Wall clock time and date at job start Mon Mar 30 2020 19:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47289 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47582 * 300.00588 * 3 2 1 6 6 H 1.48505 * 109.47201 * 60.00604 * 3 2 1 7 7 C 1.38645 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00295 * 185.40280 * 9 7 2 11 11 C 1.38950 * 120.02976 * 5.92354 * 10 9 7 12 12 C 1.38136 * 120.07271 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14084 * 359.74544 * 12 11 10 14 14 C 1.38945 * 120.06469 * 0.51193 * 13 12 11 15 15 N 1.39831 * 120.03872 * 179.76650 * 14 13 12 16 16 C 1.34772 * 120.00426 * 146.03239 * 15 14 13 17 17 O 1.21631 * 119.99510 * 354.78929 * 16 15 14 18 18 C 1.47065 * 120.00306 * 175.06118 * 16 15 14 19 19 C 1.33022 * 119.99692 * 179.72762 * 18 16 15 20 20 C 1.50703 * 119.99297 * 179.97438 * 19 18 16 21 21 C 1.52999 * 117.49555 * 188.74350 * 20 19 18 22 22 C 1.53007 * 117.49392 * 120.08733 * 20 19 18 23 23 C 1.38727 * 120.02991 * 185.90512 * 10 9 7 24 24 H 0.97002 * 120.00117 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96262 * 359.96500 * 11 10 9 26 26 H 1.08002 * 119.92729 * 180.02562 * 12 11 10 27 27 H 1.08004 * 119.96804 * 180.25450 * 13 12 11 28 28 H 0.97010 * 119.99774 * 326.03298 * 15 14 13 29 29 H 1.08002 * 119.99760 * 359.72318 * 18 16 15 30 30 H 1.07993 * 119.99997 * 359.97438 * 19 18 16 31 31 H 1.08995 * 115.55437 * 334.41351 * 20 19 18 32 32 H 1.09007 * 117.49783 * 0.02562 * 21 20 19 33 33 H 1.09003 * 117.50069 * 145.01971 * 21 20 19 34 34 H 1.08996 * 117.49454 * 214.97326 * 22 20 19 35 35 H 1.08999 * 117.49961 * 359.97354 * 22 20 19 36 36 H 1.07994 * 120.07797 * 0.04560 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3966 -1.2123 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3683 -0.0005 10 6 2.0697 -3.5042 0.1128 11 6 3.4374 -3.4273 0.3454 12 6 4.1858 -4.5825 0.4614 13 6 3.5765 -5.8180 0.3519 14 6 2.2102 -5.9016 0.1140 15 7 1.5950 -7.1520 -0.0016 16 6 0.3336 -7.3260 0.4400 17 8 -0.2360 -6.4238 1.0241 18 6 -0.3519 -8.6085 0.2210 19 6 -1.5950 -8.7819 0.6617 20 6 -2.2976 -10.0960 0.4367 21 6 -3.7867 -10.1687 0.7804 22 6 -2.7599 -10.8705 1.6727 23 6 1.4556 -4.7428 -0.0031 24 1 -0.4850 0.8401 0.0004 25 1 3.9158 -2.4633 0.4354 26 1 5.2487 -4.5200 0.6426 27 1 4.1637 -6.7194 0.4472 28 1 2.0762 -7.8944 -0.3996 29 1 0.1539 -9.4095 -0.2976 30 1 -2.1006 -7.9811 1.1807 31 1 -1.9497 -10.6747 -0.4189 32 1 -4.2583 -9.2659 1.1687 33 1 -4.4185 -10.7955 0.1510 34 1 -2.7165 -11.9587 1.6299 35 1 -2.5554 -10.4298 2.6484 36 1 0.3928 -4.8051 -0.1843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079601708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:36 Heat of formation + Delta-G solvation = -16.081678 kcal Electronic energy + Delta-G solvation = -19368.186194 eV Core-core repulsion = 16204.493456 eV Total energy + Delta-G solvation = -3163.692738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57430 -40.36083 -38.62418 -38.10227 -35.55999 -34.27637 -33.55752 -31.19529 -30.09956 -27.38232 -25.84639 -23.70819 -23.24999 -23.01106 -21.66764 -20.60727 -19.93328 -19.14350 -18.29468 -17.32841 -16.79536 -16.48221 -16.36307 -16.00525 -15.84393 -15.49911 -15.48814 -14.86673 -14.41295 -14.24475 -13.65287 -13.58650 -13.23309 -12.93755 -12.71538 -12.62088 -12.40369 -12.37926 -12.14150 -12.08869 -11.52318 -11.36532 -11.28979 -10.87278 -10.76899 -10.13399 -9.35168 -8.87961 -8.47853 -6.17775 0.07814 0.60885 0.70048 1.33906 1.43613 1.53967 2.03267 2.17658 2.19456 2.82345 3.00900 3.16346 3.38451 3.63222 3.92860 3.99575 4.07199 4.12139 4.18088 4.35267 4.40517 4.41507 4.69221 4.71525 4.78857 4.99378 5.02178 5.09070 5.10344 5.24209 5.28099 5.39451 5.44558 5.47446 5.61650 5.72326 6.01642 6.18741 6.49135 6.95711 7.17220 7.78278 8.76426 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003507 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.339293 B = 7982.830064 C = 9029.474838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.029 4.029 3 Si 1.025 2.975 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.107 0.893 9 O -0.237 6.237 10 C 0.127 3.873 11 C -0.255 4.255 12 C -0.048 4.048 13 C -0.204 4.204 14 C 0.183 3.817 15 N -0.649 5.649 16 C 0.530 3.470 17 O -0.578 6.578 18 C -0.210 4.210 19 C -0.031 4.031 20 C -0.145 4.145 21 C -0.176 4.176 22 C -0.158 4.158 23 C -0.216 4.216 24 H 0.272 0.728 25 H 0.124 0.876 26 H 0.162 0.838 27 H 0.166 0.834 28 H 0.433 0.567 29 H 0.175 0.825 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -22.748 -0.469 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.844 3.156 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.124 0.876 9 O -0.143 6.143 10 C 0.076 3.924 11 C -0.275 4.275 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.088 3.912 15 N -0.295 5.295 16 C 0.322 3.678 17 O -0.458 6.458 18 C -0.230 4.230 19 C -0.051 4.051 20 C -0.163 4.163 21 C -0.213 4.213 22 C -0.195 4.195 23 C -0.237 4.237 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.179 0.821 27 H 0.183 0.817 28 H 0.273 0.727 29 H 0.192 0.808 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.359 -22.012 -0.110 22.138 hybrid contribution -0.080 1.053 -0.095 1.060 sum 2.279 -20.959 -0.204 21.084 Atomic orbital electron populations 1.70239 1.08327 1.28760 1.49028 1.26745 0.96889 1.03090 0.95797 0.84446 0.78358 0.74295 0.78516 1.16921 1.19261 1.19432 1.21952 0.92692 0.81220 1.53040 0.87579 1.83970 1.36219 1.12784 1.81353 1.19655 0.91814 0.87237 0.93680 1.21341 0.92968 1.00791 1.12362 1.21065 1.00456 0.90363 0.94718 1.20919 0.92006 0.99402 1.10149 1.17353 0.92390 0.83847 0.97567 1.43193 1.14782 1.10846 1.60690 1.19580 0.81425 0.89412 0.77388 1.90883 1.66553 1.45851 1.42557 1.22470 0.96967 0.95610 1.07942 1.23251 0.93931 0.96374 0.91520 1.21383 0.97511 0.95192 1.02171 1.23145 0.90962 1.03380 1.03795 1.23096 1.02025 1.00278 0.94053 1.20054 0.99673 0.90351 1.13665 0.91872 0.85789 0.82058 0.81678 0.72668 0.80796 0.88259 0.84283 0.89398 0.86368 0.85895 0.89151 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.05 13.67 21.61 0.30 -59.76 16 2 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 3 Si 1.03 44.46 29.55 68.60 2.03 46.49 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.41 -25.31 9.44 67.92 0.64 -24.67 16 8 H 0.11 5.87 5.29 -2.91 -0.02 5.85 16 9 O -0.24 -15.49 9.75 -22.75 -0.22 -15.71 16 10 C 0.13 6.96 6.64 22.56 0.15 7.11 16 11 C -0.25 -11.51 9.13 22.42 0.20 -11.31 16 12 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 13 C -0.20 -6.27 9.96 22.43 0.22 -6.05 16 14 C 0.18 6.87 6.27 38.16 0.24 7.11 16 15 N -0.65 -18.37 5.33 -306.83 -1.64 -20.01 16 16 C 0.53 17.25 7.50 86.56 0.65 17.90 16 17 O -0.58 -26.30 13.92 -4.13 -0.06 -26.36 16 18 C -0.21 -4.45 9.67 23.42 0.23 -4.23 16 19 C -0.03 -0.67 9.24 24.52 0.23 -0.44 16 20 C -0.14 -2.02 6.00 -11.54 -0.07 -2.09 16 21 C -0.18 -2.30 10.24 30.62 0.31 -1.99 16 22 C -0.16 -1.86 10.24 30.62 0.31 -1.55 16 23 C -0.22 -10.84 8.59 22.52 0.19 -10.65 16 24 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 25 H 0.12 5.59 5.71 -2.91 -0.02 5.57 16 26 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.43 7.36 8.80 -92.70 -0.82 6.55 16 29 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.10 2.75 7.49 -2.91 -0.02 2.73 16 31 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 5.27 6.44 -2.91 -0.02 5.25 16 Total: -1.00 -87.08 318.93 4.70 -82.38 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.29 Total: 26.42 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 4.00 Total: -33.45 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.34 Total: -79.77 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.28 Total: -42.07 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -87.08 4.70 -82.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.301 kcal (2) G-P(sol) polarization free energy of solvation -87.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds