Wall clock time and date at job start Mon Mar 30 2020 19:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47289 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47582 * 300.00588 * 3 2 1 6 6 H 1.48505 * 109.47201 * 60.00604 * 3 2 1 7 7 C 1.38645 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00295 * 185.40280 * 9 7 2 11 11 C 1.38950 * 120.02976 * 5.92354 * 10 9 7 12 12 C 1.38136 * 120.07271 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14084 * 359.74544 * 12 11 10 14 14 C 1.38945 * 120.06469 * 0.51193 * 13 12 11 15 15 N 1.39831 * 120.03872 * 179.76650 * 14 13 12 16 16 C 1.34772 * 120.00426 * 146.03239 * 15 14 13 17 17 O 1.21631 * 119.99510 * 354.78929 * 16 15 14 18 18 C 1.47065 * 120.00306 * 175.06118 * 16 15 14 19 19 C 1.33022 * 119.99692 * 179.72762 * 18 16 15 20 20 C 1.50703 * 119.99297 * 179.97438 * 19 18 16 21 21 C 1.52999 * 117.49555 * 188.74350 * 20 19 18 22 22 C 1.53007 * 117.49392 * 120.08733 * 20 19 18 23 23 C 1.38727 * 120.02991 * 185.90512 * 10 9 7 24 24 H 0.97002 * 120.00117 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96262 * 359.96500 * 11 10 9 26 26 H 1.08002 * 119.92729 * 180.02562 * 12 11 10 27 27 H 1.08004 * 119.96804 * 180.25450 * 13 12 11 28 28 H 0.97010 * 119.99774 * 326.03298 * 15 14 13 29 29 H 1.08002 * 119.99760 * 359.72318 * 18 16 15 30 30 H 1.07993 * 119.99997 * 359.97438 * 19 18 16 31 31 H 1.08995 * 115.55437 * 334.41351 * 20 19 18 32 32 H 1.09007 * 117.49783 * 0.02562 * 21 20 19 33 33 H 1.09003 * 117.50069 * 145.01971 * 21 20 19 34 34 H 1.08996 * 117.49454 * 214.97326 * 22 20 19 35 35 H 1.08999 * 117.49961 * 359.97354 * 22 20 19 36 36 H 1.07994 * 120.07797 * 0.04560 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3966 -1.2123 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3683 -0.0005 10 6 2.0697 -3.5042 0.1128 11 6 3.4374 -3.4273 0.3454 12 6 4.1858 -4.5825 0.4614 13 6 3.5765 -5.8180 0.3519 14 6 2.2102 -5.9016 0.1140 15 7 1.5950 -7.1520 -0.0016 16 6 0.3336 -7.3260 0.4400 17 8 -0.2360 -6.4238 1.0241 18 6 -0.3519 -8.6085 0.2210 19 6 -1.5950 -8.7819 0.6617 20 6 -2.2976 -10.0960 0.4367 21 6 -3.7867 -10.1687 0.7804 22 6 -2.7599 -10.8705 1.6727 23 6 1.4556 -4.7428 -0.0031 24 1 -0.4850 0.8401 0.0004 25 1 3.9158 -2.4633 0.4354 26 1 5.2487 -4.5200 0.6426 27 1 4.1637 -6.7194 0.4472 28 1 2.0762 -7.8944 -0.3996 29 1 0.1539 -9.4095 -0.2976 30 1 -2.1006 -7.9811 1.1807 31 1 -1.9497 -10.6747 -0.4189 32 1 -4.2583 -9.2659 1.1687 33 1 -4.4185 -10.7955 0.1510 34 1 -2.7165 -11.9587 1.6299 35 1 -2.5554 -10.4298 2.6484 36 1 0.3928 -4.8051 -0.1843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079601708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:37 Heat of formation + Delta-G solvation = 7.616236 kcal Electronic energy + Delta-G solvation = -19367.158576 eV Core-core repulsion = 16204.493456 eV Total energy + Delta-G solvation = -3162.665120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10221 -38.63041 -37.79782 -36.46921 -34.01830 -32.58862 -32.21080 -29.47785 -28.47140 -25.36255 -24.64458 -22.69970 -22.23864 -21.39232 -20.43940 -19.56496 -18.16891 -17.45740 -16.86849 -16.06387 -15.29696 -15.05138 -14.91854 -14.74751 -14.23383 -13.99530 -13.68645 -13.49710 -12.87949 -12.71903 -12.49066 -11.94922 -11.77769 -11.69780 -11.50995 -11.37238 -11.14217 -10.97911 -10.78426 -10.73397 -10.41141 -9.82566 -9.66535 -9.28872 -9.19098 -8.78728 -7.64260 -7.14779 -6.39158 -3.98368 1.19755 2.18124 2.38250 3.15581 3.16604 3.22797 3.31226 3.36761 3.67883 4.00971 4.32926 4.54734 4.62275 4.65352 4.82488 5.02737 5.13128 5.16344 5.31331 5.39116 5.54659 5.65412 5.75354 5.78618 5.86187 6.13515 6.15997 6.25761 6.30284 6.41383 6.74116 6.94111 7.07017 7.11711 7.37397 7.50567 7.75835 7.83254 8.05670 8.42342 9.05792 9.77609 10.78916 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003507 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.339293 B = 7982.830064 C = 9029.474838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.245 4.245 12 C -0.059 4.059 13 C -0.236 4.236 14 C 0.177 3.823 15 N -0.666 5.666 16 C 0.537 3.463 17 O -0.515 6.515 18 C -0.209 4.209 19 C -0.036 4.036 20 C -0.140 4.140 21 C -0.171 4.171 22 C -0.167 4.167 23 C -0.188 4.188 24 H 0.269 0.731 25 H 0.128 0.872 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.406 0.594 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -19.417 -0.206 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.265 4.265 12 C -0.078 4.078 13 C -0.257 4.257 14 C 0.084 3.916 15 N -0.310 5.310 16 C 0.327 3.673 17 O -0.391 6.391 18 C -0.230 4.230 19 C -0.056 4.056 20 C -0.158 4.158 21 C -0.208 4.208 22 C -0.204 4.204 23 C -0.209 4.209 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.241 0.759 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.831 -18.572 0.174 18.592 hybrid contribution 0.864 0.385 -0.221 0.971 sum 0.033 -18.187 -0.047 18.187 Atomic orbital electron populations 1.70069 1.05962 1.27496 1.46020 1.25308 0.95841 0.98841 0.96631 0.85640 0.79114 0.80400 0.78207 1.19092 1.20179 1.20168 1.21385 0.91820 0.80815 1.52692 0.88975 1.84008 1.34173 1.11374 1.78194 1.19119 0.90079 0.87712 0.91776 1.21184 0.94252 0.99031 1.11984 1.20507 0.98360 0.91677 0.97217 1.20274 0.93006 0.97550 1.14890 1.17172 0.91526 0.83606 0.99286 1.43287 1.14859 1.11638 1.61198 1.18661 0.81483 0.88404 0.78775 1.90890 1.65239 1.43346 1.39652 1.22451 0.96981 0.97021 1.06551 1.23101 0.93910 0.95582 0.92969 1.21322 0.97300 0.96564 1.00614 1.23043 0.91076 1.03353 1.03326 1.22999 1.03199 0.99163 0.95007 1.20025 1.00671 0.88825 1.11369 0.92094 0.85430 0.87034 0.87370 0.75888 0.85527 0.85204 0.86739 0.88122 0.88259 0.88232 0.88268 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.28 9.44 30.88 0.29 -10.99 16 8 H 0.09 2.45 5.29 -52.49 -0.28 2.17 16 9 O -0.17 -5.26 9.75 0.05 0.00 -5.25 16 10 C 0.17 4.33 6.64 -39.14 -0.26 4.07 16 11 C -0.24 -5.52 9.13 -39.36 -0.36 -5.88 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.24 -4.17 9.96 -39.34 -0.39 -4.57 16 14 C 0.18 3.45 6.27 -83.75 -0.52 2.92 16 15 N -0.67 -10.13 5.33 -10.96 -0.06 -10.19 16 16 C 0.54 8.77 7.50 -12.68 -0.10 8.67 16 17 O -0.52 -10.99 13.92 5.25 0.07 -10.92 16 18 C -0.21 -2.41 9.67 -37.81 -0.37 -2.78 16 19 C -0.04 -0.40 9.24 -36.12 -0.33 -0.73 16 20 C -0.14 -1.14 6.00 -91.77 -0.55 -1.69 16 21 C -0.17 -1.25 10.24 -26.69 -0.27 -1.52 16 22 C -0.17 -1.18 10.24 -26.69 -0.27 -1.45 16 23 C -0.19 -4.46 8.59 -39.20 -0.34 -4.80 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.13 2.85 5.71 -52.49 -0.30 2.55 16 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.41 4.34 8.80 -40.82 -0.36 3.99 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.66 7.49 -52.49 -0.39 1.27 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.13 3.26 6.44 -52.49 -0.34 2.92 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -34.79 318.93 -7.60 -42.39 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.18 Total: 7.79 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.97 Total: -19.27 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.70 Total: -35.53 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.79 -7.60 -42.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.002 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds