Wall clock time and date at job start Mon Mar 30 2020 19:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47659 * 110.99565 * 2 1 4 4 C 1.53670 * 88.17889 * 222.21205 * 3 2 1 5 5 C 1.46577 * 110.99549 * 264.36290 * 2 1 3 6 6 C 1.53124 * 121.15754 * 11.65937 * 5 2 1 7 7 N 1.48123 * 85.89585 * 211.59311 * 6 5 2 8 8 C 1.46898 * 111.00024 * 137.03023 * 7 6 5 9 9 C 1.50698 * 109.47277 * 90.42071 * 8 7 6 10 10 C 1.37639 * 120.12433 * 259.72671 * 9 8 7 11 11 C 1.38614 * 120.24142 * 179.72346 * 10 9 8 12 12 C 1.38652 * 120.50453 * 0.55317 * 11 10 9 13 13 C 1.37605 * 120.24870 * 359.72744 * 12 11 10 14 14 C 1.40692 * 120.12915 * 80.00279 * 9 8 7 15 15 C 1.41407 * 120.24200 * 359.97438 * 14 9 8 16 16 H 1.07996 * 119.99471 * 329.82634 * 15 14 9 17 17 C 1.39942 * 119.99805 * 149.83127 * 15 14 9 18 18 N 1.30823 * 119.99718 * 162.05620 * 17 15 14 19 19 Si 1.86806 * 120.00168 * 342.05204 * 17 15 14 20 20 H 1.48501 * 109.46889 * 95.39547 * 19 17 15 21 21 H 1.48499 * 109.47216 * 215.39230 * 19 17 15 22 22 H 1.48494 * 109.47008 * 335.39617 * 19 17 15 23 23 C 1.48128 * 90.95227 * 24.05586 * 7 6 5 24 24 H 1.09001 * 109.47241 * 155.64484 * 1 2 3 25 25 H 1.09007 * 109.46849 * 275.63631 * 1 2 3 26 26 H 1.08997 * 109.47702 * 35.63720 * 1 2 3 27 27 H 1.08998 * 113.43444 * 337.04346 * 3 2 1 28 28 H 1.09001 * 113.43414 * 107.38262 * 3 2 1 29 29 H 1.08999 * 114.21418 * 271.68200 * 4 3 2 30 30 H 1.09003 * 114.39628 * 138.83992 * 4 3 2 31 31 H 1.08999 * 113.80381 * 325.84092 * 6 5 2 32 32 H 1.09004 * 113.80201 * 97.35061 * 6 5 2 33 33 H 1.09003 * 109.47385 * 210.42512 * 8 7 6 34 34 H 1.09007 * 109.47312 * 330.41980 * 8 7 6 35 35 H 1.07996 * 119.87986 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.74862 * 180.26149 * 11 10 9 37 37 H 1.07999 * 119.87994 * 179.74926 * 12 11 10 38 38 H 1.07992 * 120.12425 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99616 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.80851 * 221.69866 * 23 7 6 41 41 H 1.08996 * 113.80398 * 90.18629 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3786 0.0000 4 6 3.0427 0.9254 -1.0320 5 6 1.9942 -0.1344 -1.3618 6 6 1.0799 0.0113 -2.5815 7 7 1.9784 -0.9659 -3.2386 8 6 1.2087 -1.9660 -3.9904 9 6 1.0085 -1.4865 -5.4050 10 6 -0.1877 -0.9173 -5.7786 11 6 -0.3724 -0.4702 -7.0776 12 6 0.6386 -0.6008 -8.0174 13 6 1.8406 -1.1720 -7.6676 14 6 2.0414 -1.6243 -6.3502 15 6 3.2727 -2.2124 -5.9791 16 1 3.6321 -2.1181 -4.9650 17 6 4.0254 -2.9163 -6.9258 18 7 5.2928 -3.1556 -6.7070 19 14 3.2204 -3.5144 -8.5018 20 1 3.4561 -2.5254 -9.5842 21 1 3.8053 -4.8228 -8.8908 22 1 1.7599 -3.6705 -8.2833 23 6 2.4004 -1.4999 -1.9230 24 1 -0.3634 -0.9362 -0.4238 25 1 -0.3633 0.1009 1.0228 26 1 -0.3634 0.8352 -0.5987 27 1 1.2937 2.1132 -0.3901 28 1 2.4323 1.6762 0.9544 29 1 3.9588 0.5273 -0.5956 30 1 3.2229 1.6410 -1.8342 31 1 0.0682 -0.3607 -2.4199 32 1 1.1034 1.0032 -3.0329 33 1 1.7524 -2.9107 -4.0005 34 1 0.2384 -2.1104 -3.5150 35 1 -0.9838 -0.8149 -5.0561 36 1 -1.3128 -0.0209 -7.3611 37 1 0.4823 -0.2526 -9.0277 38 1 2.6268 -1.2724 -8.4011 39 1 5.8146 -3.6433 -7.3634 40 1 3.4689 -1.7041 -1.8532 41 1 1.7838 -2.3240 -1.5644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276242575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:52 Heat of formation + Delta-G solvation = 97.660679 kcal Electronic energy + Delta-G solvation = -21145.680096 eV Core-core repulsion = 18220.471353 eV Total energy + Delta-G solvation = -2925.208743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21287 -38.11277 -36.67616 -33.52769 -31.45560 -30.55797 -30.24468 -27.39266 -26.02547 -25.07368 -24.17802 -23.48152 -21.37315 -21.24720 -19.51636 -17.81071 -17.27311 -16.23315 -15.88583 -15.69409 -15.37930 -14.67442 -14.28405 -14.01339 -13.62950 -13.40202 -13.27101 -12.73745 -12.68020 -12.24958 -12.05114 -11.92928 -11.64789 -11.48542 -11.39299 -11.31476 -10.80500 -10.75687 -10.63882 -10.55019 -10.21856 -9.97818 -9.64645 -9.40731 -9.07995 -8.84746 -8.22677 -7.58825 -7.45896 -6.87018 -4.38867 2.60709 2.73285 3.15586 3.24628 3.36205 3.87622 4.03417 4.40893 4.43584 4.58591 4.59805 4.96431 5.12449 5.25865 5.35677 5.40486 5.58266 5.59575 5.63830 5.69669 5.74864 5.81021 5.95367 5.98956 6.02712 6.07046 6.16566 6.19358 6.25056 6.33260 6.40007 6.61578 6.72721 6.92834 7.01668 7.04593 7.25199 7.44841 7.59070 7.72636 7.80114 8.00742 8.21166 8.50308 8.77727 8.91895 10.14615 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022609 B = 0.005596 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.139313 B = 5002.045736 C = 5787.997050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.467 5.467 3 C -0.002 4.002 4 C -0.113 4.113 5 C 0.026 3.974 6 C 0.007 3.993 7 N -0.450 5.450 8 C 0.090 3.910 9 C -0.173 4.173 10 C -0.076 4.076 11 C -0.249 4.249 12 C -0.080 4.080 13 C -0.238 4.238 14 C 0.109 3.891 15 C -0.434 4.434 16 H 0.103 0.897 17 C 0.083 3.917 18 N -0.808 5.808 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.246 1.246 23 C 0.023 3.977 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.283 0.717 40 H 0.092 0.908 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 4.870 9.105 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.188 5.188 3 C -0.131 4.131 4 C -0.151 4.151 5 C -0.066 4.066 6 C -0.123 4.123 7 N -0.172 5.172 8 C -0.037 4.037 9 C -0.174 4.174 10 C -0.095 4.095 11 C -0.268 4.268 12 C -0.098 4.098 13 C -0.257 4.257 14 C 0.106 3.894 15 C -0.463 4.463 16 H 0.121 0.879 17 C -0.135 4.135 18 N -0.432 5.432 19 Si 0.734 3.266 20 H -0.198 1.198 21 H -0.221 1.221 22 H -0.169 1.169 23 C -0.106 4.106 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.433 4.461 9.167 11.552 hybrid contribution -1.343 -0.106 -0.986 1.670 sum -6.776 4.355 8.181 11.480 Atomic orbital electron populations 1.22825 0.89951 1.01407 1.01799 1.68693 1.08997 1.18964 1.22193 1.23804 0.97741 0.91330 1.00239 1.22828 0.96817 0.97111 0.98298 1.23974 0.96783 0.97642 0.88175 1.24145 0.95387 1.00001 0.92797 1.68661 1.26907 1.10563 1.11046 1.21204 0.94620 0.95535 0.92331 1.19410 0.94088 1.09355 0.94588 1.20453 0.95920 0.97865 0.95232 1.20293 0.99096 1.12807 0.94590 1.20584 0.93884 0.98206 0.97169 1.21033 0.97849 1.09052 0.97785 1.17507 0.91887 0.89675 0.90333 1.19608 1.00057 1.27294 0.99318 0.87941 1.26188 0.93883 0.94226 0.99213 1.69712 1.06800 1.30702 1.36023 0.86395 0.81945 0.77188 0.81108 1.19847 1.22067 1.16896 1.23780 1.02345 0.94669 0.89812 0.91534 0.91341 0.94334 0.91431 0.89897 0.88628 0.89909 0.91350 0.89670 0.90163 0.95579 0.89561 0.89269 0.89189 0.88406 0.90682 0.88951 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 8.67 60.07 0.52 0.40 16 2 N -0.47 -5.98 6.75 -245.22 -1.66 -7.64 16 3 C 0.00 -0.03 7.71 -8.96 -0.07 -0.10 16 4 C -0.11 -1.42 8.22 -26.55 -0.22 -1.64 16 5 C 0.03 0.36 1.33 -141.93 -0.19 0.17 16 6 C 0.01 0.11 6.64 -3.09 -0.02 0.09 16 7 N -0.45 -8.38 5.86 -244.53 -1.43 -9.81 16 8 C 0.09 1.80 4.14 -4.98 -0.02 1.78 16 9 C -0.17 -3.93 5.49 -103.92 -0.57 -4.50 16 10 C -0.08 -1.60 9.65 -39.66 -0.38 -1.99 16 11 C -0.25 -5.27 10.05 -39.29 -0.39 -5.67 16 12 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 13 C -0.24 -5.86 7.17 -38.87 -0.28 -6.14 16 14 C 0.11 2.77 5.10 -106.83 -0.54 2.22 16 15 C -0.43 -11.59 8.60 -37.74 -0.32 -11.92 16 16 H 0.10 2.88 7.17 -52.49 -0.38 2.50 16 17 C 0.08 2.19 5.41 -17.34 -0.09 2.09 16 18 N -0.81 -21.59 13.93 55.55 0.77 -20.81 16 19 Si 0.91 21.04 24.52 -169.99 -4.17 16.87 16 20 H -0.27 -6.19 6.71 56.52 0.38 -5.81 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.25 -5.86 6.86 56.52 0.39 -5.47 16 23 C 0.02 0.38 7.83 -3.09 -0.02 0.35 16 24 H 0.07 0.76 7.67 -51.93 -0.40 0.37 16 25 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.04 0.41 6.91 -51.93 -0.36 0.05 16 27 H 0.07 0.70 7.53 -51.93 -0.39 0.30 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.01 6.07 -51.93 -0.32 0.69 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.70 7.35 -51.93 -0.38 1.32 16 34 H 0.03 0.47 7.24 -51.93 -0.38 0.09 16 35 H 0.09 1.60 8.03 -52.49 -0.42 1.18 16 36 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.10 2.42 4.77 -52.49 -0.25 2.17 16 39 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -27.69 321.71 -10.88 -38.56 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.23 Total: 5.00 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -3.01 Total: -27.01 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -2.31 Total: -38.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.17 Total: 16.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.69 -10.88 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276242575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.223 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds