Wall clock time and date at job start Mon Mar 30 2020 19:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00403 * 2 1 4 4 H 1.07997 * 120.00241 * 203.04817 * 3 2 1 5 5 C 1.38819 * 119.99862 * 23.04137 * 3 2 1 6 6 N 1.31619 * 119.99534 * 12.93978 * 5 3 2 7 7 Si 1.86795 * 120.00308 * 192.94243 * 5 3 2 8 8 H 1.48503 * 109.46783 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47469 * 119.99554 * 7 5 3 10 10 H 1.48496 * 109.47060 * 240.00447 * 7 5 3 11 11 C 1.46500 * 119.99993 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47000 * 90.00199 * 11 2 1 13 13 N 1.46506 * 109.47306 * 179.97438 * 12 11 2 14 14 C 1.34770 * 119.99995 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99759 * 179.97438 * 14 13 12 17 17 F 1.39896 * 109.47666 * 310.00206 * 16 14 13 18 18 C 1.53001 * 109.46977 * 70.00510 * 16 14 13 19 19 C 1.52998 * 109.47327 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.47429 * 300.00410 * 19 18 16 21 21 C 1.52992 * 109.47301 * 59.99376 * 20 19 18 22 22 C 1.53002 * 109.46906 * 190.00099 * 16 14 13 23 23 H 1.09001 * 109.47584 * 275.13006 * 1 2 3 24 24 H 1.09007 * 109.47042 * 35.12256 * 1 2 3 25 25 H 1.08998 * 109.47253 * 155.12178 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47075 * 330.00451 * 11 2 1 28 28 H 1.09003 * 109.47076 * 210.00045 * 11 2 1 29 29 H 1.09011 * 109.47343 * 60.00142 * 12 11 2 30 30 H 1.08995 * 109.47162 * 300.00173 * 12 11 2 31 31 H 0.96999 * 119.99630 * 0.02562 * 13 12 11 32 32 H 1.09005 * 109.47244 * 59.99903 * 18 16 14 33 33 H 1.09000 * 109.46692 * 299.99985 * 18 16 14 34 34 H 1.09000 * 109.47127 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.46625 * 60.00028 * 19 18 16 36 36 H 1.09002 * 109.47235 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46406 * 299.99593 * 20 19 18 38 38 H 1.09005 * 109.47083 * 60.00179 * 21 20 19 39 39 H 1.09004 * 109.47450 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47449 * 60.00798 * 22 16 14 41 41 H 1.08999 * 109.47384 * 299.99762 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3402 0.4705 6 7 0.4119 2.2597 1.1459 7 14 2.3157 4.0074 0.1452 8 1 3.5698 3.8263 -0.6292 9 1 1.3715 4.8507 -0.6309 10 1 2.6242 4.6704 1.4377 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1855 -2.9795 -1.4412 14 6 3.5221 -3.5637 -2.6081 15 8 3.2185 -3.0391 -3.6587 16 6 4.2766 -4.8682 -2.6076 17 9 5.3853 -4.7654 -1.7606 18 6 3.3589 -5.9879 -2.1128 19 6 4.1247 -7.3125 -2.1128 20 6 4.5956 -7.6294 -3.5336 21 6 5.5133 -6.5097 -4.0284 22 6 4.7479 -5.1853 -4.0283 23 1 -0.3634 0.0919 1.0235 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0153 3.0663 1.4744 27 1 1.6083 -2.0281 0.5146 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9515 -1.9559 30 1 1.5001 -1.8415 -1.9555 31 1 3.4280 -3.3991 -0.6010 32 1 2.4951 -6.0681 -2.7728 33 1 3.0232 -5.7619 -1.1007 34 1 3.4710 -8.1101 -1.7598 35 1 4.9887 -7.2325 -1.4530 36 1 5.1408 -8.5733 -3.5336 37 1 3.7316 -7.7093 -4.1933 38 1 6.3773 -6.4298 -3.3686 39 1 5.8484 -6.7352 -5.0408 40 1 5.4017 -4.3877 -4.3808 41 1 3.8841 -5.2656 -4.6882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663307841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:48 Heat of formation + Delta-G solvation = -84.353591 kcal Electronic energy + Delta-G solvation = -21505.006099 eV Core-core repulsion = 18141.135400 eV Total energy + Delta-G solvation = -3363.870699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.03733 -39.67760 -37.58181 -36.08810 -34.27372 -31.60215 -31.10796 -30.83381 -28.12196 -25.88211 -24.37074 -23.13903 -22.70429 -20.74123 -20.45090 -19.74798 -17.76852 -16.70144 -16.52439 -16.03545 -15.36121 -15.04674 -14.78178 -14.71639 -14.28884 -13.88788 -13.71380 -13.52637 -13.23087 -12.74584 -12.60626 -12.48126 -12.38361 -12.30892 -12.05176 -11.37465 -11.20981 -10.97102 -10.92547 -10.88902 -10.87206 -10.61618 -10.36887 -10.35661 -9.95626 -9.93990 -9.59261 -8.80939 -8.58200 -6.81673 -5.75770 -3.24053 2.53931 3.13014 3.37654 3.45074 3.47776 4.11505 4.20386 4.40075 4.44030 4.53688 4.77164 4.82316 4.97170 5.03749 5.15943 5.27878 5.37793 5.45819 5.59787 5.63638 5.72744 5.73666 5.77586 5.82277 5.84933 5.91630 5.96105 6.13040 6.21612 6.50963 6.61161 6.72528 6.83002 7.34201 7.58847 7.69298 7.79175 8.22084 8.36167 9.19622 9.81745 10.29697 11.29087 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.003501 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.310876 B = 7996.156135 C = 8272.563211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.143 3.857 12 C 0.092 3.908 13 N -0.711 5.711 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.110 3.890 17 F -0.194 7.194 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.123 4.123 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.253 0.747 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.400 0.600 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -20.359 -6.447 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.362 5.362 14 C 0.277 3.723 15 O -0.405 6.405 16 C 0.088 3.912 17 F -0.174 7.174 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.162 4.162 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.764 -19.776 -7.081 22.068 hybrid contribution 0.477 0.891 0.344 1.068 sum 7.241 -18.885 -6.737 21.318 Atomic orbital electron populations 1.20841 0.82286 0.95590 0.99648 1.43794 1.01958 1.00298 1.85924 1.19249 0.98404 0.85490 1.35840 0.91251 1.25036 0.97816 0.98647 0.97966 1.70083 1.19384 1.27215 1.38385 0.86163 0.78657 0.84086 0.77522 1.20222 1.21513 1.21656 1.20839 0.96856 0.89233 0.91602 1.22518 0.95593 0.82812 1.02398 1.46095 1.57062 1.25020 1.07998 1.20754 0.80679 0.86176 0.84737 1.90726 1.54665 1.63945 1.31142 1.21208 0.84077 0.94390 0.91484 1.92877 1.54757 1.97098 1.72702 1.22120 0.98374 0.94043 1.02986 1.21512 1.00456 0.96019 0.97639 1.21589 0.99655 0.98353 0.96423 1.21550 0.98623 0.93796 1.01907 1.21887 1.02173 0.98592 0.93508 0.94826 0.93914 0.98278 0.93724 0.94031 0.92825 0.91361 0.91995 0.76630 0.89512 0.90130 0.91054 0.91054 0.91570 0.91686 0.91257 0.91127 0.90208 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.98 59.84 0.54 4.50 16 2 N -0.60 -15.02 2.92 -181.12 -0.53 -15.54 16 3 C -0.26 -7.20 9.65 -15.06 -0.15 -7.35 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.45 10.71 55.49 0.59 -25.85 16 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.01 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.14 2.85 5.76 -4.04 -0.02 2.83 16 12 C 0.09 1.71 6.00 -4.04 -0.02 1.68 16 13 N -0.71 -10.65 5.53 -60.29 -0.33 -10.98 16 14 C 0.49 7.58 6.79 -10.99 -0.07 7.51 16 15 O -0.53 -10.00 15.98 5.55 0.09 -9.91 16 16 C 0.11 1.29 1.05 -91.77 -0.10 1.19 16 17 F -0.19 -2.41 15.70 2.25 0.04 -2.37 16 18 C -0.14 -1.26 4.98 -26.73 -0.13 -1.39 16 19 C -0.12 -0.89 5.80 -26.73 -0.16 -1.05 16 20 C -0.12 -0.87 5.92 -26.74 -0.16 -1.03 16 21 C -0.12 -1.00 5.80 -26.75 -0.16 -1.16 16 22 C -0.12 -1.33 4.35 -26.75 -0.12 -1.44 16 23 H 0.03 0.89 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.13 7.34 -51.92 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 29 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 4.94 8.44 -40.82 -0.34 4.60 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.56 7.80 -51.93 -0.41 0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.97 7.99 -51.93 -0.41 0.55 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -31.54 332.24 -7.74 -39.28 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.94 Total: -0.94 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.63 Total: 4.32 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.27 Total: -52.38 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.54 -7.74 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663307841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.075 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds