Wall clock time and date at job start Mon Mar 30 2020 19:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46892 * 109.47009 * 2 1 4 4 C 1.46901 * 111.00065 * 294.51058 * 3 2 1 5 5 C 1.50703 * 109.46984 * 295.71710 * 4 3 2 6 6 H 1.08001 * 120.00137 * 3.87291 * 5 4 3 7 7 C 1.37873 * 120.00094 * 183.87070 * 5 4 3 8 8 N 1.31516 * 120.00027 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00054 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46980 * 89.99611 * 9 7 5 11 11 H 1.48492 * 109.47457 * 209.99660 * 9 7 5 12 12 H 1.48498 * 109.46929 * 330.00501 * 9 7 5 13 13 C 1.46898 * 111.00227 * 58.46653 * 3 2 1 14 14 H 1.09005 * 109.46972 * 294.74779 * 13 3 2 15 15 C 1.53001 * 109.47327 * 174.75224 * 13 3 2 16 16 C 1.52997 * 109.47570 * 54.74903 * 13 3 2 17 17 C 1.50694 * 109.47661 * 185.09557 * 16 13 3 18 18 C 1.38366 * 119.84506 * 84.52983 * 17 16 13 19 19 C 1.37950 * 120.14721 * 179.70319 * 18 17 16 20 20 C 1.39623 * 119.84984 * 0.27858 * 19 18 17 21 21 C 1.43201 * 120.15379 * 180.02562 * 20 19 18 22 22 N 9.36620 * 74.80804 * 60.38922 * 2 1 3 23 23 C 1.39632 * 119.69973 * 0.02562 * 20 19 18 24 24 C 1.37941 * 119.84564 * 359.97438 * 23 20 19 25 25 H 1.08996 * 109.47343 * 61.14269 * 1 2 3 26 26 H 1.09002 * 109.47075 * 181.14473 * 1 2 3 27 27 H 1.09003 * 109.47022 * 301.14040 * 1 2 3 28 28 H 1.09001 * 109.47248 * 239.99335 * 2 1 3 29 29 H 1.09000 * 109.46797 * 119.99939 * 2 1 3 30 30 H 1.08992 * 109.47249 * 55.71522 * 4 3 2 31 31 H 1.09000 * 109.47314 * 175.72231 * 4 3 2 32 32 H 0.96999 * 119.99742 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47370 * 299.99978 * 15 13 3 34 34 H 1.09007 * 109.47003 * 59.99656 * 15 13 3 35 35 H 1.09000 * 109.47324 * 179.97438 * 15 13 3 36 36 H 1.09003 * 109.46900 * 65.09423 * 16 13 3 37 37 H 1.08996 * 109.46788 * 305.10181 * 16 13 3 38 38 H 1.07996 * 119.92220 * 359.97438 * 18 17 16 39 39 H 1.08006 * 120.07007 * 180.29874 * 19 18 17 40 40 H 1.08004 * 120.08101 * 179.97438 * 23 20 19 41 41 H 1.08007 * 119.92557 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6586 2.0709 -1.2478 5 6 2.3551 1.4051 -2.4066 6 1 2.9511 0.5196 -2.2420 7 6 2.2314 1.9264 -3.6770 8 7 2.8396 1.3456 -4.6882 9 14 1.2011 3.4583 -3.9618 10 1 2.0565 4.6638 -3.8190 11 1 0.6244 3.4199 -5.3296 12 1 0.1034 3.5093 -2.9629 13 6 1.5189 2.1204 1.1689 14 1 0.4351 2.2156 1.1013 15 6 2.1519 3.5128 1.2049 16 6 1.8854 1.3604 2.4452 17 6 1.2654 2.0473 3.6346 18 6 -0.0422 1.7654 3.9882 19 6 -0.6140 2.3860 5.0795 20 6 0.1281 3.3047 5.8243 21 6 -0.4588 3.9523 6.9587 22 7 -0.9245 4.4662 7.8584 23 6 1.4451 3.5892 5.4580 24 6 2.0044 2.9614 4.3645 25 1 -0.3634 0.4960 -0.9000 26 1 -0.3633 -1.0275 0.0205 27 1 -0.3633 0.5315 0.8796 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5798 2.0173 -1.3930 31 1 1.9661 3.1151 -1.1905 32 1 2.7528 1.7126 -5.5819 33 1 3.2356 3.4177 1.2725 34 1 1.8907 4.0543 0.2956 35 1 1.7800 4.0587 2.0720 36 1 2.9693 1.3436 2.5594 37 1 1.5112 0.3387 2.3797 38 1 -0.6151 1.0546 3.4111 39 1 -1.6333 2.1614 5.3573 40 1 2.0247 4.2991 6.0295 41 1 3.0232 3.1801 4.0803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172308708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:59 Heat of formation + Delta-G solvation = 36.831585 kcal Electronic energy + Delta-G solvation = -20398.548947 eV Core-core repulsion = 17470.702456 eV Total energy + Delta-G solvation = -2927.846491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76656 -39.36430 -37.55013 -35.10697 -34.16274 -32.17710 -31.87251 -30.91820 -28.20393 -27.91945 -24.50496 -24.11189 -23.52435 -22.37443 -19.90535 -19.83171 -18.88778 -17.26752 -16.66194 -16.54110 -16.07726 -15.84776 -15.44631 -15.18149 -15.05716 -14.71406 -14.39299 -14.33465 -13.96523 -13.80570 -13.68274 -13.40069 -13.37228 -13.06507 -12.93711 -12.62037 -12.54909 -12.36658 -12.13476 -12.02673 -11.81974 -11.76459 -11.56896 -11.23101 -11.16454 -10.70401 -9.88040 -9.60277 -8.82407 -8.23560 -6.24481 -0.16491 0.48936 1.36115 1.37008 1.47177 1.61426 1.94818 2.37098 2.89193 2.93229 3.09995 3.31832 3.92439 4.02626 4.04867 4.19760 4.22373 4.35390 4.47790 4.52057 4.57938 4.62064 4.72295 4.76682 4.86446 4.94944 4.97146 5.08465 5.12507 5.15638 5.18398 5.30703 5.35755 5.39723 5.40660 5.43756 5.56029 5.66885 5.75856 5.95244 6.10062 6.44566 6.52659 6.79020 6.83339 7.38543 8.93106 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003830 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.094451 B = 7308.113307 C = 7591.261771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.170 3.830 5 C -0.507 4.507 6 H 0.040 0.960 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.939 3.061 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.252 1.252 13 C 0.083 3.917 14 H 0.037 0.963 15 C -0.146 4.146 16 C -0.076 4.076 17 C -0.041 4.041 18 C -0.123 4.123 19 C -0.063 4.063 20 C -0.053 4.053 21 C 0.282 3.718 22 N -0.472 5.472 23 C -0.063 4.063 24 C -0.117 4.117 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.091 0.909 30 H -0.013 1.013 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 1.833 19.464 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.074 4.074 3 N -0.260 5.260 4 C 0.042 3.958 5 C -0.545 4.545 6 H 0.058 0.942 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.176 1.176 13 C -0.025 4.025 14 H 0.055 0.945 15 C -0.203 4.203 16 C -0.114 4.114 17 C -0.042 4.042 18 C -0.140 4.140 19 C -0.084 4.084 20 C -0.056 4.056 21 C -0.032 4.032 22 N -0.149 5.149 23 C -0.083 4.083 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.005 0.995 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.372 2.639 20.716 21.564 hybrid contribution -0.905 0.324 -1.352 1.659 sum -6.277 2.963 19.364 20.571 Atomic orbital electron populations 1.22312 0.97939 1.02433 1.01236 1.22073 0.93257 0.90348 1.01695 1.62114 1.59530 1.02435 1.01875 1.19944 0.93265 0.94676 0.87871 1.21321 1.29393 1.12094 0.91695 0.94211 1.25782 0.96903 1.00440 0.95833 1.70050 1.45909 1.42811 1.00456 0.85826 0.79954 0.80102 0.77761 1.19115 1.21130 1.17555 1.21618 0.96767 0.94204 0.89940 0.94537 1.21938 1.01598 0.95427 1.01354 1.20764 1.01914 0.98953 0.89736 1.20192 0.94114 0.94900 0.95002 1.21173 0.94815 1.00963 0.97099 1.21299 1.00118 0.93409 0.93528 1.16072 0.95364 1.01227 0.92981 1.26002 0.92356 0.92296 0.92573 1.81274 1.09903 1.11052 1.12630 1.21334 0.92528 0.98244 0.96191 1.21232 1.01364 0.96201 0.94723 0.94988 0.91185 0.91092 0.93515 0.89111 0.99509 0.95225 0.92666 0.91975 0.94493 0.90290 0.89625 0.89504 0.83940 0.83675 0.83477 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.26 9.18 71.98 0.66 -4.60 16 2 C 0.05 1.82 5.35 86.30 0.46 2.28 16 3 N -0.54 -19.69 4.58 -875.55 -4.01 -23.70 16 4 C 0.17 7.67 3.41 85.56 0.29 7.97 16 5 C -0.51 -28.39 9.06 25.60 0.23 -28.16 16 6 H 0.04 2.49 7.10 -2.91 -0.02 2.47 16 7 C 0.01 0.41 5.47 84.65 0.46 0.87 16 8 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 9 Si 0.94 43.50 27.39 68.60 1.88 45.38 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.25 -10.87 6.66 99.48 0.66 -10.21 16 13 C 0.08 2.24 1.54 44.92 0.07 2.31 16 14 H 0.04 1.01 6.55 -2.38 -0.02 0.99 16 15 C -0.15 -3.81 8.66 71.98 0.62 -3.19 16 16 C -0.08 -1.50 4.54 29.85 0.14 -1.36 16 17 C -0.04 -0.64 4.57 -19.81 -0.09 -0.73 16 18 C -0.12 -1.72 9.70 22.23 0.22 -1.50 16 19 C -0.06 -0.83 9.76 22.54 0.22 -0.61 16 20 C -0.05 -0.78 5.73 -21.36 -0.12 -0.91 16 21 C 0.28 5.36 15.33 88.33 1.35 6.71 16 22 N -0.47 -11.46 18.54 19.00 0.35 -11.11 16 23 C -0.06 -0.80 9.76 22.54 0.22 -0.58 16 24 C -0.12 -1.59 8.34 22.23 0.19 -1.40 16 25 H 0.03 1.12 6.50 -2.39 -0.02 1.10 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.69 6.40 -2.39 -0.02 1.68 16 28 H 0.05 1.94 6.53 -2.39 -0.02 1.93 16 29 H 0.09 2.45 6.20 -2.39 -0.01 2.43 16 30 H -0.01 -0.58 5.61 -2.39 -0.01 -0.59 16 31 H 0.03 1.34 5.16 -2.39 -0.01 1.33 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.12 6.26 -2.38 -0.01 1.10 16 35 H 0.08 1.62 6.52 -2.39 -0.02 1.60 16 36 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 37 H 0.09 1.61 6.01 -2.39 -0.01 1.60 16 38 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -67.86 329.47 4.42 -63.44 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.99 Total: 7.54 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.92 Total: -22.90 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.36 Total: -93.47 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Total: -67.86 4.42 -63.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172308708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.270 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds