Wall clock time and date at job start Mon Mar 30 2020 19:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47129 * 2 1 4 4 C 1.36937 * 120.00049 * 267.42855 * 3 2 1 5 5 H 1.08003 * 120.00181 * 145.29695 * 4 3 2 6 6 C 1.38809 * 119.99688 * 325.29245 * 4 3 2 7 7 N 1.31616 * 120.00540 * 341.68380 * 6 4 3 8 8 Si 1.86806 * 119.99798 * 161.68119 * 6 4 3 9 9 H 1.48497 * 109.47248 * 90.00199 * 8 6 4 10 10 H 1.48504 * 109.47056 * 210.00170 * 8 6 4 11 11 H 1.48498 * 109.46934 * 329.99840 * 8 6 4 12 12 C 1.46501 * 119.99691 * 87.42249 * 3 2 1 13 13 C 1.52998 * 109.46903 * 90.00533 * 12 3 2 14 14 N 1.46501 * 109.47047 * 179.97438 * 13 12 3 15 15 C 1.34775 * 120.00030 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00351 * 356.77650 * 15 14 13 17 17 C 1.50702 * 120.00040 * 177.04839 * 15 14 13 18 18 C 1.52997 * 115.55051 * 297.77593 * 17 15 14 19 19 C 1.53000 * 109.47308 * 297.73639 * 18 17 15 20 20 F 1.39893 * 109.47417 * 176.33163 * 19 18 17 21 21 C 1.52999 * 117.49982 * 152.10198 * 17 15 14 22 22 C 1.53002 * 117.49523 * 83.44212 * 17 15 14 23 23 H 1.08991 * 109.47194 * 299.99963 * 1 2 3 24 24 H 1.09004 * 109.47037 * 60.00181 * 1 2 3 25 25 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47502 * 240.00264 * 2 1 3 27 27 H 1.08995 * 109.46811 * 119.99905 * 2 1 3 28 28 H 0.96995 * 120.00385 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47220 * 329.99994 * 12 3 2 30 30 H 1.09003 * 109.46708 * 210.00196 * 12 3 2 31 31 H 1.09001 * 109.47117 * 59.99846 * 13 12 3 32 32 H 1.09003 * 109.47163 * 299.99384 * 13 12 3 33 33 H 0.97002 * 120.00152 * 359.97438 * 14 13 12 34 34 H 1.08997 * 109.47526 * 57.74046 * 18 17 15 35 35 H 1.09007 * 109.47023 * 177.73866 * 18 17 15 36 36 H 1.09001 * 109.46903 * 296.33648 * 19 18 17 37 37 H 1.09004 * 109.46964 * 56.32959 * 19 18 17 38 38 H 1.08998 * 117.49700 * 0.02562 * 21 17 15 39 39 H 1.09000 * 117.50097 * 145.02082 * 21 17 15 40 40 H 1.09001 * 117.49684 * 214.97919 * 22 17 15 41 41 H 1.08999 * 117.50064 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2968 2.0090 -1.1847 5 1 2.1107 3.0675 -1.2917 6 6 2.8182 1.2850 -2.2480 7 7 3.3779 0.1130 -2.0347 8 14 2.7253 1.9739 -3.9819 9 1 3.9402 2.7816 -4.2594 10 1 2.6416 0.8554 -4.9552 11 1 1.5203 2.8323 -4.1096 12 6 2.2087 2.0908 1.2675 13 6 3.6336 1.8576 1.7735 14 7 3.8242 2.5676 3.0407 15 6 5.0110 2.5051 3.6763 16 8 5.9023 1.8142 3.2301 17 6 5.2285 3.2888 4.9450 18 6 5.1243 4.8090 4.8076 19 6 6.2101 5.3105 3.8534 20 9 6.0629 6.6885 3.6623 21 6 6.2416 2.7382 5.9506 22 6 4.7431 2.6628 6.2540 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7426 -0.3927 -2.7777 29 1 1.4962 1.7179 2.0032 30 1 2.0477 3.1579 1.1142 31 1 4.3461 2.2305 1.0377 32 1 3.7946 0.7904 1.9268 33 1 3.0962 3.0828 3.4222 34 1 4.1433 5.0717 4.4118 35 1 5.2576 5.2722 5.7853 36 1 7.1919 5.1057 4.2804 37 1 6.1167 4.7988 2.8955 38 1 6.7511 1.8093 5.6944 39 1 6.8336 3.4589 6.5146 40 1 4.3499 3.3342 7.0174 41 1 4.2661 1.6844 6.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663406916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:53 Heat of formation + Delta-G solvation = -57.230020 kcal Electronic energy + Delta-G solvation = -21328.852441 eV Core-core repulsion = 17966.157908 eV Total energy + Delta-G solvation = -3362.694533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.67520 -40.03678 -37.07944 -36.16186 -34.25603 -31.56187 -31.35498 -30.02723 -27.54411 -24.75799 -23.83355 -22.98646 -22.55092 -21.74470 -20.14175 -19.17589 -17.13998 -16.63105 -16.32274 -15.96545 -15.58941 -15.12443 -14.83822 -14.73464 -14.44717 -14.13558 -13.72630 -13.35857 -12.95141 -12.81444 -12.37314 -12.24525 -12.05397 -11.76194 -11.68908 -11.28873 -11.13279 -10.95237 -10.85555 -10.70134 -10.66849 -10.49693 -10.22904 -10.01919 -9.93220 -9.62575 -9.52560 -8.62240 -8.52546 -6.66704 -5.79398 -3.39642 2.73937 3.29300 3.35771 3.42741 3.44999 3.55077 4.19667 4.45781 4.50738 4.57078 4.75062 4.81052 4.96165 5.08502 5.23152 5.31680 5.39396 5.52686 5.58316 5.64545 5.73212 5.86319 5.91639 5.93965 6.01057 6.27909 6.32084 6.53447 6.63961 6.72881 6.78163 6.85679 7.03206 7.26358 7.73620 7.81415 7.84124 8.47320 8.51392 9.15612 9.77237 10.32256 11.19624 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.004413 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.729748 B = 6343.782533 C = 7067.535459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 N -0.578 5.578 4 C -0.260 4.260 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.140 3.860 13 C 0.097 3.903 14 N -0.718 5.718 15 C 0.539 3.461 16 O -0.537 6.537 17 C -0.162 4.162 18 C -0.105 4.105 19 C 0.061 3.939 20 F -0.219 7.219 21 C -0.145 4.145 22 C -0.153 4.153 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.107 0.893 27 H 0.019 0.981 28 H 0.256 0.744 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 6.450 15.913 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 N -0.299 5.299 4 C -0.389 4.389 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.012 3.988 13 C -0.028 4.028 14 N -0.369 5.369 15 C 0.324 3.676 16 O -0.414 6.414 17 C -0.165 4.165 18 C -0.143 4.143 19 C 0.006 3.994 20 F -0.200 7.200 21 C -0.183 4.183 22 C -0.191 4.191 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.540 5.843 15.392 16.536 hybrid contribution -0.322 0.554 -0.755 0.990 sum 1.218 6.398 14.638 16.021 Atomic orbital electron populations 1.22287 1.00834 0.98681 1.00298 1.21098 0.89847 0.86191 1.02259 1.43851 1.73813 1.12066 1.00159 1.19093 1.36729 0.94183 0.88939 0.91935 1.25176 0.97044 0.97508 0.99346 1.69875 1.38469 1.14198 1.30601 0.86326 0.78071 0.78171 0.84379 1.21222 1.21447 1.20331 1.21075 0.91509 0.96906 0.89333 1.22494 1.01602 0.96339 0.82357 1.46187 1.13406 1.52307 1.24975 1.19425 0.82783 0.81424 0.84001 1.90724 1.42956 1.40846 1.66847 1.21414 1.09297 0.94765 0.91055 1.21611 1.00338 0.91331 1.01054 1.21961 1.00080 0.76176 1.01203 1.92758 1.97253 1.33262 1.96748 1.23031 0.92151 1.03534 0.99557 1.23076 0.97789 1.02458 0.95742 0.95061 0.93224 0.94690 0.87614 0.96240 0.93392 0.94265 0.93423 0.91171 0.92209 0.77182 0.89790 0.89857 0.90458 0.90453 0.87542 0.87959 0.87793 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.24 37.16 0.38 -2.85 16 2 C 0.13 3.08 5.98 -4.04 -0.02 3.05 16 3 N -0.58 -13.97 2.45 -173.24 -0.42 -14.39 16 4 C -0.26 -6.93 9.51 -15.06 -0.14 -7.07 16 5 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 6 C 0.01 0.25 5.04 -17.43 -0.09 0.16 16 7 N -0.89 -25.37 11.10 55.49 0.62 -24.75 16 8 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 C 0.14 2.75 5.79 -4.04 -0.02 2.73 16 13 C 0.10 1.92 6.00 -4.04 -0.02 1.90 16 14 N -0.72 -10.93 5.55 -60.29 -0.33 -11.26 16 15 C 0.54 8.45 6.29 -10.99 -0.07 8.38 16 16 O -0.54 -10.92 16.61 5.56 0.09 -10.83 16 17 C -0.16 -1.77 1.94 -155.66 -0.30 -2.07 16 18 C -0.11 -1.00 5.55 -26.73 -0.15 -1.14 16 19 C 0.06 0.68 7.45 37.16 0.28 0.96 16 20 F -0.22 -2.84 17.36 2.25 0.04 -2.80 16 21 C -0.15 -1.41 9.77 -26.69 -0.26 -1.67 16 22 C -0.15 -1.33 9.94 -26.69 -0.27 -1.60 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.11 2.82 5.19 -51.93 -0.27 2.55 16 27 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.40 4.73 8.47 -40.82 -0.35 4.39 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.02 7.51 -51.93 -0.39 0.63 16 38 H 0.11 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -31.09 346.54 -7.38 -38.47 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.87 Total: 3.16 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.69 Total: 0.78 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.14 Total: -50.41 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -7.38 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663406916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds