Wall clock time and date at job start Mon Mar 30 2020 20:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47400 * 2 1 4 4 C 1.34778 * 120.00385 * 259.20166 * 3 2 1 5 5 O 1.21281 * 120.00601 * 179.80588 * 4 3 2 6 6 C 1.50703 * 119.99602 * 359.80819 * 4 3 2 7 7 C 1.53007 * 109.47283 * 67.19675 * 6 4 3 8 8 C 1.53003 * 109.47108 * 187.19766 * 6 4 3 9 9 F 1.39898 * 109.47518 * 307.19514 * 6 4 3 10 10 C 1.46502 * 120.00219 * 79.20612 * 3 2 1 11 11 H 1.09004 * 110.91439 * 12.27347 * 10 3 2 12 12 C 1.55161 * 111.00118 * 248.37959 * 10 3 2 13 13 C 1.54329 * 102.93998 * 277.42253 * 12 10 3 14 14 N 1.47026 * 107.26877 * 337.80858 * 13 12 10 15 15 C 1.36942 * 125.64616 * 178.97601 * 14 13 12 16 16 H 1.07999 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99649 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00326 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99593 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46969 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46929 * 120.00108 * 19 17 15 22 22 H 1.48502 * 109.46901 * 239.99999 * 19 17 15 23 23 C 1.47423 * 108.70426 * 358.94109 * 14 13 12 24 24 H 1.09002 * 109.47150 * 50.92133 * 1 2 3 25 25 H 1.08995 * 109.47620 * 170.92342 * 1 2 3 26 26 H 1.09002 * 109.46903 * 290.92838 * 1 2 3 27 27 H 1.09002 * 109.46663 * 239.99532 * 2 1 3 28 28 H 1.09004 * 109.46932 * 120.00585 * 2 1 3 29 29 H 1.09004 * 109.46950 * 49.87716 * 7 6 4 30 30 H 1.08998 * 109.47082 * 169.87863 * 7 6 4 31 31 H 1.08992 * 109.46927 * 289.88137 * 7 6 4 32 32 H 1.08994 * 109.47119 * 59.99759 * 8 6 4 33 33 H 1.08997 * 109.46924 * 180.02562 * 8 6 4 34 34 H 1.09004 * 109.47168 * 299.99720 * 8 6 4 35 35 H 1.09003 * 110.72109 * 159.06500 * 12 10 3 36 36 H 1.08991 * 110.72300 * 35.78355 * 12 10 3 37 37 H 1.09000 * 109.87975 * 97.22422 * 13 12 10 38 38 H 1.08995 * 109.88119 * 218.39297 * 13 12 10 39 39 H 0.97006 * 120.00081 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.36333 * 142.96491 * 23 14 13 41 41 H 1.08999 * 110.36555 * 265.18021 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4492 1.9436 -1.1465 5 8 2.8503 3.0882 -1.1472 6 6 2.4326 1.1503 -2.4277 7 6 0.9846 0.8741 -2.8379 8 6 3.1319 1.9477 -3.5305 9 9 3.1018 -0.0629 -2.2338 10 6 2.0386 2.1510 1.2463 11 1 1.8693 1.5033 2.1065 12 6 1.0004 3.3033 1.2050 13 6 1.7480 4.4148 0.4386 14 7 3.1869 4.1415 0.5670 15 6 4.1933 4.8856 0.0113 16 1 5.2236 4.6008 0.1652 17 6 3.8891 6.0059 -0.7498 18 7 2.6334 6.3532 -0.9369 19 14 5.2619 7.0213 -1.5072 20 1 6.5740 6.4247 -1.1497 21 1 5.1107 7.0345 -2.9844 22 1 5.1924 8.4117 -0.9900 23 6 3.3669 2.9342 1.3937 24 1 -0.3633 0.6478 -0.7978 25 1 -0.3634 -1.0147 -0.1621 26 1 -0.3633 0.3671 0.9599 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4167 1.8042 -2.8144 30 1 0.9651 0.4618 -3.8467 31 1 0.5406 0.1598 -2.1447 32 1 4.1633 2.1444 -3.2383 33 1 3.1194 1.3741 -4.4572 34 1 2.6105 2.8929 -3.6817 35 1 0.7490 3.6323 2.2133 36 1 0.1053 2.9968 0.6638 37 1 1.4599 4.3985 -0.6125 38 1 1.5149 5.3864 0.8740 39 1 2.4209 7.1359 -1.4691 40 1 4.2011 2.3399 1.0207 41 1 3.5335 3.2090 2.4352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698578564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:34 Heat of formation + Delta-G solvation = -1.385499 kcal Electronic energy + Delta-G solvation = -23925.184823 eV Core-core repulsion = 20564.911890 eV Total energy + Delta-G solvation = -3360.272932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.73406 -39.75245 -36.34092 -35.33759 -33.07240 -31.96674 -30.03028 -28.88953 -27.33888 -26.94102 -24.42383 -23.45840 -22.60439 -20.38070 -19.80365 -18.17647 -17.01726 -16.43388 -16.12476 -15.58406 -15.01431 -14.48412 -14.43739 -14.24404 -13.72018 -13.55774 -12.97922 -12.73982 -12.47221 -12.37261 -12.03582 -11.87861 -11.83264 -11.67358 -11.62076 -11.56959 -11.18106 -10.84709 -10.72757 -10.69032 -10.60974 -10.54093 -9.90977 -9.82729 -9.64578 -9.39043 -8.53867 -8.33630 -7.79431 -6.21287 -5.38896 -2.63323 3.38251 3.45580 3.54580 3.60050 3.61818 4.64025 4.70725 4.74895 4.97103 5.06643 5.15416 5.31759 5.49603 5.54395 5.62170 5.65425 5.74224 5.74609 5.84363 5.89848 5.94465 5.94662 6.01795 6.11216 6.29350 6.32402 6.35214 6.53769 6.58281 6.65369 6.68660 6.81431 7.35149 7.80508 7.92463 8.04318 8.14743 8.57537 9.10448 9.53841 10.15815 10.82255 11.74403 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.008405 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.378542 B = 3330.641323 C = 4033.074042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 N -0.604 5.604 4 C 0.444 3.556 5 O -0.383 6.383 6 C 0.101 3.899 7 C -0.182 4.182 8 C -0.153 4.153 9 F -0.204 7.204 10 C 0.133 3.867 11 H 0.080 0.920 12 C -0.160 4.160 13 C 0.193 3.807 14 N -0.566 5.566 15 C -0.188 4.188 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.898 3.102 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.296 1.296 23 C 0.129 3.871 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.243 0.757 40 H 0.034 0.966 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -14.443 -0.286 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.036 4.036 3 N -0.342 5.342 4 C 0.225 3.775 5 O -0.246 6.246 6 C 0.079 3.921 7 C -0.239 4.239 8 C -0.210 4.210 9 F -0.184 7.184 10 C 0.029 3.971 11 H 0.098 0.902 12 C -0.199 4.199 13 C 0.068 3.932 14 N -0.291 5.291 15 C -0.316 4.316 16 H 0.084 0.916 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.731 3.269 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.224 1.224 23 C 0.002 3.998 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.479 -13.581 -0.434 14.651 hybrid contribution 0.610 0.247 -0.456 0.801 sum -4.869 -13.334 -0.890 14.223 Atomic orbital electron populations 1.22412 0.96817 1.01562 1.02652 1.21883 0.93908 0.83823 1.03972 1.47762 1.65707 1.12871 1.07824 1.20905 0.82126 0.89769 0.84667 1.91610 1.37485 1.13254 1.82299 1.21413 0.93248 0.80724 0.96728 1.22697 0.94289 1.04046 1.02876 1.22093 1.02506 1.00688 0.95763 1.92729 1.82484 1.47137 1.96085 1.22268 0.97856 0.92133 0.84864 0.90184 1.23386 0.97869 0.98016 1.00638 1.21076 0.82528 0.91883 0.97695 1.44142 1.02192 1.26269 1.56527 1.18835 0.86233 1.03025 1.23555 0.91552 1.24546 0.95735 0.98948 1.01087 1.69959 1.15084 1.27321 1.44777 0.86222 0.81473 0.80225 0.78995 1.21031 1.22322 1.22389 1.21761 0.93952 0.89515 0.94597 0.91743 0.92220 0.92510 0.88572 0.91597 0.90283 0.91247 0.89912 0.90832 0.91941 0.89620 0.92180 0.92485 0.92621 0.95258 0.94681 0.94807 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.09 37.16 0.34 -1.54 16 2 C 0.09 1.11 5.46 -4.05 -0.02 1.09 16 3 N -0.60 -10.14 2.57 -163.67 -0.42 -10.56 16 4 C 0.44 8.64 6.24 -10.98 -0.07 8.57 16 5 O -0.38 -9.35 7.91 5.56 0.04 -9.31 16 6 C 0.10 1.61 1.20 -91.77 -0.11 1.50 16 7 C -0.18 -2.31 7.98 37.16 0.30 -2.01 16 8 C -0.15 -2.50 8.23 37.16 0.31 -2.19 16 9 F -0.20 -3.21 14.31 2.25 0.03 -3.18 16 10 C 0.13 2.36 3.75 -65.78 -0.25 2.12 16 11 H 0.08 1.18 7.99 -51.93 -0.41 0.76 16 12 C -0.16 -3.07 6.55 -24.89 -0.16 -3.23 16 13 C 0.19 4.86 4.23 -3.06 -0.01 4.84 16 14 N -0.57 -14.86 1.73 -170.07 -0.29 -15.15 16 15 C -0.19 -5.46 8.76 -15.06 -0.13 -5.59 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -28.18 10.31 55.49 0.57 -27.60 16 19 Si 0.90 23.45 29.55 -169.99 -5.02 18.42 16 20 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 23 C 0.13 2.81 6.17 -2.53 -0.02 2.79 16 24 H 0.06 0.74 6.13 -51.93 -0.32 0.43 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 1.22 4.10 -51.93 -0.21 1.01 16 28 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 30 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.08 0.93 3.81 -51.93 -0.20 0.74 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.58 5.84 -51.93 -0.30 1.27 16 38 H 0.03 0.83 7.50 -51.93 -0.39 0.44 16 39 H 0.24 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -32.79 309.82 -6.79 -39.58 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.44 Total: -2.86 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.07 Total: 5.99 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.14 Total: -53.32 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.04 Total: -9.31 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.03 Total: -3.18 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.79 -6.79 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698578564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.197 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds