Wall clock time and date at job start Mon Mar 30 2020 19:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 C 1.38232 * 119.99299 * 269.72512 * 14 13 12 16 16 C 1.38240 * 119.99280 * 179.76572 * 15 14 13 17 17 C 1.38234 * 120.00366 * 0.48400 * 16 15 14 18 18 C 1.50697 * 120.00151 * 179.76920 * 17 16 15 19 19 C 1.53004 * 109.47306 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47342 * 120.02158 * 18 17 16 21 21 C 1.47208 * 109.47136 * 240.01990 * 18 17 16 22 22 N 9.39193 * 113.74057 * 96.57818 * 2 1 3 23 23 C 1.38231 * 119.99635 * 359.78936 * 17 16 15 24 24 C 1.38235 * 119.99928 * 89.99413 * 14 13 12 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 30 30 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 31 31 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 32 32 H 1.07994 * 120.00818 * 359.97438 * 15 14 13 33 33 H 1.08007 * 119.99992 * 180.25012 * 16 15 14 34 34 H 1.09003 * 109.46902 * 60.00045 * 19 18 17 35 35 H 1.08997 * 109.46960 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.46984 * 300.00123 * 19 18 17 37 37 H 1.09005 * 109.46867 * 59.99750 * 20 18 17 38 38 H 1.08997 * 109.47471 * 179.97438 * 20 18 17 39 39 H 1.09003 * 109.47074 * 300.00082 * 20 18 17 40 40 H 1.08003 * 119.99936 * 179.97438 * 23 17 16 41 41 H 1.07996 * 120.00217 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 1.6960 -1.1476 4.4056 16 6 2.1605 -1.8342 5.5118 17 6 3.5169 -1.8865 5.7736 18 6 4.0228 -2.6306 6.9824 19 6 2.8395 -3.2314 7.7437 20 6 4.9630 -3.7515 6.5346 21 6 4.7511 -1.7012 7.8614 22 7 5.3112 -0.9849 8.5406 23 6 4.4090 -1.2557 4.9268 24 6 3.9449 -0.5734 3.8177 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 2.9174 -1.1205 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0872 0.6162 2.5525 32 1 0.6360 -1.1030 4.2036 33 1 1.4635 -2.3268 6.1736 34 1 2.3003 -3.9197 7.0927 35 1 3.2055 -3.7693 8.6182 36 1 2.1696 -2.4330 8.0627 37 1 5.8061 -3.3236 5.9921 38 1 5.3294 -4.2895 7.4089 39 1 4.4238 -4.4398 5.8836 40 1 5.4686 -1.2961 5.1315 41 1 4.6419 -0.0803 3.1563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:40 Heat of formation + Delta-G solvation = 22.428452 kcal Electronic energy + Delta-G solvation = -19859.361908 eV Core-core repulsion = 16930.890850 eV Total energy + Delta-G solvation = -2928.471057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96069 -38.64044 -37.45053 -35.91960 -34.44248 -32.00673 -31.89436 -29.49940 -28.25802 -27.37965 -25.99945 -24.21369 -23.20296 -21.92413 -21.58736 -18.72816 -18.52621 -17.18127 -16.77347 -16.39494 -15.89438 -15.57824 -15.48393 -15.06333 -14.82585 -14.60276 -14.52431 -14.31436 -13.92725 -13.53628 -13.50710 -13.30743 -13.00567 -12.84303 -12.77715 -12.68291 -12.54040 -12.52396 -12.27849 -12.20229 -12.13956 -11.99977 -11.56476 -11.53154 -10.90450 -10.56818 -9.77071 -9.57517 -9.04830 -8.12879 -6.27465 0.34127 0.55336 1.43656 1.45427 1.53105 1.72452 1.74008 2.42098 2.67682 3.07449 3.15896 3.59349 3.77597 3.85153 4.03906 4.05410 4.15387 4.17684 4.49965 4.57986 4.74069 4.75981 4.84585 4.87499 4.92085 4.95182 4.96417 5.07982 5.12359 5.21119 5.22362 5.30017 5.37405 5.46850 5.54241 5.62428 5.66531 5.81685 5.86774 6.09892 6.22964 6.45851 6.51634 6.75420 6.98763 7.43108 8.92540 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.003247 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.125470 B = 8620.801523 C = 8861.562082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.098 3.902 14 C -0.078 4.078 15 C -0.108 4.108 16 C -0.100 4.100 17 C -0.090 4.090 18 C 0.084 3.916 19 C -0.146 4.146 20 C -0.140 4.140 21 C 0.241 3.759 22 N -0.486 5.486 23 C -0.112 4.112 24 C -0.125 4.125 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -9.956 18.606 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.031 4.031 14 C -0.078 4.078 15 C -0.126 4.126 16 C -0.118 4.118 17 C -0.091 4.091 18 C 0.081 3.919 19 C -0.204 4.204 20 C -0.198 4.198 21 C -0.077 4.077 22 N -0.161 5.161 23 C -0.130 4.130 24 C -0.143 4.143 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.919 -8.977 19.669 21.973 hybrid contribution 0.870 0.626 -1.733 2.038 sum 4.789 -8.352 17.936 20.357 Atomic orbital electron populations 1.21540 0.97556 0.98985 0.99075 1.18941 0.92888 0.90711 0.86822 1.01438 1.21569 1.31833 1.12790 0.91602 0.92181 1.25739 0.95132 0.95656 1.02070 1.70018 1.37437 1.24040 1.24270 0.85540 0.78726 0.78725 0.78212 1.19478 1.20996 1.19586 1.60715 1.32212 1.32821 1.04886 1.20879 0.99740 0.93024 0.89476 1.19917 0.93992 0.98389 0.95539 1.21206 0.99999 0.96940 0.94477 1.21401 0.94929 0.98307 0.97149 1.19550 0.93885 0.99894 0.95809 1.17300 0.95617 0.90439 0.88559 1.22080 0.95310 1.01943 1.01090 1.21984 0.98480 0.96200 1.03099 1.29520 0.92360 0.93031 0.92740 1.81180 1.11500 1.11230 1.12190 1.21047 0.99937 0.97491 0.94480 1.21097 0.94887 1.00271 0.98083 0.95824 0.92509 0.95142 0.92812 0.85078 0.96363 0.91246 0.85334 0.82097 0.87877 0.90028 0.91240 0.92095 0.89915 0.88690 0.85439 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.21 10.96 2.60 44.17 0.11 11.08 16 3 H -0.03 -1.81 7.80 -2.39 -0.02 -1.83 16 4 C -0.54 -29.61 8.59 25.60 0.22 -29.39 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.67 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.68 -28.51 6.29 -499.46 -3.14 -31.66 16 13 C 0.10 3.50 5.61 85.56 0.48 3.98 16 14 C -0.08 -2.27 5.39 -19.87 -0.11 -2.38 16 15 C -0.11 -2.64 9.70 22.27 0.22 -2.43 16 16 C -0.10 -1.84 8.98 22.27 0.20 -1.64 16 17 C -0.09 -1.64 4.74 -19.87 -0.09 -1.73 16 18 C 0.08 1.12 0.79 -54.73 -0.04 1.07 16 19 C -0.15 -1.15 7.09 71.98 0.51 -0.64 16 20 C -0.14 -1.37 8.24 71.98 0.59 -0.78 16 21 C 0.24 4.75 13.46 89.46 1.20 5.95 16 22 N -0.49 -12.58 18.53 19.99 0.37 -12.21 16 23 C -0.11 -2.44 8.81 22.27 0.20 -2.24 16 24 C -0.12 -3.32 9.70 22.27 0.22 -3.10 16 25 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 26 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.33 13.84 8.22 -89.69 -0.74 13.10 16 30 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 31 H 0.07 2.49 7.38 -2.39 -0.02 2.47 16 32 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.16 1.85 5.90 -2.91 -0.02 1.83 16 34 H 0.10 0.48 7.51 -2.39 -0.02 0.46 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.58 7.51 -2.39 -0.02 0.56 16 37 H 0.06 0.69 7.39 -2.38 -0.02 0.67 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 2.45 7.57 -2.91 -0.02 2.43 16 41 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -65.38 340.59 4.60 -60.78 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.29 Total: 16.63 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.82 Total: -26.03 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -2.53 Total: -96.54 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.38 4.60 -60.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.204 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds