Wall clock time and date at job start Mon Mar 30 2020 19:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46525 * 2 1 4 4 C 1.50692 * 109.47208 * 119.99911 * 2 1 3 5 5 H 1.07995 * 120.00211 * 120.00019 * 4 2 1 6 6 C 1.37879 * 119.99843 * 300.00239 * 4 2 1 7 7 N 1.31518 * 119.99627 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00290 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47115 * 89.99861 * 8 6 4 10 10 H 1.48500 * 109.47057 * 210.00162 * 8 6 4 11 11 H 1.48505 * 109.46699 * 329.99779 * 8 6 4 12 12 N 1.46903 * 109.46961 * 240.00302 * 2 1 3 13 13 C 1.46900 * 111.00117 * 85.00175 * 12 2 1 14 14 C 1.50703 * 109.46725 * 180.02562 * 13 12 2 15 15 C 1.38234 * 120.00257 * 89.99983 * 14 13 12 16 16 C 1.38238 * 119.99675 * 180.27927 * 15 14 13 17 17 C 1.38229 * 120.00124 * 359.45911 * 16 15 14 18 18 C 1.50699 * 120.00230 * 180.28369 * 17 16 15 19 19 C 1.53004 * 109.46866 * 0.27700 * 18 17 16 20 20 C 1.53001 * 109.47245 * 120.27226 * 18 17 16 21 21 C 1.47195 * 109.47254 * 240.27816 * 18 17 16 22 22 N 8.72213 * 117.98237 * 233.85343 * 2 1 3 23 23 C 1.38234 * 119.99957 * 0.56005 * 17 16 15 24 24 C 1.38234 * 119.99503 * 270.01583 * 14 13 12 25 25 H 1.08995 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47059 * 300.00275 * 1 2 3 27 27 H 1.09000 * 109.46917 * 60.00063 * 1 2 3 28 28 H 0.97007 * 119.99588 * 179.97438 * 7 6 4 29 29 H 1.00894 * 110.99789 * 321.03824 * 12 2 1 30 30 H 1.08988 * 109.47477 * 59.99515 * 13 12 2 31 31 H 1.09000 * 109.46566 * 299.99338 * 13 12 2 32 32 H 1.08002 * 119.99744 * 359.97438 * 15 14 13 33 33 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 34 34 H 1.08998 * 109.47193 * 60.00236 * 19 18 17 35 35 H 1.08998 * 109.46982 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47415 * 300.00127 * 19 18 17 37 37 H 1.09001 * 109.46898 * 60.00098 * 20 18 17 38 38 H 1.08998 * 109.47157 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.47605 * 300.00247 * 20 18 17 40 40 H 1.08001 * 120.00274 * 179.72697 * 23 17 16 41 41 H 1.07997 * 120.00460 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8028 0.8726 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5218 -3.5561 15 6 1.6944 -1.1519 -4.4024 16 6 2.1580 -1.8397 -5.5084 17 6 3.5137 -1.8878 -5.7740 18 6 4.0186 -2.6322 -6.9831 19 6 2.8344 -3.2316 -7.7443 20 6 4.7760 -1.6666 -7.8969 21 6 4.9223 -3.7115 -6.5529 22 7 5.6225 -4.5433 -6.2198 23 6 4.4067 -1.2580 -4.9274 24 6 3.9435 -0.5748 -3.8185 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9032 -0.5279 4.4375 29 1 1.4497 -1.4979 -1.4100 30 1 2.7588 1.0462 -2.1183 31 1 1.0871 0.6163 -2.5525 32 1 0.6349 -1.1110 -4.1969 33 1 1.4606 -2.3357 -6.1672 34 1 2.1652 -2.4324 -8.0629 35 1 3.1996 -3.7704 -8.6186 36 1 2.2947 -3.9194 -7.0934 37 1 5.6196 -1.2395 -7.3547 38 1 5.1408 -2.2049 -8.7717 39 1 4.1068 -0.8674 -8.2156 40 1 5.4662 -1.2994 -5.1325 41 1 4.6413 -0.0831 -3.1569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:44 Heat of formation + Delta-G solvation = 49.435002 kcal Electronic energy + Delta-G solvation = -19927.180398 eV Core-core repulsion = 16999.880433 eV Total energy + Delta-G solvation = -2927.299965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12160 -37.66977 -36.18975 -34.92958 -32.59647 -31.11153 -30.94506 -28.50742 -27.79378 -25.31962 -24.80354 -23.36918 -22.27074 -20.82113 -20.23320 -17.85943 -16.87466 -16.22239 -15.49296 -15.20127 -14.81117 -14.48301 -14.18915 -13.97801 -13.86967 -13.62743 -13.45427 -13.14559 -12.78965 -12.56809 -12.47723 -12.39426 -12.29073 -11.97283 -11.95682 -11.83081 -11.61291 -11.37478 -11.07014 -10.88481 -10.74706 -10.39860 -10.13621 -9.55072 -9.17463 -8.87120 -8.63508 -8.54917 -7.45022 -6.04382 -4.02016 1.25821 1.45548 2.57882 2.60893 3.24659 3.33957 3.37629 3.52022 3.89913 4.31716 4.39750 4.47055 4.58173 4.92766 4.98863 5.01353 5.18452 5.24851 5.30146 5.33140 5.34818 5.38677 5.53342 5.56511 5.67720 5.73975 5.85165 5.88960 6.07737 6.12669 6.17986 6.28014 6.42333 6.48047 6.49995 6.68675 6.80231 7.00733 7.09277 7.37624 7.69213 7.88058 8.28342 8.68925 9.07534 9.57777 11.09204 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.033757 B = 0.003411 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.267482 B = 8205.740281 C = 8524.849982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.666 5.666 13 C 0.090 3.910 14 C -0.060 4.060 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.096 4.096 18 C 0.081 3.919 19 C -0.144 4.144 20 C -0.138 4.138 21 C 0.216 3.784 22 N -0.430 5.430 23 C -0.108 4.108 24 C -0.094 4.094 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 1.536 -24.736 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.295 5.295 13 C -0.039 4.039 14 C -0.060 4.060 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.097 4.097 18 C 0.078 3.922 19 C -0.202 4.202 20 C -0.196 4.196 21 C -0.103 4.103 22 N -0.104 5.104 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.990 0.352 -23.846 23.870 hybrid contribution -1.870 1.180 0.100 2.214 sum -0.881 1.532 -23.747 23.812 Atomic orbital electron populations 1.22864 1.01503 1.00926 0.98890 1.19670 0.88567 0.95132 0.89258 0.94784 1.20981 1.31224 1.13796 0.87714 0.90042 1.24951 0.96008 0.96630 0.95867 1.69891 1.45903 1.40312 0.97837 0.86885 0.80565 0.83925 0.76883 1.20796 1.22423 1.19483 1.60678 1.58143 1.08553 1.02153 1.20985 0.98782 0.95321 0.88830 1.20074 0.93565 0.96976 0.95430 1.21067 0.99620 0.97903 0.94776 1.21026 0.94467 0.99437 0.97767 1.19299 0.93998 1.00462 0.95964 1.17055 0.92255 0.88640 0.94258 1.21987 0.96343 1.01855 1.00051 1.21920 1.00669 0.98544 0.98492 1.29049 0.93794 0.94052 0.93381 1.81272 1.10078 1.10775 1.08251 1.20944 0.99064 0.97730 0.94851 1.21060 0.95308 0.98620 0.96265 0.92697 0.93600 0.95493 0.92684 0.85045 0.90598 0.95255 0.86061 0.85443 0.89956 0.91431 0.91185 0.91427 0.91484 0.90151 0.86426 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 8.64 37.16 0.32 -3.53 16 2 C 0.18 4.23 2.17 -68.86 -0.15 4.08 16 3 H 0.03 0.82 6.86 -51.93 -0.36 0.46 16 4 C -0.50 -14.08 9.42 -34.44 -0.32 -14.40 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.89 21.81 24.37 -169.99 -4.14 17.67 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.67 -13.25 6.22 -109.22 -0.68 -13.93 16 13 C 0.09 1.44 5.61 -4.97 -0.03 1.41 16 14 C -0.06 -0.83 5.39 -104.62 -0.56 -1.39 16 15 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 16 C -0.11 -1.07 8.98 -39.58 -0.36 -1.43 16 17 C -0.10 -0.96 4.74 -104.63 -0.50 -1.45 16 18 C 0.08 0.64 0.79 -158.45 -0.12 0.52 16 19 C -0.14 -0.81 7.09 37.16 0.26 -0.55 16 20 C -0.14 -0.80 8.24 37.16 0.31 -0.49 16 21 C 0.22 2.41 13.47 -20.72 -0.28 2.14 16 22 N -0.43 -6.08 18.55 42.20 0.78 -5.30 16 23 C -0.11 -1.23 8.81 -39.58 -0.35 -1.58 16 24 C -0.09 -1.24 9.70 -39.58 -0.38 -1.63 16 25 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 26 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 27 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.33 6.33 8.46 -39.29 -0.33 6.00 16 30 H 0.08 1.23 8.00 -51.94 -0.42 0.81 16 31 H 0.03 0.44 7.38 -51.93 -0.38 0.06 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.13 0.91 5.90 -52.48 -0.31 0.60 16 34 H 0.08 0.33 7.53 -51.93 -0.39 -0.06 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.43 7.50 -51.93 -0.39 0.04 16 37 H 0.07 0.42 7.39 -51.93 -0.38 0.03 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 1.20 7.57 -52.49 -0.40 0.80 16 41 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -32.41 334.12 -6.93 -39.34 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.05 Total: 2.39 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.64 Total: -18.21 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.88 Total: -46.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.41 -6.93 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.772 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds