Wall clock time and date at job start Mon Mar 30 2020 19:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 C 1.38232 * 119.99299 * 269.72512 * 14 13 12 16 16 C 1.38240 * 119.99280 * 179.76572 * 15 14 13 17 17 C 1.38234 * 120.00366 * 0.48400 * 16 15 14 18 18 C 1.50697 * 120.00151 * 179.76920 * 17 16 15 19 19 C 1.53004 * 109.47306 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47342 * 120.02158 * 18 17 16 21 21 C 1.47208 * 109.47136 * 240.01990 * 18 17 16 22 22 N 9.39193 * 113.74057 * 96.57818 * 2 1 3 23 23 C 1.38231 * 119.99635 * 359.78936 * 17 16 15 24 24 C 1.38235 * 119.99928 * 89.99413 * 14 13 12 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 30 30 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 31 31 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 32 32 H 1.07994 * 120.00818 * 359.97438 * 15 14 13 33 33 H 1.08007 * 119.99992 * 180.25012 * 16 15 14 34 34 H 1.09003 * 109.46902 * 60.00045 * 19 18 17 35 35 H 1.08997 * 109.46960 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.46984 * 300.00123 * 19 18 17 37 37 H 1.09005 * 109.46867 * 59.99750 * 20 18 17 38 38 H 1.08997 * 109.47471 * 179.97438 * 20 18 17 39 39 H 1.09003 * 109.47074 * 300.00082 * 20 18 17 40 40 H 1.08003 * 119.99936 * 179.97438 * 23 17 16 41 41 H 1.07996 * 120.00217 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 1.6960 -1.1476 4.4056 16 6 2.1605 -1.8342 5.5118 17 6 3.5169 -1.8865 5.7736 18 6 4.0228 -2.6306 6.9824 19 6 2.8395 -3.2314 7.7437 20 6 4.9630 -3.7515 6.5346 21 6 4.7511 -1.7012 7.8614 22 7 5.3112 -0.9849 8.5406 23 6 4.4090 -1.2557 4.9268 24 6 3.9449 -0.5734 3.8177 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 2.9174 -1.1205 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0872 0.6162 2.5525 32 1 0.6360 -1.1030 4.2036 33 1 1.4635 -2.3268 6.1736 34 1 2.3003 -3.9197 7.0927 35 1 3.2055 -3.7693 8.6182 36 1 2.1696 -2.4330 8.0627 37 1 5.8061 -3.3236 5.9921 38 1 5.3294 -4.2895 7.4089 39 1 4.4238 -4.4398 5.8836 40 1 5.4686 -1.2961 5.1315 41 1 4.6419 -0.0803 3.1563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:40 Heat of formation + Delta-G solvation = 39.053268 kcal Electronic energy + Delta-G solvation = -19858.641001 eV Core-core repulsion = 16930.890850 eV Total energy + Delta-G solvation = -2927.750151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07309 -37.61236 -35.93270 -34.86578 -32.66907 -31.04856 -30.50616 -27.96706 -27.73959 -25.44828 -24.69977 -23.23159 -22.26355 -20.75452 -19.78037 -17.80902 -16.81627 -16.04819 -15.41296 -15.01773 -14.76834 -14.35338 -14.12775 -13.90942 -13.70606 -13.61177 -13.41566 -13.13099 -12.86388 -12.47430 -12.33242 -12.25196 -11.93127 -11.82965 -11.78689 -11.53328 -11.23245 -11.00830 -10.81360 -10.77779 -10.65805 -10.28783 -10.14969 -9.96577 -8.88626 -8.82093 -8.55758 -8.46027 -7.30986 -6.04745 -4.11518 1.32256 1.50926 2.55875 2.58759 3.29817 3.34415 3.37035 3.54530 3.94201 4.34927 4.38947 4.49810 4.62929 5.01416 5.03698 5.11462 5.23639 5.26449 5.37678 5.38390 5.43815 5.52492 5.61503 5.65009 5.73151 5.83498 5.93877 5.99491 6.20886 6.26762 6.50352 6.53156 6.81843 6.89765 7.06723 7.11127 7.20008 7.34228 7.46676 7.75409 7.86684 8.24668 8.34755 8.62741 8.98537 9.54555 11.01514 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.003247 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.125470 B = 8620.801523 C = 8861.562082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.092 3.908 14 C -0.057 4.057 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.098 4.098 18 C 0.080 3.920 19 C -0.144 4.144 20 C -0.139 4.139 21 C 0.220 3.780 22 N -0.436 5.436 23 C -0.108 4.108 24 C -0.113 4.113 25 H 0.004 0.996 26 H 0.080 0.920 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 -7.738 17.393 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.037 4.037 14 C -0.057 4.057 15 C -0.117 4.117 16 C -0.127 4.127 17 C -0.099 4.099 18 C 0.077 3.923 19 C -0.202 4.202 20 C -0.197 4.197 21 C -0.098 4.098 22 N -0.110 5.110 23 C -0.126 4.126 24 C -0.132 4.132 25 H 0.023 0.977 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.784 -6.752 18.435 19.994 hybrid contribution 0.895 -0.063 -1.445 1.701 sum 4.679 -6.815 16.991 18.895 Atomic orbital electron populations 1.21719 0.97830 0.99382 0.99361 1.19129 0.92668 0.92344 0.85465 0.98127 1.21222 1.31611 1.12578 0.90432 0.92234 1.24917 0.95015 0.94982 0.99047 1.69884 1.36556 1.22826 1.23620 0.86576 0.79084 0.79801 0.82035 1.20148 1.21300 1.20317 1.60804 1.32205 1.32647 1.05570 1.20949 1.00007 0.93397 0.89365 1.20152 0.93085 0.96651 0.95818 1.21071 1.00048 0.96696 0.93879 1.21085 0.94291 0.99473 0.97891 1.19276 0.94018 1.00998 0.95657 1.17077 0.94558 0.90860 0.89807 1.21989 0.96302 1.01549 1.00387 1.21929 0.98915 0.96665 1.02183 1.29015 0.93443 0.93803 0.93528 1.81153 1.09719 1.09738 1.10391 1.20867 0.98945 0.97827 0.94937 1.21065 0.95375 0.99552 0.97190 0.97713 0.90090 0.94909 0.92836 0.85123 0.95322 0.90857 0.85595 0.85426 0.89773 0.91476 0.91268 0.91472 0.91537 0.89944 0.86594 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.26 2.60 -68.86 -0.18 5.08 16 3 H 0.00 0.03 7.80 -51.93 -0.40 -0.38 16 4 C -0.52 -14.08 8.59 -34.44 -0.30 -14.38 16 5 H 0.06 1.58 7.62 -52.48 -0.40 1.18 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.15 6.29 -109.22 -0.69 -14.84 16 13 C 0.09 1.61 5.61 -4.98 -0.03 1.58 16 14 C -0.06 -0.83 5.39 -104.62 -0.56 -1.39 16 15 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 16 C -0.11 -1.16 8.98 -39.58 -0.36 -1.52 16 17 C -0.10 -1.02 4.74 -104.63 -0.50 -1.52 16 18 C 0.08 0.66 0.79 -158.44 -0.12 0.53 16 19 C -0.14 -0.86 7.09 37.16 0.26 -0.60 16 20 C -0.14 -0.91 8.24 37.16 0.31 -0.60 16 21 C 0.22 2.39 13.46 -20.79 -0.28 2.12 16 22 N -0.44 -5.87 18.53 42.11 0.78 -5.09 16 23 C -0.11 -1.26 8.81 -39.58 -0.35 -1.60 16 24 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 26 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.80 8.22 -39.29 -0.32 6.48 16 30 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 31 H 0.07 1.29 7.38 -51.93 -0.38 0.91 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.13 1.01 5.90 -52.48 -0.31 0.70 16 34 H 0.08 0.40 7.51 -51.93 -0.39 0.01 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 7.51 -51.93 -0.39 0.03 16 37 H 0.07 0.47 7.39 -51.93 -0.38 0.08 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.12 1.20 7.57 -52.48 -0.40 0.80 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -29.95 340.59 -7.96 -37.91 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.17 Total: 2.44 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.62 Total: -16.98 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.72 Total: -44.52 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.95 -7.96 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.967 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds