Wall clock time and date at job start Mon Mar 30 2020 19:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39877 * 125.89624 * 2 1 4 4 C 1.35319 * 107.91756 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.12443 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.46719 * 120.00673 * 5 4 3 7 7 F 1.39902 * 109.47452 * 240.00239 * 5 4 3 8 8 N 1.34945 * 107.74770 * 0.02562 * 4 3 2 9 9 C 1.46500 * 126.03821 * 180.02562 * 8 4 3 10 10 C 1.50696 * 109.47396 * 269.99730 * 9 8 4 11 11 O 1.21279 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46791 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00483 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99433 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00266 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99510 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47096 * 90.00407 * 18 16 14 20 20 H 1.48507 * 109.47207 * 209.99872 * 18 16 14 21 21 H 1.48490 * 109.47391 * 329.99874 * 18 16 14 22 22 N 1.30833 * 125.90276 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47140 * 270.02712 * 1 2 3 24 24 H 1.09000 * 109.46925 * 30.02758 * 1 2 3 25 25 H 1.08998 * 109.46805 * 150.01901 * 1 2 3 26 26 H 1.07996 * 126.04364 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47167 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.46946 * 29.99763 * 9 8 4 29 29 H 1.09006 * 109.46968 * 149.99628 * 9 8 4 30 30 H 0.96998 * 119.99957 * 0.02562 * 12 10 9 31 31 H 1.08998 * 109.46771 * 299.99849 * 13 12 10 32 32 H 1.09002 * 109.46816 * 60.00375 * 13 12 10 33 33 H 0.97000 * 119.99972 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5990 0.0002 6 9 5.5992 1.3388 1.1428 7 9 5.5997 1.3375 -1.1417 8 7 3.6088 -0.6340 0.0004 9 6 4.7900 -1.5007 0.0013 10 6 5.1963 -1.7977 -1.4191 11 8 4.5621 -1.3310 -2.3415 12 7 6.2651 -2.5811 -1.6645 13 6 6.6598 -2.8703 -3.0454 14 6 7.8757 -3.7607 -3.0443 15 1 8.3106 -4.0796 -2.1086 16 6 8.4327 -4.1681 -4.2380 17 7 7.9034 -3.7793 -5.3774 18 14 9.9394 -5.2724 -4.2366 19 1 9.5110 -6.6942 -4.2371 20 1 10.7536 -5.0003 -5.4484 21 1 10.7513 -5.0004 -3.0235 22 7 2.2742 -1.0598 -0.0005 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.9923 2.1599 0.0004 27 1 4.5268 2.6445 -0.0001 28 1 5.6089 -0.9981 0.5160 29 1 4.5559 -2.4332 0.5149 30 1 6.7726 -2.9541 -0.9268 31 1 5.8409 -3.3735 -3.5595 32 1 6.8933 -1.9378 -3.5594 33 1 8.2951 -4.0663 -6.2171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467581397.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:58:45 Heat of formation + Delta-G solvation = -64.948560 kcal Electronic energy + Delta-G solvation = -20931.840374 eV Core-core repulsion = 17244.091830 eV Total energy + Delta-G solvation = -3687.748544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.103 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.16287 -47.13529 -41.37207 -38.78306 -34.37116 -33.87807 -32.40708 -31.58512 -29.85804 -27.58697 -26.30253 -25.64397 -22.63867 -20.99533 -20.19466 -19.69911 -17.74993 -17.48251 -17.31975 -17.12516 -15.93726 -15.73042 -15.07767 -14.89795 -14.70523 -14.11673 -14.02095 -13.62509 -13.49628 -13.38924 -13.10148 -12.95043 -12.56724 -12.51509 -12.34450 -12.00273 -11.61859 -11.49388 -11.01412 -10.90438 -10.60797 -10.35294 -9.61406 -9.43903 -9.25591 -8.77968 -8.57140 -7.98415 -6.19076 -4.26644 1.53406 2.23298 2.60631 3.14169 3.23088 3.29037 3.31483 3.36695 3.87754 3.95885 4.32211 4.33594 4.48352 4.80801 4.93415 5.06240 5.13833 5.17283 5.29111 5.40224 5.49992 5.58735 5.72806 5.93737 6.53959 6.70598 7.23755 7.31338 7.46814 7.59407 7.60750 7.92390 8.48946 8.70465 8.95572 9.39644 10.91109 Molecular weight = 273.10amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.004291 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.110091 B = 6523.154410 C = 7026.450941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.066 3.934 3 C -0.229 4.229 4 C 0.013 3.987 5 C 0.336 3.664 6 F -0.198 7.198 7 F -0.182 7.182 8 N -0.324 5.324 9 C 0.102 3.898 10 C 0.485 3.515 11 O -0.532 6.532 12 N -0.706 5.706 13 C 0.252 3.748 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.262 5.262 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.392 0.608 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 10.763 14.536 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C -0.259 4.259 4 C -0.115 4.115 5 C 0.280 3.720 6 F -0.179 7.179 7 F -0.163 7.163 8 N -0.105 5.105 9 C -0.023 4.023 10 C 0.266 3.734 11 O -0.409 6.409 12 N -0.355 5.355 13 C 0.132 3.868 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.085 5.085 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.172 0.828 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.643 9.692 13.622 19.300 hybrid contribution 1.333 -0.042 0.159 1.343 sum -8.310 9.650 13.780 18.764 Atomic orbital electron populations 1.20164 0.86196 1.03587 1.02854 1.22311 0.97135 0.90318 1.00237 1.21051 0.89835 1.00319 1.14704 1.21440 0.96775 0.85868 1.07465 1.20024 0.81067 0.98990 0.71906 1.93018 1.77778 1.95860 1.51264 1.93151 1.77092 1.95737 1.50339 1.47849 1.05168 1.03039 1.54433 1.21796 0.85180 0.96930 0.98404 1.20384 0.82239 0.80785 0.89953 1.90728 1.53351 1.51607 1.45192 1.46390 1.28341 1.48639 1.12156 1.19151 0.95296 0.96540 0.75853 1.21205 1.12484 1.31492 0.93136 0.91788 1.24956 0.97631 0.96220 0.95165 1.69977 1.40516 1.44166 0.97541 0.86391 0.82090 0.80537 0.77756 1.20429 1.20964 1.19698 1.77387 0.85740 1.22626 1.22756 0.90528 0.90311 0.90706 0.82751 0.84454 0.86303 0.85699 0.77540 0.95440 0.95339 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 36.01 0.38 -0.26 16 2 C 0.07 0.89 7.22 -82.40 -0.59 0.30 16 3 C -0.23 -2.83 10.63 -40.01 -0.43 -3.25 16 4 C 0.01 0.19 6.37 -82.27 -0.52 -0.34 16 5 C 0.34 4.01 5.30 36.00 0.19 4.20 16 6 F -0.20 -2.39 16.39 2.25 0.04 -2.35 16 7 F -0.18 -2.94 17.30 2.25 0.04 -2.90 16 8 N -0.32 -5.32 3.10 -58.31 -0.18 -5.50 16 9 C 0.10 1.58 6.70 -5.20 -0.03 1.54 16 10 C 0.48 9.99 7.90 -10.99 -0.09 9.90 16 11 O -0.53 -13.43 16.43 5.56 0.09 -13.34 16 12 N -0.71 -14.94 5.55 -61.47 -0.34 -15.28 16 13 C 0.25 6.75 5.43 -5.19 -0.03 6.73 16 14 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.88 -26.25 13.29 55.43 0.74 -25.51 16 18 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 N -0.26 -4.40 12.57 33.67 0.42 -3.98 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.14 0.98 8.11 -51.93 -0.42 0.56 16 28 H 0.12 1.53 6.97 -51.93 -0.36 1.17 16 29 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -36.00 306.42 -4.76 -40.76 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.62 Total: 2.25 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.54 Total: 5.37 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.64 Total: -50.27 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.08 Total: -5.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.00 -4.76 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581397.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.188 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds