Wall clock time and date at job start Mon Mar 30 2020 19:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86792 * 120.00146 * 2 1 4 4 H 1.48504 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47447 * 300.00691 * 3 2 1 6 6 H 1.48499 * 109.47168 * 60.00809 * 3 2 1 7 7 C 1.40106 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99298 * 179.97438 * 7 2 1 9 9 C 1.41738 * 120.00394 * 0.02562 * 7 2 1 10 10 O 1.21766 * 119.99659 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00059 * 180.02562 * 9 7 2 12 12 C 1.39485 * 120.00028 * 184.59366 * 11 9 7 13 13 C 1.39274 * 120.00412 * 324.83908 * 12 11 9 14 14 C 1.38173 * 120.20495 * 180.02562 * 13 12 11 15 15 C 1.38057 * 120.22696 * 359.78293 * 14 13 12 16 16 C 1.39775 * 120.01244 * 0.47116 * 15 14 13 17 17 C 1.47760 * 120.10577 * 179.78750 * 16 15 14 18 18 C 1.34925 * 125.27336 * 359.71863 * 17 16 15 19 19 C 1.37866 * 114.70647 * 180.02562 * 18 17 16 20 20 C 1.33723 * 115.06083 * 0.25405 * 19 18 17 21 21 S 1.75856 * 109.76618 * 359.62893 * 20 19 18 22 22 C 1.38688 * 120.01183 * 144.86211 * 12 11 9 23 23 H 0.97002 * 119.99800 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00273 * 4.58126 * 11 9 7 25 25 H 1.07994 * 119.90043 * 0.02562 * 13 12 11 26 26 H 1.08001 * 119.88773 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.99810 * 180.25574 * 15 14 13 28 28 H 1.08003 * 122.65148 * 0.02562 * 18 17 16 29 29 H 1.07990 * 122.47012 * 179.97438 * 19 18 17 30 30 H 1.08004 * 125.11507 * 179.75229 * 20 19 18 31 31 H 1.08004 * 120.10797 * 359.95927 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7006 1.3463 -0.0006 5 1 1.8817 2.3965 -1.2123 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2134 -0.0005 8 1 3.0869 -1.2134 -0.0010 9 6 1.2982 -2.4409 -0.0016 10 8 0.0806 -2.4408 -0.0016 11 7 1.9720 -3.6081 -0.0016 12 6 1.2780 -4.8141 -0.0995 13 6 0.0303 -4.9505 0.5040 14 6 -0.6606 -6.1434 0.4102 15 6 -0.1208 -7.2063 -0.2860 16 6 1.1332 -7.0814 -0.8908 17 6 1.7150 -8.2192 -1.6325 18 6 1.1334 -9.4266 -1.7887 19 6 1.8712 -10.3310 -2.5225 20 6 3.0497 -9.8767 -2.9616 21 16 3.2735 -8.2099 -2.4478 22 6 1.8304 -5.8777 -0.7973 23 1 -0.4850 0.8401 0.0004 24 1 2.9397 -3.6095 0.0662 25 1 -0.3987 -4.1213 1.0471 26 1 -1.6280 -6.2434 0.8798 27 1 -0.6658 -8.1357 -0.3605 28 1 0.1661 -9.6658 -1.3719 29 1 1.5250 -11.3339 -2.7237 30 1 3.7568 -10.4470 -3.5459 31 1 2.7978 -5.7740 -1.2663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184746292.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:21 Heat of formation + Delta-G solvation = 19.051261 kcal Electronic energy + Delta-G solvation = -17234.729360 eV Core-core repulsion = 14379.479876 eV Total energy + Delta-G solvation = -2855.249483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.32520 -37.87411 -36.74033 -33.60742 -32.45915 -31.62512 -29.33584 -27.80181 -26.36576 -24.28964 -22.14725 -21.86912 -20.11694 -18.68915 -17.54064 -17.49629 -16.03265 -15.61088 -15.35123 -15.14403 -14.40988 -13.97864 -13.54442 -13.35484 -12.96120 -12.80272 -12.52555 -12.39640 -12.04408 -11.87197 -11.42335 -11.17701 -11.07667 -11.03229 -10.65255 -10.48607 -10.32850 -9.59611 -9.15199 -8.89514 -8.49451 -7.86688 -7.68060 -7.08233 -6.40163 -4.93455 0.66081 1.62754 1.95058 2.03268 2.08212 2.92745 3.02703 3.11421 3.15921 3.95652 4.25466 4.48027 4.58515 4.90077 5.03210 5.33819 5.39704 5.48767 5.63903 5.68502 5.88450 5.99249 6.10595 6.21589 6.28308 6.47526 6.52967 6.87083 7.06544 7.08519 7.20892 7.37813 7.83239 8.00810 8.17197 8.77801 9.25255 10.35144 10.55246 Molecular weight = 273.06amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.003965 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.654382 B = 7060.086352 C = 7758.104738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.544 3.456 10 O -0.567 6.567 11 N -0.703 5.703 12 C 0.197 3.803 13 C -0.119 4.119 14 C -0.102 4.102 15 C -0.141 4.141 16 C -0.015 4.015 17 C -0.113 4.113 18 C -0.149 4.149 19 C -0.128 4.128 20 C -0.233 4.233 21 S 0.115 5.885 22 C -0.164 4.164 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.146 0.854 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -15.052 -2.635 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.353 3.647 10 O -0.450 6.450 11 N -0.346 5.346 12 C 0.098 3.902 13 C -0.140 4.140 14 C -0.120 4.120 15 C -0.163 4.163 16 C -0.018 4.018 17 C -0.231 4.231 18 C -0.178 4.178 19 C -0.159 4.159 20 C -0.368 4.368 21 S 0.380 5.620 22 C -0.187 4.187 23 H 0.083 0.917 24 H 0.225 0.775 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.915 -13.772 -2.878 14.903 hybrid contribution -0.119 -0.319 0.035 0.343 sum 4.796 -14.092 -2.843 15.154 Atomic orbital electron populations 1.70028 1.07280 1.27809 1.32342 1.25763 0.94663 1.00720 0.92381 0.86220 0.80537 0.81075 0.78450 1.18549 1.19918 1.19900 1.20070 0.94416 0.89974 1.52843 0.91102 1.17066 0.87626 0.82037 0.77969 1.90631 1.13562 1.85884 1.54928 1.44181 1.09596 1.04267 1.76563 1.17819 0.93227 0.86338 0.92860 1.21698 0.95055 0.97679 0.99588 1.20931 0.99448 0.92739 0.98927 1.20904 0.94964 0.99116 1.01274 1.17666 0.94690 0.90816 0.98597 1.23150 0.98139 0.97562 1.04221 1.20303 1.02089 0.92448 1.02979 1.20033 0.94560 1.00981 1.00315 1.25703 1.02594 0.98947 1.09596 1.84255 1.17808 1.10073 1.49830 1.20880 1.01406 0.93516 1.02892 0.91674 0.77457 0.83621 0.86184 0.86659 0.84171 0.84505 0.82131 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.35 11.73 55.55 0.65 -20.69 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 3 Si 0.91 19.19 29.56 -169.99 -5.02 14.17 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.53 9.31 -37.55 -0.35 -14.88 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.54 14.98 7.41 -14.92 -0.11 14.86 16 10 O -0.57 -17.44 12.29 5.13 0.06 -17.38 16 11 N -0.70 -15.88 5.31 -12.48 -0.07 -15.94 16 12 C 0.20 4.17 6.29 -83.83 -0.53 3.64 16 13 C -0.12 -2.52 8.69 -39.22 -0.34 -2.86 16 14 C -0.10 -1.77 10.02 -39.67 -0.40 -2.17 16 15 C -0.14 -2.26 9.55 -39.07 -0.37 -2.63 16 16 C -0.02 -0.25 5.87 -104.99 -0.62 -0.87 16 17 C -0.11 -1.65 6.37 -36.87 -0.23 -1.89 16 18 C -0.15 -1.86 9.65 -40.89 -0.39 -2.26 16 19 C -0.13 -1.39 10.16 -41.30 -0.42 -1.81 16 20 C -0.23 -2.50 11.23 29.15 0.33 -2.17 16 21 S 0.11 1.46 22.25 -107.50 -2.39 -0.93 16 22 C -0.16 -3.01 9.51 -38.98 -0.37 -3.38 16 23 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 24 H 0.39 7.61 8.78 -40.82 -0.36 7.25 16 25 H 0.15 3.51 6.21 -52.49 -0.33 3.18 16 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.12 1.50 6.76 -52.49 -0.35 1.15 16 28 H 0.14 1.53 6.89 -52.48 -0.36 1.17 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.12 1.94 7.28 -52.48 -0.38 1.56 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -31.89 288.24 -8.92 -40.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.60 Total: 9.80 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -3.90 Total: -14.17 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.59 Total: -36.64 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.06 Total: -17.38 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.39 Total: -0.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.89 -8.92 -40.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184746292.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds