Wall clock time and date at job start Mon Mar 30 2020 19:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39760 * 120.07533 * 260.27849 * 3 2 1 5 5 C 1.38050 * 120.13412 * 179.77071 * 4 3 2 6 6 C 1.38104 * 120.30232 * 0.50480 * 5 4 3 7 7 C 1.39662 * 120.16222 * 359.74831 * 6 5 4 8 8 C 1.47858 * 120.07346 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00029 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99900 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99679 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46718 * 180.02562 * 11 10 8 13 13 O 1.21290 * 119.99938 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99732 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00037 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99573 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00145 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00094 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99718 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47080 * 60.00288 * 19 17 15 21 21 H 1.48499 * 109.46703 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47109 * 299.99913 * 19 17 15 23 23 C 1.39330 * 119.85456 * 359.97438 * 7 6 5 24 24 H 1.07988 * 119.93555 * 359.97438 * 4 3 2 25 25 H 1.07995 * 119.84718 * 180.25656 * 5 4 3 26 26 H 1.08006 * 119.91846 * 179.76838 * 6 5 4 27 27 H 0.96997 * 119.99885 * 0.02562 * 10 8 7 28 28 H 1.08997 * 109.47341 * 299.99781 * 11 10 8 29 29 H 1.08995 * 109.47417 * 60.00087 * 11 10 8 30 30 H 0.96999 * 120.00189 * 359.97438 * 14 12 11 31 31 H 0.96994 * 119.99872 * 180.02562 * 18 17 15 32 32 H 1.07997 * 120.14769 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2052 1.1921 5 6 4.6488 0.2013 1.1943 6 6 5.3469 0.0060 0.0188 7 6 4.6598 -0.1943 -1.1805 8 6 5.4093 -0.4038 -2.4377 9 8 4.8099 -0.5785 -3.4806 10 7 6.7570 -0.4010 -2.4273 11 6 7.4995 -0.6090 -3.6729 12 6 8.9790 -0.5611 -3.3897 13 8 9.3741 -0.3722 -2.2587 14 7 9.8629 -0.7281 -4.3934 15 6 11.2088 -0.6850 -4.1357 16 1 11.5606 -0.5168 -3.1286 17 6 12.1201 -0.8578 -5.1703 18 7 11.6920 -1.0619 -6.3959 19 14 13.9539 -0.7983 -4.8193 20 1 14.3069 -1.8652 -3.8485 21 1 14.7066 -1.0086 -6.0820 22 1 14.3059 0.5266 -4.2486 23 6 3.2665 -0.1974 -1.1894 24 1 2.7284 0.3633 2.1139 25 1 5.1852 0.3557 2.1188 26 1 6.4270 0.0079 0.0271 27 1 7.2353 -0.2619 -1.5950 28 1 7.2415 -1.5817 -4.0916 29 1 7.2401 0.1737 -4.3857 30 1 9.5469 -0.8796 -5.2978 31 1 12.3281 -1.1828 -7.1180 32 1 2.7304 -0.3523 -2.1140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343512708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:56:49 Heat of formation + Delta-G solvation = -41.163353 kcal Electronic energy + Delta-G solvation = -18849.671617 eV Core-core repulsion = 15581.350912 eV Total energy + Delta-G solvation = -3268.320705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43276 -40.25954 -39.42146 -37.49988 -36.26229 -35.39324 -33.37802 -32.68680 -32.24335 -29.29785 -26.58660 -25.14453 -24.26902 -21.94433 -21.38215 -20.33450 -19.92481 -18.06223 -17.59266 -17.16639 -17.00536 -16.76244 -16.29838 -16.02759 -15.68785 -15.56500 -15.08279 -15.04467 -14.78106 -14.23323 -13.91413 -13.89624 -13.70105 -13.51814 -13.19338 -12.87306 -12.83068 -12.44613 -12.34718 -12.12484 -11.53614 -11.18856 -10.53892 -10.34272 -10.08692 -10.06256 -9.99493 -8.48997 -5.99071 -0.41461 -0.04669 1.40109 1.44994 1.51802 1.55833 1.56147 1.92580 1.96504 2.10662 2.32583 2.77170 2.87450 3.13049 3.18645 3.58188 3.84530 4.03850 4.06898 4.21638 4.36029 4.43788 4.44734 4.59981 4.87405 5.13406 5.19877 5.22289 5.29687 5.40452 5.69661 5.93593 6.36825 6.44487 6.51462 7.05122 7.08409 7.46533 7.95877 8.67607 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.049150 B = 0.002958 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.547777 B = 9463.871379 C =10018.274661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.281 3.719 3 C -0.044 4.044 4 C -0.027 4.027 5 C -0.112 4.112 6 C -0.050 4.050 7 C -0.147 4.147 8 C 0.556 3.444 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.119 3.881 12 C 0.434 3.566 13 O -0.621 6.621 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.089 0.911 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.996 3.004 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.269 1.269 23 C -0.017 4.017 24 H 0.170 0.830 25 H 0.178 0.822 26 H 0.147 0.853 27 H 0.416 0.584 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.399 0.601 31 H 0.279 0.721 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 2.258 13.542 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.034 4.034 3 C -0.048 4.048 4 C -0.047 4.047 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.150 4.150 8 C 0.345 3.655 9 O -0.458 6.458 10 N -0.354 5.354 11 C -0.008 4.008 12 C 0.221 3.779 13 O -0.509 6.509 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.107 0.893 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.819 3.181 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.038 4.038 24 H 0.187 0.813 25 H 0.196 0.804 26 H 0.165 0.835 27 H 0.256 0.744 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.905 2.225 13.333 18.689 hybrid contribution 1.331 -0.115 -0.683 1.500 sum -11.574 2.110 12.650 17.276 Atomic orbital electron populations 1.81289 1.13260 1.10493 1.08509 1.25742 0.92600 0.92417 0.92634 1.15850 0.83538 1.09906 0.95507 1.21779 0.94707 0.91525 0.96730 1.21462 0.93325 0.99033 0.99102 1.21923 1.01563 0.92027 0.91379 1.19575 0.93591 1.08637 0.93170 1.18586 0.81606 0.76157 0.89136 1.90763 1.69325 1.51600 1.34153 1.45582 1.05779 1.72105 1.11900 1.20822 0.88104 1.04065 0.87849 1.20370 0.88432 0.83631 0.85472 1.90463 1.80629 1.57022 1.22823 1.41852 1.05929 1.61909 1.09844 1.19712 0.81808 1.48799 0.96203 0.89326 1.26127 1.04954 0.95803 0.94313 1.69673 1.37608 1.47979 1.00465 0.84936 0.76262 0.79118 0.77747 1.19401 1.19914 1.19414 1.21171 0.92630 0.92356 0.97688 0.81285 0.80416 0.83549 0.74409 0.88551 0.88540 0.76728 0.91124 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.09 18.54 19.00 0.35 -10.74 16 2 C 0.28 5.30 15.32 88.33 1.35 6.66 16 3 C -0.04 -0.66 5.73 -21.40 -0.12 -0.78 16 4 C -0.03 -0.23 9.75 22.59 0.22 -0.01 16 5 C -0.11 -0.89 10.02 22.19 0.22 -0.67 16 6 C -0.05 -0.70 9.54 22.58 0.22 -0.48 16 7 C -0.15 -3.01 5.87 -20.12 -0.12 -3.13 16 8 C 0.56 15.85 7.77 86.79 0.67 16.52 16 9 O -0.58 -20.28 16.34 -3.88 -0.06 -20.34 16 10 N -0.70 -20.64 5.48 -469.69 -2.57 -23.21 16 11 C 0.12 4.04 6.15 85.64 0.53 4.57 16 12 C 0.43 18.82 7.85 87.66 0.69 19.51 16 13 O -0.62 -29.85 15.24 -3.06 -0.05 -29.90 16 14 N -0.56 -26.97 5.29 -306.98 -1.62 -28.60 16 15 C -0.34 -17.85 9.68 84.04 0.81 -17.04 16 16 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -47.78 13.05 21.66 0.28 -47.50 16 19 Si 1.00 40.56 29.55 68.60 2.03 42.59 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 C -0.02 -0.32 9.30 22.80 0.21 -0.11 16 24 H 0.17 0.44 8.06 -2.92 -0.02 0.42 16 25 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 26 H 0.15 1.90 6.39 -2.91 -0.02 1.88 16 27 H 0.42 11.46 5.46 -92.71 -0.51 10.95 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 31 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.13 2.84 7.64 -2.91 -0.02 2.82 16 Total: -1.00 -68.17 302.54 3.47 -64.70 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.04 Total: 28.07 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 5.15 Total: 24.93 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -3.56 Total: -110.05 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.11 Total: -50.24 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.17 3.47 -64.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.536 kcal (2) G-P(sol) polarization free energy of solvation -68.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds