Wall clock time and date at job start Mon Mar 30 2020 19:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00403 * 2 1 4 4 H 1.07997 * 120.00241 * 203.04817 * 3 2 1 5 5 C 1.38819 * 119.99862 * 23.04137 * 3 2 1 6 6 N 1.31619 * 119.99534 * 12.93978 * 5 3 2 7 7 Si 1.86795 * 120.00308 * 192.94243 * 5 3 2 8 8 H 1.48503 * 109.46783 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47469 * 119.99554 * 7 5 3 10 10 H 1.48496 * 109.47060 * 240.00447 * 7 5 3 11 11 C 1.46500 * 119.99993 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47000 * 90.00199 * 11 2 1 13 13 N 1.46506 * 109.47306 * 179.97438 * 12 11 2 14 14 C 1.34770 * 119.99995 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99759 * 179.97438 * 14 13 12 17 17 F 1.39896 * 109.47666 * 310.00206 * 16 14 13 18 18 C 1.53001 * 109.46977 * 70.00510 * 16 14 13 19 19 C 1.52998 * 109.47327 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.47429 * 300.00410 * 19 18 16 21 21 C 1.52992 * 109.47301 * 59.99376 * 20 19 18 22 22 C 1.53002 * 109.46906 * 190.00099 * 16 14 13 23 23 H 1.09001 * 109.47584 * 275.13006 * 1 2 3 24 24 H 1.09007 * 109.47042 * 35.12256 * 1 2 3 25 25 H 1.08998 * 109.47253 * 155.12178 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47075 * 330.00451 * 11 2 1 28 28 H 1.09003 * 109.47076 * 210.00045 * 11 2 1 29 29 H 1.09011 * 109.47343 * 60.00142 * 12 11 2 30 30 H 1.08995 * 109.47162 * 300.00173 * 12 11 2 31 31 H 0.96999 * 119.99630 * 0.02562 * 13 12 11 32 32 H 1.09005 * 109.47244 * 59.99903 * 18 16 14 33 33 H 1.09000 * 109.46692 * 299.99985 * 18 16 14 34 34 H 1.09000 * 109.47127 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.46625 * 60.00028 * 19 18 16 36 36 H 1.09002 * 109.47235 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46406 * 299.99593 * 20 19 18 38 38 H 1.09005 * 109.47083 * 60.00179 * 21 20 19 39 39 H 1.09004 * 109.47450 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47449 * 60.00798 * 22 16 14 41 41 H 1.08999 * 109.47384 * 299.99762 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3402 0.4705 6 7 0.4119 2.2597 1.1459 7 14 2.3157 4.0074 0.1452 8 1 3.5698 3.8263 -0.6292 9 1 1.3715 4.8507 -0.6309 10 1 2.6242 4.6704 1.4377 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1855 -2.9795 -1.4412 14 6 3.5221 -3.5637 -2.6081 15 8 3.2185 -3.0391 -3.6587 16 6 4.2766 -4.8682 -2.6076 17 9 5.3853 -4.7654 -1.7606 18 6 3.3589 -5.9879 -2.1128 19 6 4.1247 -7.3125 -2.1128 20 6 4.5956 -7.6294 -3.5336 21 6 5.5133 -6.5097 -4.0284 22 6 4.7479 -5.1853 -4.0283 23 1 -0.3634 0.0919 1.0235 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0153 3.0663 1.4744 27 1 1.6083 -2.0281 0.5146 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9515 -1.9559 30 1 1.5001 -1.8415 -1.9555 31 1 3.4280 -3.3991 -0.6010 32 1 2.4951 -6.0681 -2.7728 33 1 3.0232 -5.7619 -1.1007 34 1 3.4710 -8.1101 -1.7598 35 1 4.9887 -7.2325 -1.4530 36 1 5.1408 -8.5733 -3.5336 37 1 3.7316 -7.7093 -4.1933 38 1 6.3773 -6.4298 -3.3686 39 1 5.8484 -6.7352 -5.0408 40 1 5.4017 -4.3877 -4.3808 41 1 3.8841 -5.2656 -4.6882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663307841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:48 Heat of formation + Delta-G solvation = -103.970028 kcal Electronic energy + Delta-G solvation = -21505.856732 eV Core-core repulsion = 18141.135400 eV Total energy + Delta-G solvation = -3364.721331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.02198 -40.92415 -38.43696 -37.81001 -35.85454 -33.39039 -31.97060 -31.77738 -29.71182 -27.94342 -25.73363 -24.19340 -23.70671 -22.44379 -21.57659 -20.61974 -19.03338 -18.61295 -17.64121 -17.16896 -16.80086 -16.29651 -16.20879 -15.68962 -15.58912 -15.38073 -15.05116 -14.51689 -14.45185 -14.32482 -14.15782 -13.62127 -13.28129 -13.19854 -13.09730 -12.85993 -12.81335 -12.71579 -12.51478 -12.18766 -12.09403 -12.00096 -11.82264 -11.71589 -11.48934 -11.07441 -10.82301 -10.66120 -10.21308 -8.86530 -7.87618 -5.38232 1.30076 1.44127 1.46191 1.56350 1.89871 2.49199 3.18224 3.26490 3.36146 3.48167 3.61389 3.79265 4.09792 4.13277 4.16100 4.20649 4.28760 4.35732 4.46582 4.59844 4.61178 4.79242 4.82349 4.96521 4.99372 5.02767 5.05008 5.15079 5.16277 5.24879 5.29406 5.30286 5.38590 5.50662 5.59923 5.67948 6.28366 6.35326 6.99836 7.10507 7.80222 8.22734 9.15546 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.003501 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.310876 B = 7996.156135 C = 8272.563211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.270 4.270 4 H 0.068 0.932 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.270 1.270 9 H -0.290 1.290 10 H -0.288 1.288 11 C 0.146 3.854 12 C 0.113 3.887 13 N -0.702 5.702 14 C 0.490 3.510 15 O -0.568 6.568 16 C 0.117 3.883 17 F -0.196 7.196 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.125 4.125 23 H 0.012 0.988 24 H 0.014 0.986 25 H 0.033 0.967 26 H 0.250 0.750 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.415 0.585 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 -22.388 -6.480 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.400 4.400 4 H 0.086 0.914 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.796 3.204 8 H -0.194 1.194 9 H -0.217 1.217 10 H -0.214 1.214 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.353 5.353 14 C 0.274 3.726 15 O -0.447 6.447 16 C 0.095 3.905 17 F -0.177 7.177 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.163 4.163 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.252 0.748 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.638 -21.857 -7.099 24.217 hybrid contribution 0.241 1.470 0.329 1.525 sum 7.879 -20.387 -6.771 22.881 Atomic orbital electron populations 1.20607 0.82390 0.96084 0.98043 1.44023 1.02319 1.01446 1.86133 1.19528 0.98514 0.86858 1.35122 0.91382 1.25779 0.98548 1.01848 0.98254 1.70223 1.20623 1.27719 1.39501 0.85195 0.77948 0.79993 0.77247 1.19419 1.21702 1.21446 1.20944 0.96889 0.87810 0.92419 1.21965 0.94949 0.83652 1.00765 1.45911 1.56573 1.23832 1.09005 1.21492 0.80118 0.87054 0.83897 1.90707 1.56228 1.65238 1.32510 1.21225 0.84060 0.92915 0.92288 1.92875 1.54933 1.97050 1.72845 1.22185 0.98019 0.93826 1.03351 1.21533 1.00489 0.95350 0.97952 1.21614 0.99730 0.98430 0.96160 1.21550 0.98383 0.92701 1.02796 1.21922 1.02074 0.99638 0.92694 0.96967 0.96751 0.94865 0.94083 0.91382 0.92511 0.94270 0.92988 0.74807 0.89195 0.89302 0.89159 0.91291 0.89877 0.91213 0.91574 0.89857 0.91937 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.57 8.98 127.77 1.15 9.72 16 2 N -0.62 -30.86 2.92 -726.95 -2.12 -32.99 16 3 C -0.27 -15.00 9.65 84.03 0.81 -14.19 16 4 H 0.07 3.71 7.86 -2.91 -0.02 3.69 16 5 C -0.05 -2.75 5.10 84.86 0.43 -2.32 16 6 N -0.93 -55.29 10.71 21.65 0.23 -55.06 16 7 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 8 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 C 0.15 5.65 5.76 86.38 0.50 6.15 16 12 C 0.11 4.13 6.00 86.38 0.52 4.65 16 13 N -0.70 -20.21 5.53 -463.05 -2.56 -22.77 16 14 C 0.49 14.72 6.79 87.66 0.60 15.32 16 15 O -0.57 -21.67 15.98 -3.04 -0.05 -21.71 16 16 C 0.12 2.58 1.05 -11.54 -0.01 2.56 16 17 F -0.20 -4.57 15.70 44.97 0.71 -3.86 16 18 C -0.14 -2.16 4.98 30.59 0.15 -2.01 16 19 C -0.12 -1.38 5.80 30.59 0.18 -1.20 16 20 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 21 C -0.12 -1.69 5.80 30.58 0.18 -1.51 16 22 C -0.13 -2.58 4.35 30.58 0.13 -2.44 16 23 H 0.01 0.64 7.34 -2.39 -0.02 0.63 16 24 H 0.01 0.75 7.34 -2.38 -0.02 0.73 16 25 H 0.03 1.37 8.03 -2.39 -0.02 1.36 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 28 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.42 9.43 8.44 -92.71 -0.78 8.64 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.88 7.80 -2.38 -0.02 0.86 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.01 7.80 -2.38 -0.02 0.99 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.82 7.99 -2.39 -0.02 1.80 16 Total: -1.00 -68.13 332.24 3.27 -64.87 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.22 Total: 10.33 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.81 Total: 13.54 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.45 Total: -110.81 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.71 Total: -3.86 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.13 3.27 -64.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663307841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.101 kcal (2) G-P(sol) polarization free energy of solvation -68.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds