Wall clock time and date at job start Mon Mar 30 2020 19:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99916 * 2 1 4 4 H 1.07999 * 119.99688 * 203.04220 * 3 2 1 5 5 C 1.38815 * 120.00192 * 23.05231 * 3 2 1 6 6 N 1.31617 * 119.99358 * 12.93330 * 5 3 2 7 7 Si 1.86794 * 120.00088 * 192.93545 * 5 3 2 8 8 H 1.48504 * 109.47167 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47075 * 119.99998 * 7 5 3 10 10 H 1.48507 * 109.46917 * 240.00102 * 7 5 3 11 11 C 1.46499 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47464 * 89.99635 * 11 2 1 13 13 C 1.52994 * 109.47183 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.47186 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99857 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00618 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99535 * 179.97438 * 15 14 13 18 18 H 1.09001 * 110.01223 * 59.30392 * 17 15 14 19 19 C 1.54258 * 110.03317 * 297.90848 * 17 15 14 20 20 C 1.54961 * 104.16137 * 217.13487 * 19 17 15 21 21 C 1.54895 * 102.77654 * 37.89286 * 20 19 17 22 22 H 1.09005 * 110.48616 * 203.40608 * 21 20 19 23 23 F 1.39900 * 110.59764 * 80.81420 * 21 20 19 24 24 C 1.53874 * 110.02981 * 180.69052 * 17 15 14 25 25 H 1.08999 * 109.46864 * 275.12222 * 1 2 3 26 26 H 1.08997 * 109.46917 * 35.11522 * 1 2 3 27 27 H 1.08993 * 109.47072 * 155.12180 * 1 2 3 28 28 H 0.97003 * 119.99325 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47062 * 329.99014 * 11 2 1 30 30 H 1.09005 * 109.46961 * 209.99936 * 11 2 1 31 31 H 1.09001 * 109.46752 * 59.99746 * 12 11 2 32 32 H 1.08997 * 109.46683 * 300.00262 * 12 11 2 33 33 H 1.09005 * 109.47149 * 300.00244 * 13 12 11 34 34 H 1.09001 * 109.47436 * 60.00223 * 13 12 11 35 35 H 0.96998 * 119.99967 * 0.02562 * 14 13 12 36 36 H 1.08991 * 110.48959 * 335.78442 * 19 17 15 37 37 H 1.09005 * 110.48386 * 98.42992 * 19 17 15 38 38 H 1.09004 * 110.72506 * 279.57867 * 20 19 17 39 39 H 1.08996 * 110.92685 * 156.29521 * 20 19 17 40 40 H 1.09001 * 110.03729 * 238.56965 * 24 17 15 41 41 H 1.09003 * 110.03553 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4120 2.2596 1.1461 7 14 2.3158 4.0074 0.1455 8 1 3.5698 3.8264 -0.6291 9 1 1.3714 4.8507 -0.6304 10 1 2.6243 4.6703 1.4382 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2179 -3.0345 -1.4438 14 7 3.4615 -3.4573 -2.8251 15 6 4.1248 -4.6043 -3.0718 16 8 4.5197 -5.2868 -2.1503 17 6 4.3749 -5.0394 -4.4929 18 1 4.9520 -4.2794 -5.0196 19 6 3.0335 -5.2797 -5.2157 20 6 3.3064 -6.5055 -6.1236 21 6 4.2215 -7.3893 -5.2400 22 1 4.8173 -8.0601 -5.8591 23 9 3.4612 -8.1196 -4.3203 24 6 5.1303 -6.3798 -4.5085 25 1 -0.3633 0.0918 1.0236 26 1 -0.3633 0.8406 -0.5911 27 1 -0.3633 -0.9322 -0.4323 28 1 -0.0151 3.0661 1.4748 29 1 1.6084 -2.0286 0.5131 30 1 3.1499 -1.1386 0.5133 31 1 3.0415 -0.9500 -1.9568 32 1 1.5000 -1.8399 -1.9570 33 1 4.1704 -2.9040 -0.9300 34 1 2.6293 -3.7946 -0.9301 35 1 3.1461 -2.9113 -3.5622 36 1 2.2473 -5.5061 -4.4956 37 1 2.7632 -4.4115 -5.8168 38 1 3.8237 -6.2035 -7.0343 39 1 2.3796 -7.0271 -6.3624 40 1 6.0736 -6.2707 -5.0436 41 1 5.3156 -6.7159 -3.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316846292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:58:18 Heat of formation + Delta-G solvation = -107.892696 kcal Electronic energy + Delta-G solvation = -20825.290907 eV Core-core repulsion = 17460.399476 eV Total energy + Delta-G solvation = -3364.891431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.54455 -41.06390 -38.12606 -37.54048 -36.18494 -33.79569 -31.85223 -30.03560 -29.45837 -27.94518 -26.83077 -23.94254 -22.70804 -22.10707 -21.69047 -20.51123 -18.73800 -18.42568 -17.61242 -17.13492 -16.81038 -16.65919 -16.30183 -15.88344 -15.59114 -15.43833 -14.79089 -14.74561 -14.59316 -14.29800 -13.96426 -13.38366 -13.07910 -12.83007 -12.77842 -12.61743 -12.52335 -12.45900 -12.34776 -12.23812 -12.07357 -11.88243 -11.82746 -11.56363 -11.53829 -11.49409 -10.84288 -10.63009 -10.10006 -8.78109 -7.82411 -5.32343 1.46918 1.47812 1.58557 1.62712 2.19701 2.52071 3.30777 3.32001 3.40613 3.64813 3.74108 3.90724 4.10069 4.13365 4.23288 4.31630 4.42524 4.45137 4.46515 4.51899 4.63308 4.68898 4.79841 4.85409 4.91622 4.95755 5.02431 5.15229 5.24338 5.27653 5.28027 5.36661 5.46841 5.50746 5.63825 5.70948 6.33268 6.56719 7.15463 7.25190 7.87350 8.31439 9.20980 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.002918 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.427212 B = 9593.268865 C = 9726.045644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.262 4.262 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.264 1.264 9 H -0.290 1.290 10 H -0.294 1.294 11 C 0.149 3.851 12 C -0.126 4.126 13 C 0.130 3.870 14 N -0.716 5.716 15 C 0.508 3.492 16 O -0.589 6.589 17 C -0.108 4.108 18 H 0.135 0.865 19 C -0.117 4.117 20 C -0.139 4.139 21 C 0.070 3.930 22 H 0.116 0.884 23 F -0.236 7.236 24 C -0.148 4.148 25 H 0.002 0.998 26 H 0.016 0.984 27 H 0.032 0.968 28 H 0.248 0.752 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.415 0.585 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -16.172 -18.996 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.188 1.188 9 H -0.217 1.217 10 H -0.221 1.221 11 C 0.023 3.977 12 C -0.166 4.166 13 C 0.006 3.994 14 N -0.367 5.367 15 C 0.296 3.704 16 O -0.469 6.469 17 C -0.129 4.129 18 H 0.153 0.847 19 C -0.155 4.155 20 C -0.176 4.176 21 C 0.034 3.966 22 H 0.134 0.866 23 F -0.217 7.217 24 C -0.186 4.186 25 H 0.021 0.979 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.659 -16.535 -18.230 25.776 hybrid contribution -0.177 1.269 0.422 1.349 sum 7.482 -15.266 -17.808 24.620 Atomic orbital electron populations 1.20543 0.82832 0.95989 0.97594 1.44164 1.02142 1.01733 1.86416 1.19577 0.98512 0.86705 1.34403 0.90959 1.25847 0.98699 1.02084 0.98556 1.70254 1.20955 1.27547 1.40060 0.85153 0.78066 0.79858 0.77061 1.18832 1.21706 1.22134 1.20778 0.95667 0.86901 0.94373 1.22134 0.99888 0.94731 0.99844 1.21155 0.99474 0.95745 0.83076 1.45984 1.57626 1.23904 1.09234 1.21289 0.76439 0.80026 0.92668 1.90661 1.53051 1.55049 1.48159 1.22048 0.99807 1.00003 0.91061 0.84704 1.22438 0.94304 1.00440 0.98284 1.23137 1.00626 0.95092 0.98756 1.22755 0.92165 0.93040 0.88634 0.86577 1.92783 1.78844 1.79853 1.70245 1.22845 0.99758 0.93249 1.02763 0.97939 0.96523 0.94933 0.94316 0.93516 0.93902 0.91967 0.91603 0.92581 0.92556 0.74875 0.93095 0.87385 0.86181 0.89950 0.86772 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.98 127.77 1.15 9.86 16 2 N -0.62 -31.12 2.92 -726.94 -2.12 -33.24 16 3 C -0.26 -14.31 9.65 84.03 0.81 -13.50 16 4 H 0.07 3.81 7.86 -2.91 -0.02 3.79 16 5 C -0.06 -3.21 5.10 84.86 0.43 -2.78 16 6 N -0.94 -56.22 10.71 21.65 0.23 -55.99 16 7 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 8 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 C 0.15 5.95 5.64 86.38 0.49 6.43 16 12 C -0.13 -3.93 5.65 30.59 0.17 -3.76 16 13 C 0.13 3.68 5.67 86.38 0.49 4.17 16 14 N -0.72 -16.48 5.49 -463.06 -2.54 -19.03 16 15 C 0.51 12.79 7.00 87.66 0.61 13.40 16 16 O -0.59 -20.57 15.21 -3.02 -0.05 -20.62 16 17 C -0.11 -1.66 3.29 -10.82 -0.04 -1.70 16 18 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 19 C -0.12 -1.44 6.30 31.69 0.20 -1.24 16 20 C -0.14 -1.32 6.70 31.91 0.21 -1.10 16 21 C 0.07 1.00 4.65 31.67 0.15 1.15 16 22 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 23 F -0.24 -5.69 17.18 44.97 0.77 -4.91 16 24 C -0.15 -2.39 6.20 31.32 0.19 -2.20 16 25 H 0.00 0.13 7.34 -2.39 -0.02 0.11 16 26 H 0.02 0.87 7.34 -2.39 -0.02 0.85 16 27 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 30 H 0.04 1.74 8.04 -2.38 -0.02 1.72 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 7.08 8.46 -92.71 -0.78 6.29 16 36 H 0.05 0.90 7.85 -2.39 -0.02 0.88 16 37 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.66 6.37 -2.39 -0.02 1.64 16 Total: -1.00 -73.46 336.35 3.42 -70.04 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.22 Total: 8.13 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.87 Total: 8.73 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.44 Total: -108.26 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.77 Total: -4.91 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.46 3.42 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316846292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.853 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds