Wall clock time and date at job start Mon Mar 30 2020 19:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99916 * 2 1 4 4 H 1.07999 * 119.99688 * 203.04220 * 3 2 1 5 5 C 1.38815 * 120.00192 * 23.05231 * 3 2 1 6 6 N 1.31617 * 119.99358 * 12.93330 * 5 3 2 7 7 Si 1.86794 * 120.00088 * 192.93545 * 5 3 2 8 8 H 1.48504 * 109.47167 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47075 * 119.99998 * 7 5 3 10 10 H 1.48507 * 109.46917 * 240.00102 * 7 5 3 11 11 C 1.46499 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47464 * 89.99635 * 11 2 1 13 13 C 1.52994 * 109.47183 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.47186 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99857 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00618 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99535 * 179.97438 * 15 14 13 18 18 H 1.09001 * 110.01223 * 59.30392 * 17 15 14 19 19 C 1.54258 * 110.03317 * 297.90848 * 17 15 14 20 20 C 1.54961 * 104.16137 * 217.13487 * 19 17 15 21 21 C 1.54895 * 102.77654 * 37.89286 * 20 19 17 22 22 H 1.09005 * 110.48616 * 203.40608 * 21 20 19 23 23 F 1.39900 * 110.59764 * 80.81420 * 21 20 19 24 24 C 1.53874 * 110.02981 * 180.69052 * 17 15 14 25 25 H 1.08999 * 109.46864 * 275.12222 * 1 2 3 26 26 H 1.08997 * 109.46917 * 35.11522 * 1 2 3 27 27 H 1.08993 * 109.47072 * 155.12180 * 1 2 3 28 28 H 0.97003 * 119.99325 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47062 * 329.99014 * 11 2 1 30 30 H 1.09005 * 109.46961 * 209.99936 * 11 2 1 31 31 H 1.09001 * 109.46752 * 59.99746 * 12 11 2 32 32 H 1.08997 * 109.46683 * 300.00262 * 12 11 2 33 33 H 1.09005 * 109.47149 * 300.00244 * 13 12 11 34 34 H 1.09001 * 109.47436 * 60.00223 * 13 12 11 35 35 H 0.96998 * 119.99967 * 0.02562 * 14 13 12 36 36 H 1.08991 * 110.48959 * 335.78442 * 19 17 15 37 37 H 1.09005 * 110.48386 * 98.42992 * 19 17 15 38 38 H 1.09004 * 110.72506 * 279.57867 * 20 19 17 39 39 H 1.08996 * 110.92685 * 156.29521 * 20 19 17 40 40 H 1.09001 * 110.03729 * 238.56965 * 24 17 15 41 41 H 1.09003 * 110.03553 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4120 2.2596 1.1461 7 14 2.3158 4.0074 0.1455 8 1 3.5698 3.8264 -0.6291 9 1 1.3714 4.8507 -0.6304 10 1 2.6243 4.6703 1.4382 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2179 -3.0345 -1.4438 14 7 3.4615 -3.4573 -2.8251 15 6 4.1248 -4.6043 -3.0718 16 8 4.5197 -5.2868 -2.1503 17 6 4.3749 -5.0394 -4.4929 18 1 4.9520 -4.2794 -5.0196 19 6 3.0335 -5.2797 -5.2157 20 6 3.3064 -6.5055 -6.1236 21 6 4.2215 -7.3893 -5.2400 22 1 4.8173 -8.0601 -5.8591 23 9 3.4612 -8.1196 -4.3203 24 6 5.1303 -6.3798 -4.5085 25 1 -0.3633 0.0918 1.0236 26 1 -0.3633 0.8406 -0.5911 27 1 -0.3633 -0.9322 -0.4323 28 1 -0.0151 3.0661 1.4748 29 1 1.6084 -2.0286 0.5131 30 1 3.1499 -1.1386 0.5133 31 1 3.0415 -0.9500 -1.9568 32 1 1.5000 -1.8399 -1.9570 33 1 4.1704 -2.9040 -0.9300 34 1 2.6293 -3.7946 -0.9301 35 1 3.1461 -2.9113 -3.5622 36 1 2.2473 -5.5061 -4.4956 37 1 2.7632 -4.4115 -5.8168 38 1 3.8237 -6.2035 -7.0343 39 1 2.3796 -7.0271 -6.3624 40 1 6.0736 -6.2707 -5.0436 41 1 5.3156 -6.7159 -3.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316846292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:58:18 Heat of formation + Delta-G solvation = -86.693028 kcal Electronic energy + Delta-G solvation = -20824.371621 eV Core-core repulsion = 17460.399476 eV Total energy + Delta-G solvation = -3363.972145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.76892 -40.06964 -37.04905 -36.16768 -34.76266 -32.06826 -30.28517 -29.30336 -28.67409 -25.94286 -25.26086 -22.55422 -21.63154 -21.08869 -20.48509 -19.51839 -17.58248 -16.91762 -16.70865 -15.91715 -15.82063 -15.29974 -15.14089 -14.81671 -14.36833 -13.92563 -13.65980 -13.39028 -13.23335 -12.93651 -12.69509 -12.07704 -11.90154 -11.73760 -11.66918 -11.40428 -11.20645 -11.02640 -10.98410 -10.91889 -10.80953 -10.77449 -10.47728 -10.18502 -9.87965 -9.79969 -9.74228 -8.97008 -8.54974 -6.73724 -5.71861 -3.19024 2.63085 3.19571 3.37102 3.44135 3.46209 3.91895 4.03040 4.39438 4.46759 4.49954 4.81656 4.86152 4.95768 5.09518 5.11066 5.20993 5.27745 5.43429 5.45367 5.46699 5.51347 5.74278 5.82271 5.86467 5.90439 6.01979 6.10801 6.20392 6.41786 6.58528 6.75123 6.76612 6.94038 7.37644 7.54280 7.73927 7.81070 8.24028 8.40675 9.24467 9.88125 10.37304 11.32948 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.002918 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.427212 B = 9593.268865 C = 9726.045644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.514 3.486 16 O -0.540 6.540 17 C -0.114 4.114 18 H 0.103 0.897 19 C -0.117 4.117 20 C -0.148 4.148 21 C 0.083 3.917 22 H 0.089 0.911 23 F -0.208 7.208 24 C -0.146 4.146 25 H 0.031 0.969 26 H 0.039 0.961 27 H -0.003 1.003 28 H 0.252 0.748 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 -16.095 -16.161 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.375 5.375 15 C 0.300 3.700 16 O -0.418 6.418 17 C -0.136 4.136 18 H 0.121 0.879 19 C -0.155 4.155 20 C -0.185 4.185 21 C 0.047 3.953 22 H 0.107 0.893 23 F -0.188 7.188 24 C -0.184 4.184 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.583 -16.439 -15.351 23.435 hybrid contribution 0.125 1.333 -0.487 1.424 sum 6.708 -15.106 -15.838 22.892 Atomic orbital electron populations 1.20788 0.82678 0.95297 0.99491 1.43903 1.01854 1.00686 1.86165 1.19229 0.98254 0.85630 1.35357 0.91404 1.25041 0.97925 0.98580 0.98242 1.70085 1.19464 1.27050 1.38658 0.86190 0.78520 0.84348 0.77517 1.20339 1.21645 1.21719 1.20599 0.96351 0.88509 0.91858 1.22521 0.99431 0.94208 1.02898 1.21468 1.00385 0.96972 0.81624 1.46120 1.57872 1.23728 1.09820 1.20467 0.77619 0.80767 0.91180 1.90674 1.51153 1.53703 1.46223 1.21940 0.98485 0.99270 0.93875 0.87927 1.22395 0.96002 0.98642 0.98431 1.23113 1.00652 0.96385 0.98377 1.22345 0.91715 0.92482 0.88757 0.89319 1.92839 1.78020 1.79056 1.68925 1.22811 0.98101 0.93077 1.04423 0.95076 0.94175 0.98407 0.93818 0.94414 0.93293 0.91592 0.92250 0.91662 0.91815 0.76624 0.90524 0.90071 0.89381 0.89968 0.89679 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.85 0.54 4.55 16 2 N -0.60 -15.20 2.92 -181.12 -0.53 -15.73 16 3 C -0.26 -7.01 9.65 -15.06 -0.15 -7.16 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.01 5.10 -17.43 -0.09 -0.08 16 6 N -0.91 -26.67 10.71 55.49 0.59 -26.07 16 7 Si 0.90 21.81 29.57 -169.99 -5.03 16.78 16 8 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.16 3.14 5.64 -4.04 -0.02 3.12 16 12 C -0.15 -2.46 5.65 -26.73 -0.15 -2.61 16 13 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 14 N -0.72 -8.91 5.49 -60.29 -0.33 -9.24 16 15 C 0.51 6.71 7.00 -10.98 -0.08 6.64 16 16 O -0.54 -9.28 15.21 5.56 0.08 -9.19 16 17 C -0.11 -1.02 3.29 -90.66 -0.30 -1.32 16 18 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 19 C -0.12 -0.89 6.30 -25.04 -0.16 -1.05 16 20 C -0.15 -0.94 6.70 -24.70 -0.17 -1.11 16 21 C 0.08 0.68 4.65 -25.07 -0.12 0.56 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 23 F -0.21 -2.51 17.18 2.25 0.04 -2.47 16 24 C -0.15 -1.31 6.20 -25.61 -0.16 -1.47 16 25 H 0.03 0.84 7.34 -51.93 -0.38 0.45 16 26 H 0.04 1.06 7.34 -51.93 -0.38 0.67 16 27 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.94 8.46 -40.82 -0.35 3.60 16 36 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 1.27 6.37 -51.93 -0.33 0.94 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -33.01 336.35 -7.84 -40.85 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.87 Total: -1.80 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.87 Total: 1.80 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.27 Total: -51.05 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.01 -7.84 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316846292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.840 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds