Wall clock time and date at job start Mon Mar 30 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36110 * 117.00012 * 2 1 4 4 C 1.38943 * 120.09584 * 269.97727 * 3 2 1 5 5 O 1.35998 * 120.03303 * 359.97438 * 4 3 2 6 6 C 1.38681 * 119.93288 * 180.02562 * 4 3 2 7 7 C 1.38254 * 120.12010 * 359.97438 * 6 4 3 8 8 C 1.38194 * 120.19236 * 359.78892 * 7 6 4 9 9 C 1.38843 * 120.06934 * 0.46834 * 8 7 6 10 10 N 1.39981 * 120.06192 * 179.78694 * 9 8 7 11 11 S 1.65598 * 119.99782 * 327.63845 * 10 9 8 12 12 O 1.42094 * 106.40208 * 314.08027 * 11 10 9 13 13 O 1.42105 * 106.40192 * 181.16097 * 11 10 9 14 14 C 1.76200 * 107.21863 * 67.62385 * 11 10 9 15 15 H 1.07994 * 120.00017 * 359.97438 * 14 11 10 16 16 C 1.37882 * 119.99886 * 179.72678 * 14 11 10 17 17 N 1.31512 * 119.99964 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99864 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47240 * 119.99519 * 18 16 14 21 21 H 1.48496 * 109.46966 * 239.99522 * 18 16 14 22 22 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47195 * 299.99842 * 1 2 3 24 24 H 1.09003 * 109.46886 * 60.00660 * 1 2 3 25 25 H 0.96699 * 114.00301 * 89.99817 * 5 4 3 26 26 H 1.07994 * 119.94206 * 180.02562 * 6 4 3 27 27 H 1.08003 * 119.90351 * 180.02562 * 7 6 4 28 28 H 1.07997 * 119.96140 * 180.25320 * 8 7 6 29 29 H 0.97001 * 120.00112 * 147.63302 * 10 9 8 30 30 H 0.97001 * 119.99859 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 2.3637 1.8333 -1.2021 5 8 2.0570 1.2294 -2.3814 6 6 2.9937 3.0687 -1.1982 7 6 3.3067 3.6841 -0.0003 8 6 2.9896 3.0737 1.1982 9 6 2.3636 1.8344 1.2036 10 7 2.0465 1.2142 2.4178 11 16 3.0164 1.4399 3.7409 12 8 4.3541 1.2753 3.2906 13 8 2.4492 0.6681 4.7906 14 6 2.8575 3.1274 4.2223 15 1 2.2095 3.7888 3.6664 16 6 3.5565 3.6023 5.3118 17 7 4.3415 2.7956 5.9919 18 14 3.3886 5.3915 5.8217 19 1 2.4523 6.0832 4.8997 20 1 2.8622 5.4638 7.2083 21 1 4.7182 6.0501 5.7621 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.1811 1.4554 -2.7231 26 1 3.2396 3.5514 -2.1324 27 1 3.7971 4.6464 -0.0014 28 1 3.2322 3.5596 2.1317 29 1 1.2587 0.6523 2.4842 30 1 4.8330 3.1296 6.7586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:03 Heat of formation + Delta-G solvation = -140.990936 kcal Electronic energy + Delta-G solvation = -19451.335390 eV Core-core repulsion = 16146.003941 eV Total energy + Delta-G solvation = -3305.331448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 273.055 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18184 -37.31752 -36.90528 -35.35024 -34.14287 -33.96114 -33.21307 -29.49378 -28.49926 -26.58103 -26.34262 -22.46334 -22.06994 -19.21175 -18.58410 -17.65553 -17.33527 -16.99920 -16.13838 -15.59918 -15.39102 -14.92187 -14.50305 -14.33206 -14.12846 -13.96242 -13.50863 -12.51790 -12.38269 -12.14727 -11.94933 -11.65122 -11.32775 -11.11261 -10.85708 -10.80544 -10.66836 -10.47830 -10.35327 -10.32795 -9.61857 -9.36267 -8.93504 -8.35636 -7.78420 -6.83565 -5.48358 1.35897 1.52340 2.06269 2.98415 3.07329 3.13400 3.64604 3.93237 3.96451 4.21335 4.47599 4.52044 5.18060 5.23859 5.29813 5.43066 5.49020 5.58463 5.67122 5.74640 5.88837 6.20746 6.35441 6.45842 6.68837 6.76984 6.96722 7.18226 7.38071 7.61818 7.79046 7.92205 8.73182 10.10679 Molecular weight = 273.05amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.006987 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.446803 B = 4006.310557 C = 4642.320258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.024 3.976 4 C 0.106 3.894 5 O -0.488 6.488 6 C -0.169 4.169 7 C -0.073 4.073 8 C -0.167 4.167 9 C 0.197 3.803 10 N -1.062 6.062 11 S 2.700 3.300 12 O -0.986 6.986 13 O -0.995 6.995 14 C -1.023 5.023 15 H 0.111 0.889 16 C 0.134 3.866 17 N -0.839 5.839 18 Si 0.923 3.077 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.381 0.619 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.411 0.589 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 2.783 -11.801 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C -0.025 4.025 4 C 0.060 3.940 5 O -0.296 6.296 6 C -0.188 4.188 7 C -0.092 4.092 8 C -0.188 4.188 9 C 0.097 3.903 10 N -0.803 5.803 11 S 2.801 3.199 12 O -0.976 6.976 13 O -0.986 6.986 14 C -1.156 5.156 15 H 0.129 0.871 16 C -0.085 4.085 17 N -0.468 5.468 18 Si 0.746 3.254 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.112 0.888 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.236 0.764 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.186 0.814 29 H 0.245 0.755 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.133 1.652 -11.122 12.808 hybrid contribution -1.339 1.443 0.219 1.981 sum -7.472 3.095 -10.903 13.575 Atomic orbital electron populations 1.23006 0.80335 1.03083 1.00233 1.86206 1.18933 1.24207 1.94200 1.18811 1.04178 0.88436 0.91035 1.18470 1.00069 0.91316 0.84102 1.84901 1.38641 1.70739 1.35369 1.21208 1.04003 0.94626 0.98996 1.20880 0.97589 0.99835 0.90902 1.21965 1.01482 0.93336 1.01989 1.17661 0.96639 0.90810 0.85170 1.54312 1.42258 1.60105 1.23597 1.01150 0.71968 0.76867 0.69935 1.93416 1.35071 1.88316 1.80817 1.93397 1.78902 1.73485 1.52779 1.30571 1.39886 1.20265 1.24871 0.87092 1.24767 0.90415 1.00646 0.92704 1.69895 1.22490 1.37180 1.17197 0.86087 0.79153 0.81007 0.79149 1.18370 1.19516 1.19409 0.88840 0.93643 0.94063 0.76445 0.85256 0.84777 0.81393 0.75545 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.32 -5.37 9.72 -34.69 -0.34 -5.70 16 3 C 0.02 0.42 5.75 -38.99 -0.22 0.20 16 4 C 0.11 1.64 6.71 -39.16 -0.26 1.38 16 5 O -0.49 -6.46 13.29 -34.34 -0.46 -6.92 16 6 C -0.17 -2.38 9.98 -39.41 -0.39 -2.77 16 7 C -0.07 -1.12 10.03 -39.59 -0.40 -1.51 16 8 C -0.17 -3.16 8.91 -39.37 -0.35 -3.52 16 9 C 0.20 3.89 6.22 -83.59 -0.52 3.37 16 10 N -1.06 -22.28 5.68 32.50 0.18 -22.10 16 11 S 2.70 71.10 4.63 -107.50 -0.50 70.61 16 12 O -0.99 -28.85 17.43 -57.17 -1.00 -29.84 16 13 O -1.00 -28.78 18.02 -57.17 -1.03 -29.81 16 14 C -1.02 -26.52 7.57 30.60 0.23 -26.29 16 15 H 0.11 2.57 6.92 -52.49 -0.36 2.21 16 16 C 0.13 3.55 5.46 -17.82 -0.10 3.45 16 17 N -0.84 -23.76 13.19 55.43 0.73 -23.03 16 18 Si 0.92 19.42 29.54 -169.99 -5.02 14.40 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.52 7.70 -51.93 -0.40 0.12 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.38 3.00 9.06 45.56 0.41 3.41 16 26 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.17 3.44 4.49 -52.49 -0.24 3.21 16 29 H 0.41 7.49 8.06 -34.47 -0.28 7.22 16 30 H 0.29 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -35.74 281.38 -5.77 -41.51 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -1.69 Total: 10.89 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -0.90 Total: -24.25 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.92 Total: -45.13 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -2.82 Total: -72.27 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 71.10 SS G_CDS: -0.50 Total: 70.61 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -35.74 -5.77 -41.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.477 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds