Wall clock time and date at job start Mon Mar 30 2020 20:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47400 * 2 1 4 4 C 1.34778 * 120.00385 * 259.20166 * 3 2 1 5 5 O 1.21281 * 120.00601 * 179.80588 * 4 3 2 6 6 C 1.50703 * 119.99602 * 359.80819 * 4 3 2 7 7 C 1.53007 * 109.47283 * 67.19675 * 6 4 3 8 8 C 1.53003 * 109.47108 * 187.19766 * 6 4 3 9 9 F 1.39898 * 109.47518 * 307.19514 * 6 4 3 10 10 C 1.46502 * 120.00219 * 79.20612 * 3 2 1 11 11 H 1.09004 * 110.91439 * 12.27347 * 10 3 2 12 12 C 1.55161 * 111.00118 * 248.37959 * 10 3 2 13 13 C 1.54329 * 102.93998 * 277.42253 * 12 10 3 14 14 N 1.47026 * 107.26877 * 337.80858 * 13 12 10 15 15 C 1.36942 * 125.64616 * 178.97601 * 14 13 12 16 16 H 1.07999 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99649 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00326 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99593 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46969 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46929 * 120.00108 * 19 17 15 22 22 H 1.48502 * 109.46901 * 239.99999 * 19 17 15 23 23 C 1.47423 * 108.70426 * 358.94109 * 14 13 12 24 24 H 1.09002 * 109.47150 * 50.92133 * 1 2 3 25 25 H 1.08995 * 109.47620 * 170.92342 * 1 2 3 26 26 H 1.09002 * 109.46903 * 290.92838 * 1 2 3 27 27 H 1.09002 * 109.46663 * 239.99532 * 2 1 3 28 28 H 1.09004 * 109.46932 * 120.00585 * 2 1 3 29 29 H 1.09004 * 109.46950 * 49.87716 * 7 6 4 30 30 H 1.08998 * 109.47082 * 169.87863 * 7 6 4 31 31 H 1.08992 * 109.46927 * 289.88137 * 7 6 4 32 32 H 1.08994 * 109.47119 * 59.99759 * 8 6 4 33 33 H 1.08997 * 109.46924 * 180.02562 * 8 6 4 34 34 H 1.09004 * 109.47168 * 299.99720 * 8 6 4 35 35 H 1.09003 * 110.72109 * 159.06500 * 12 10 3 36 36 H 1.08991 * 110.72300 * 35.78355 * 12 10 3 37 37 H 1.09000 * 109.87975 * 97.22422 * 13 12 10 38 38 H 1.08995 * 109.88119 * 218.39297 * 13 12 10 39 39 H 0.97006 * 120.00081 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.36333 * 142.96491 * 23 14 13 41 41 H 1.08999 * 110.36555 * 265.18021 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4492 1.9436 -1.1465 5 8 2.8503 3.0882 -1.1472 6 6 2.4326 1.1503 -2.4277 7 6 0.9846 0.8741 -2.8379 8 6 3.1319 1.9477 -3.5305 9 9 3.1018 -0.0629 -2.2338 10 6 2.0386 2.1510 1.2463 11 1 1.8693 1.5033 2.1065 12 6 1.0004 3.3033 1.2050 13 6 1.7480 4.4148 0.4386 14 7 3.1869 4.1415 0.5670 15 6 4.1933 4.8856 0.0113 16 1 5.2236 4.6008 0.1652 17 6 3.8891 6.0059 -0.7498 18 7 2.6334 6.3532 -0.9369 19 14 5.2619 7.0213 -1.5072 20 1 6.5740 6.4247 -1.1497 21 1 5.1107 7.0345 -2.9844 22 1 5.1924 8.4117 -0.9900 23 6 3.3669 2.9342 1.3937 24 1 -0.3633 0.6478 -0.7978 25 1 -0.3634 -1.0147 -0.1621 26 1 -0.3633 0.3671 0.9599 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4167 1.8042 -2.8144 30 1 0.9651 0.4618 -3.8467 31 1 0.5406 0.1598 -2.1447 32 1 4.1633 2.1444 -3.2383 33 1 3.1194 1.3741 -4.4572 34 1 2.6105 2.8929 -3.6817 35 1 0.7490 3.6323 2.2133 36 1 0.1053 2.9968 0.6638 37 1 1.4599 4.3985 -0.6125 38 1 1.5149 5.3864 0.8740 39 1 2.4209 7.1359 -1.4691 40 1 4.2011 2.3399 1.0207 41 1 3.5335 3.2090 2.4352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698578564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:34 Heat of formation + Delta-G solvation = -21.567294 kcal Electronic energy + Delta-G solvation = -23926.059971 eV Core-core repulsion = 20564.911890 eV Total energy + Delta-G solvation = -3361.148081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.01071 -41.26037 -38.02708 -36.73650 -34.58274 -33.74596 -31.42329 -30.66394 -28.86721 -28.31447 -26.41704 -24.85431 -23.71159 -21.95082 -21.66501 -19.59888 -18.77365 -18.07950 -17.45951 -16.91254 -16.66784 -16.32633 -15.93921 -15.65888 -15.51004 -14.80791 -14.38214 -13.96034 -13.71836 -13.69229 -13.64255 -13.35047 -13.24428 -13.15547 -13.06268 -12.89900 -12.83198 -12.73323 -12.42654 -12.18108 -11.96505 -11.95380 -11.76117 -11.64266 -11.37969 -11.31483 -10.53723 -10.04549 -9.34323 -8.26999 -7.62763 -4.85560 1.42342 1.43590 1.52190 1.92893 2.13907 2.59880 3.36659 3.50801 3.55025 3.70107 3.85258 3.86322 4.03343 4.18180 4.23436 4.39367 4.49816 4.56317 4.63080 4.67961 4.69659 4.76230 4.85982 4.90237 4.94687 5.05846 5.10085 5.10153 5.10309 5.18266 5.19538 5.50445 5.54658 5.84527 5.97581 6.05208 6.42182 6.69322 7.33667 7.66012 8.03842 8.67828 9.49037 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.008405 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.378542 B = 3330.641323 C = 4033.074042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 N -0.601 5.601 4 C 0.435 3.565 5 O -0.446 6.446 6 C 0.106 3.894 7 C -0.173 4.173 8 C -0.149 4.149 9 F -0.199 7.199 10 C 0.146 3.854 11 H 0.129 0.871 12 C -0.143 4.143 13 C 0.205 3.795 14 N -0.579 5.579 15 C -0.188 4.188 16 H 0.058 0.942 17 C -0.064 4.064 18 N -0.946 5.946 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.296 1.296 23 C 0.123 3.877 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.018 0.982 38 H -0.017 1.017 39 H 0.234 0.766 40 H 0.020 0.980 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -17.496 0.378 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.040 4.040 3 N -0.337 5.337 4 C 0.218 3.782 5 O -0.314 6.314 6 C 0.084 3.916 7 C -0.230 4.230 8 C -0.207 4.207 9 F -0.180 7.180 10 C 0.041 3.959 11 H 0.147 0.853 12 C -0.183 4.183 13 C 0.080 3.920 14 N -0.304 5.304 15 C -0.318 4.318 16 H 0.076 0.924 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.787 3.213 20 H -0.200 1.200 21 H -0.228 1.228 22 H -0.224 1.224 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.001 0.999 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.434 -16.714 0.265 17.911 hybrid contribution 0.946 1.087 -0.639 1.576 sum -5.488 -15.627 -0.374 16.567 Atomic orbital electron populations 1.22356 0.94821 1.03194 1.02518 1.22176 0.95446 0.81151 1.05178 1.47903 1.64725 1.14377 1.06713 1.21561 0.81037 0.89434 0.86210 1.91590 1.40331 1.15887 1.83586 1.21282 0.95320 0.80326 0.94675 1.22667 0.91370 1.04067 1.04888 1.22046 1.00522 1.00438 0.97691 1.92738 1.82690 1.46548 1.96006 1.22221 0.94386 0.92328 0.86941 0.85315 1.23214 0.97895 0.96289 1.00866 1.20732 0.82959 0.92152 0.96120 1.44272 1.02066 1.27451 1.56574 1.19028 0.86758 1.03089 1.22965 0.92370 1.25201 0.97660 1.00444 1.02332 1.70192 1.16611 1.27389 1.45607 0.85306 0.79597 0.78688 0.77675 1.19999 1.22833 1.22364 1.21959 0.95984 0.88360 0.94034 0.92809 0.89326 0.92140 0.88464 0.89370 0.91516 0.88707 0.87969 0.93572 0.88477 0.91933 0.90102 0.90991 0.96388 0.99851 0.95689 0.96177 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.09 71.98 0.65 -2.19 16 2 C 0.08 1.73 5.46 86.38 0.47 2.20 16 3 N -0.60 -18.76 2.57 -790.13 -2.03 -20.79 16 4 C 0.43 16.76 6.24 87.66 0.55 17.31 16 5 O -0.45 -22.53 7.91 -3.03 -0.02 -22.55 16 6 C 0.11 3.26 1.20 -11.54 -0.01 3.25 16 7 C -0.17 -3.97 7.98 71.98 0.57 -3.39 16 8 C -0.15 -4.92 8.23 71.98 0.59 -4.33 16 9 F -0.20 -5.82 14.31 44.97 0.64 -5.18 16 10 C 0.15 4.77 3.75 46.38 0.17 4.95 16 11 H 0.13 3.08 7.99 -2.38 -0.02 3.06 16 12 C -0.14 -5.27 6.55 31.79 0.21 -5.06 16 13 C 0.21 10.68 4.23 86.73 0.37 11.05 16 14 N -0.58 -31.22 1.73 -691.99 -1.20 -32.42 16 15 C -0.19 -11.37 8.76 84.03 0.74 -10.63 16 16 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 17 C -0.06 -3.97 5.49 84.86 0.47 -3.50 16 18 N -0.95 -60.84 10.31 21.65 0.22 -60.61 16 19 Si 0.96 50.09 29.55 68.60 2.03 52.12 16 20 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 22 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 23 C 0.12 5.26 6.17 86.85 0.54 5.79 16 24 H 0.05 1.03 6.13 -2.39 -0.01 1.02 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 2.08 4.10 -2.39 -0.01 2.07 16 28 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 29 H 0.07 1.72 8.11 -2.38 -0.02 1.71 16 30 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 31 H 0.10 1.93 3.81 -2.39 -0.01 1.92 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 35 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.02 1.08 5.84 -2.39 -0.01 1.06 16 38 H -0.02 -0.99 7.50 -2.39 -0.02 -1.01 16 39 H 0.23 14.78 8.31 -92.70 -0.77 14.01 16 40 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.56 309.82 5.96 -70.60 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.01 Total: 3.40 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 5.31 Total: 15.44 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -3.01 Total: -113.83 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.02 Total: -22.55 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.64 Total: -5.18 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.03 Total: 52.12 kcal Total: -76.56 5.96 -70.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698578564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.032 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds