Wall clock time and date at job start Mon Mar 30 2020 19:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99557 * 2 1 4 4 H 1.48505 * 109.46900 * 269.99744 * 3 2 1 5 5 H 1.48492 * 109.47570 * 29.99971 * 3 2 1 6 6 H 1.48503 * 109.46983 * 150.00374 * 3 2 1 7 7 C 1.37877 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99819 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00147 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47233 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47294 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54022 * 68.37397 * 11 10 9 13 13 O 1.42097 * 110.54697 * 291.62718 * 11 10 9 14 14 N 1.65600 * 104.45160 * 179.97438 * 11 10 9 15 15 C 1.47223 * 126.69894 * 270.00224 * 14 11 10 16 16 C 1.53800 * 106.35352 * 148.76189 * 15 14 11 17 17 H 1.09002 * 111.63291 * 257.33217 * 16 15 14 18 18 C 1.54189 * 109.81529 * 132.99106 * 16 15 14 19 19 C 1.54089 * 104.66611 * 223.86768 * 18 16 15 20 20 C 1.54853 * 103.09883 * 37.11033 * 19 18 16 21 21 C 1.54185 * 104.30036 * 322.47036 * 20 19 18 22 22 H 1.09004 * 112.24248 * 261.21022 * 21 20 19 23 23 C 1.47219 * 126.70365 * 90.00284 * 14 11 10 24 24 H 0.97000 * 120.00638 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47222 * 60.00077 * 9 7 2 26 26 H 1.09004 * 109.47348 * 300.00338 * 9 7 2 27 27 H 1.09004 * 109.46899 * 59.99907 * 10 9 7 28 28 H 1.08997 * 109.47273 * 299.99993 * 10 9 7 29 29 H 1.08994 * 110.08072 * 29.54121 * 15 14 11 30 30 H 1.09000 * 110.08175 * 267.98328 * 15 14 11 31 31 H 1.09001 * 110.46593 * 341.45875 * 18 16 15 32 32 H 1.09003 * 110.46463 * 104.05461 * 18 16 15 33 33 H 1.08994 * 110.06265 * 278.91881 * 19 18 16 34 34 H 1.08998 * 111.10158 * 155.78645 * 19 18 16 35 35 H 1.08999 * 110.46346 * 203.76253 * 20 19 18 36 36 H 1.09003 * 110.46471 * 81.17554 * 20 19 18 37 37 H 1.08996 * 110.08049 * 92.00752 * 23 14 11 38 38 H 1.09001 * 110.12171 * 330.48747 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 16 5.8356 -2.6364 -0.0014 12 8 6.3352 -2.1455 1.2351 13 8 6.3333 -2.1464 -1.2389 14 7 6.2489 -4.2400 -0.0004 15 6 6.4694 -5.0910 1.1805 16 6 6.0451 -6.5126 0.7751 17 1 5.0660 -6.7703 1.1791 18 6 7.1237 -7.5244 1.2113 19 6 7.2876 -8.4654 0.0022 20 6 7.1355 -7.5115 -1.2081 21 6 6.0439 -6.5138 -0.7719 22 1 5.0643 -6.7722 -1.1740 23 6 6.4676 -5.0930 -1.1802 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6796 0.8894 26 1 3.8746 -0.6806 -0.8905 27 1 3.6579 -3.1504 -0.8897 28 1 3.6587 -3.1501 0.8903 29 1 5.8589 -4.7414 2.0130 30 1 7.5234 -5.0800 1.4583 31 1 8.0683 -7.0154 1.4034 32 1 6.7976 -8.0715 2.0959 33 1 6.4981 -9.2168 0.0035 34 1 8.2706 -8.9363 0.0018 35 1 6.8157 -8.0645 -2.0913 36 1 8.0728 -6.9901 -1.4025 37 1 7.5211 -5.0823 -1.4596 38 1 5.8565 -4.7450 -2.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152576607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:14 Heat of formation + Delta-G solvation = -86.719288 kcal Electronic energy + Delta-G solvation = -19653.403732 eV Core-core repulsion = 16622.091868 eV Total energy + Delta-G solvation = -3031.311864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92473 -36.72535 -35.57665 -34.96535 -33.94365 -31.47834 -30.83955 -28.90758 -25.96938 -25.96361 -22.90177 -21.12857 -21.05144 -19.46525 -18.62327 -17.71632 -17.03626 -16.11473 -15.77696 -15.60004 -15.08344 -14.53794 -14.31401 -13.78626 -13.67197 -13.41244 -12.82587 -12.80567 -12.31377 -12.19699 -11.90240 -11.75063 -11.68014 -11.38678 -11.25299 -11.19447 -11.12445 -10.97873 -10.90327 -10.71288 -10.60093 -10.44484 -10.16255 -9.75721 -9.43600 -8.85821 -8.66563 -6.16866 -4.18153 0.61620 2.95168 3.26474 3.33768 3.38173 4.05456 4.18381 4.23316 4.35709 4.46398 4.56352 4.96355 4.97518 5.12766 5.15063 5.18766 5.26814 5.28208 5.37593 5.50538 5.52850 5.54548 5.62501 5.72673 5.77031 5.80320 5.90913 5.94831 6.04312 6.18558 6.20111 6.29096 6.43184 6.81617 6.93890 7.54516 8.36395 8.84126 9.42801 10.95523 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.004583 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.914148 B = 6107.899273 C = 6386.235611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.582 4.582 11 S 2.604 3.396 12 O -0.961 6.961 13 O -0.962 6.962 14 N -1.017 6.017 15 C 0.129 3.871 16 C -0.103 4.103 17 H 0.089 0.911 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.103 4.103 22 H 0.090 0.910 23 C 0.128 3.872 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.170 -16.836 0.017 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.715 4.715 11 S 2.703 3.297 12 O -0.952 6.952 13 O -0.952 6.952 14 N -0.853 5.853 15 C 0.004 3.996 16 C -0.123 4.123 17 H 0.107 0.893 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.123 4.123 22 H 0.108 0.892 23 C 0.003 3.997 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.654 -15.876 0.018 21.606 hybrid contribution -0.396 0.538 -0.017 0.668 sum 14.258 -15.339 0.001 20.942 Atomic orbital electron populations 1.69879 1.06207 1.27266 1.50022 1.24983 0.94819 0.99161 0.94116 0.86925 0.80711 0.83679 0.79150 1.19645 1.20718 1.18622 1.20845 0.87802 0.94907 1.52263 0.90437 1.19414 0.99922 0.87510 0.97821 1.30345 1.21381 1.08962 1.10819 1.05337 0.78993 0.71279 0.74073 1.93544 1.78917 1.77310 1.45430 1.93543 1.78981 1.77337 1.45359 1.59009 1.85148 1.28194 1.12908 1.21830 1.01076 0.89040 0.87693 1.22612 0.99735 0.94645 0.95287 0.89302 1.22338 0.98452 0.96842 0.97998 1.22372 1.01491 0.97681 0.94601 1.22485 0.98371 0.96744 0.97982 1.22624 0.99664 0.94727 0.95312 0.89200 1.21864 1.01081 0.89062 0.87732 0.92369 0.94950 0.95409 0.85745 0.85713 0.90580 0.91420 0.91292 0.91329 0.91590 0.91545 0.91431 0.91078 0.91413 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.18 4.05 -27.89 -0.11 -0.29 16 10 C -0.58 -10.93 6.12 37.16 0.23 -10.70 16 11 S 2.60 46.21 5.69 -107.50 -0.61 45.60 16 12 O -0.96 -19.49 17.66 -57.54 -1.02 -20.50 16 13 O -0.96 -19.43 17.66 -57.54 -1.02 -20.45 16 14 N -1.02 -13.92 3.62 -112.39 -0.41 -14.33 16 15 C 0.13 1.47 6.50 -3.23 -0.02 1.45 16 16 C -0.10 -0.93 3.86 -88.69 -0.34 -1.27 16 17 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.12 -0.87 6.34 -25.54 -0.16 -1.04 16 19 C -0.12 -0.83 6.86 -25.19 -0.17 -1.00 16 20 C -0.12 -0.87 6.38 -25.13 -0.16 -1.03 16 21 C -0.10 -0.93 3.89 -88.70 -0.35 -1.28 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 23 C 0.13 1.46 6.49 -3.24 -0.02 1.44 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 26 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 27 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 28 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.73 7.19 -51.93 -0.37 0.35 16 31 H 0.07 0.51 7.23 -51.93 -0.38 0.14 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.53 7.17 -51.93 -0.37 0.16 16 37 H 0.07 0.73 7.12 -51.93 -0.37 0.36 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -34.10 313.63 -9.83 -43.94 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.07 Total: -2.84 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -1.54 Total: -26.70 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.37 Total: -40.75 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.03 Total: -40.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.61 Total: 45.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.10 -9.83 -43.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152576607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.782 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds