 35 H 1.09000 * 109.47324 * 179.97438 * 15 13 3 36 36 H 1.09003 * 109.46900 * 65.09423 * 16 13 3 37 37 H 1.08996 * 109.46788 * 305.10181 * 16 13 3 38 38 H 1.07996 * 119.92220 * 359.97438 * 18 17 16 39 39 H 1.08006 * 120.07007 * 180.29874 * 19 18 17 40 40 H 1.08004 * 120.08101 * 179.97438 * 23 20 19 41 41 H 1.08007 * 119.92557 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6586 2.0709 -1.2478 5 6 2.3551 1.4051 -2.4066 6 1 2.9511 0.5196 -2.2420 7 6 2.2314 1.9264 -3.6770 8 7 2.8396 1.3456 -4.6882 9 14 1.2011 3.4583 -3.9618 10 1 2.0565 4.6638 -3.8190 11 1 0.6244 3.4199 -5.3296 12 1 0.1034 3.5093 -2.9629 13 6 1.5189 2.1204 1.1689 14 1 0.4351 2.2156 1.1013 15 6 2.1519 3.5128 1.2049 16 6 1.8854 1.3604 2.4452 17 6 1.2654 2.0473 3.6346 18 6 -0.0422 1.7654 3.9882 19 6 -0.6140 2.3860 5.0795 20 6 0.1281 3.3047 5.8243 21 6 -0.4588 3.9523 6.9587 22 7 -0.9245 4.4662 7.8584 23 6 1.4451 3.5892 5.4580 24 6 2.0044 2.9614 4.3645 25 1 -0.3634 0.4960 -0.9000 26 1 -0.3633 -1.0275 0.0205 27 1 -0.3633 0.5315 0.8796 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5798 2.0173 -1.3930 31 1 1.9661 3.1151 -1.1905 32 1 2.7528 1.7126 -5.5819 33 1 3.2356 3.4177 1.2725 34 1 1.8907 4.0543 0.2956 35 1 1.7800 4.0587 2.0720 36 1 2.9693 1.3436 2.5594 37 1 1.5112 0.3387 2.3797 38 1 -0.6151 1.0546 3.4111 39 1 -1.6333 2.1614 5.3573 40 1 2.0247 4.2991 6.0295 41 1 3.0232 3.1801 4.0803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172308708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:59 Heat of formation + Delta-G solvation = 54.452516 kcal Electronic energy + Delta-G solvation = -20397.784846 eV Core-core repulsion = 17470.702456 eV Total energy + Delta-G solvation = -2927.082390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.98423 -38.13952 -36.65265 -33.76146 -32.40315 -31.38849 -30.92964 -29.39575 -26.98442 -26.54399 -23.20386 -23.04089 -22.67947 -21.03871 -19.15409 -18.57038 -16.88002 -16.15739 -15.85228 -15.18918 -14.74452 -14.67781 -14.45176 -14.24437 -13.83356 -13.65660 -13.37825 -13.08845 -12.96507 -12.51649 -12.39160 -12.25005 -12.09748 -11.91802 -11.64994 -11.47878 -11.31599 -11.10075 -10.88504 -10.68713 -10.59929 -10.22760 -9.93910 -9.83566 -9.26505 -9.21950 -8.84156 -8.56887 -7.34439 -6.06502 -4.03051 0.53987 1.10366 2.41813 2.71484 3.26374 3.34511 3.35671 3.62756 3.65160 4.40271 4.49739 4.57528 4.62099 4.96198 5.10837 5.11868 5.25856 5.30506 5.32972 5.47841 5.65109 5.69235 5.73908 5.83664 5.91897 5.97440 6.01785 6.03034 6.04671 6.11493 6.31089 6.38643 6.43428 6.55734 6.60212 6.63083 6.78838 6.95286 7.06002 7.23165 7.60431 7.90951 8.06333 8.64808 9.01833 9.55602 11.06668 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003830 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.094451 B = 7308.113307 C = 7591.261771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 N -0.521 5.521 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.083 3.917 14 H 0.036 0.964 15 C -0.148 4.148 16 C -0.087 4.087 17 C -0.034 4.034 18 C -0.120 4.120 19 C -0.067 4.067 20 C -0.046 4.046 21 C 0.260 3.740 22 N -0.428 5.428 23 C -0.068 4.068 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.059 0.941 30 H -0.010 1.010 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 0.912 17.426 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.074 4.074 3 N -0.244 5.244 4 C 0.032 3.968 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.026 4.026 14 H 0.054 0.946 15 C -0.205 4.205 16 C -0.124 4.124 17 C -0.035 4.035 18 C -0.138 4.138 19 C -0.088 4.088 20 C -0.050 4.050 21 C -0.055 4.055 22 N -0.104 5.104 23 C -0.088 4.088 24 C -0.134 4.134 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.008 0.992 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.279 1.724 18.645 19.208 hybrid contribution -1.313 0.711 -0.771 1.681 sum -5.592 2.435 17.874 18.886 Atomic orbital electron populations 1.22406 0.99561 1.01131 1.01680 1.22100 0.91899 0.91233 1.02176 1.62228 1.58491 1.01643 1.02055 1.20241 0.94332 0.94867 0.87382 1.21034 1.30281 1.13354 0.89794 0.90174 1.24885 0.95432 0.96882 0.96095 1.69890 1.43636 1.40639 0.99863 0.86914 0.81247 0.84290 0.77631 1.20147 1.21277 1.19319 1.21509 0.96845 0.93916 0.90285 0.94594 1.21945 1.01606 0.95686 1.01296 1.20920 1.01617 0.99034 0.90849 1.20307 0.93624 0.94304 0.95264 1.21045 0.95034 1.00805 0.96941 1.21136 0.99431 0.94117 0.94067 1.15967 0.94855 1.00830 0.93306 1.25805 0.93425 0.93312 0.92984 1.81247 1.08466 1.09485 1.11177 1.21158 0.92846 0.98395 0.96438 1.21097 1.00843 0.96630 0.94857 0.91904 0.93151 0.93616 0.89364 0.92301 0.99200 0.95386 0.92703 0.91805 0.92265 0.92976 0.89732 0.90026 0.85002 0.85233 0.85166 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 9.18 37.16 0.34 -2.57 16 2 C 0.05 0.92 5.35 -3.83 -0.02 0.90 16 3 N -0.52 -9.75 4.58 -228.09 -1.05 -10.79 16 4 C 0.16 3.58 3.41 -4.97 -0.02 3.56 16 5 C -0.51 -13.74 9.06 -34.44 -0.31 -14.05 16 6 H 0.08 2.37 7.10 -52.49 -0.37 1.99 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.87 20.98 27.39 -169.99 -4.66 16.32 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.21 6.66 56.52 0.38 -5.84 16 13 C 0.08 1.22 1.54 -67.71 -0.10 1.12 16 14 H 0.04 0.55 6.55 -51.93 -0.34 0.21 16 15 C -0.15 -2.10 8.66 37.16 0.32 -1.78 16 16 C -0.09 -0.98 4.54 -27.89 -0.13 -1.11 16 17 C -0.03 -0.32 4.57 -104.53 -0.48 -0.80 16 18 C -0.12 -1.06 9.70 -39.64 -0.38 -1.45 16 19 C -0.07 -0.55 9.76 -39.17 -0.38 -0.94 16 20 C -0.05 -0.41 5.73 -106.93 -0.61 -1.02 16 21 C 0.26 2.74 15.33 -22.47 -0.34 2.39 16 22 N -0.43 -5.47 18.54 41.84 0.78 -4.69 16 23 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 24 C -0.12 -0.99 8.34 -39.64 -0.33 -1.32 16 25 H 0.06 1.13 6.50 -51.93 -0.34 0.79 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.61 6.40 -51.93 -0.33 0.28 16 28 H 0.09 1.77 6.53 -51.93 -0.34 1.43 16 29 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 30 H -0.01 -0.22 5.61 -51.93 -0.29 -0.51 16 31 H 0.03 0.65 5.16 -51.93 -0.27 0.38 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.95 6.26 -51.93 -0.33 0.63 16 35 H 0.05 0.62 6.52 -51.93 -0.34 0.28 16 36 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 37 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -30.28 329.47 -7.81 -38.09 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.69 Total: -1.48 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.93 Total: -16.17 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.50 Total: -41.72 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.66 Total: 16.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.28 -7.81 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172308708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.541 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds