Wall clock time and date at job start Mon Mar 30 2020 20:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00217 * 2 1 4 4 C 1.53000 * 109.47578 * 270.00331 * 3 2 1 5 5 H 1.09002 * 109.47903 * 305.00024 * 4 3 2 6 6 C 1.53093 * 109.48240 * 184.97543 * 4 3 2 7 7 C 1.53178 * 109.16255 * 182.39519 * 6 4 3 8 8 C 1.53178 * 109.03511 * 56.98447 * 7 6 4 9 9 C 1.53096 * 109.16278 * 303.01594 * 8 7 6 10 10 O 1.42904 * 109.47799 * 65.02287 * 4 3 2 11 11 C 1.34783 * 119.99690 * 180.02562 * 2 1 3 12 12 O 1.21278 * 119.99733 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00163 * 359.97438 * 11 2 1 14 14 S 1.80995 * 109.47191 * 180.02562 * 13 11 2 15 15 C 1.76200 * 100.00063 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00382 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00182 * 180.02562 * 15 14 13 18 18 N 1.31636 * 119.99751 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47237 * 59.99655 * 19 17 15 21 21 H 1.48497 * 109.47015 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47056 * 299.99747 * 19 17 15 23 23 H 1.09001 * 109.47521 * 89.99238 * 1 2 3 24 24 H 1.08997 * 109.47369 * 209.99944 * 1 2 3 25 25 H 1.09002 * 109.46889 * 329.99423 * 1 2 3 26 26 H 1.09005 * 109.47354 * 150.00344 * 3 2 1 27 27 H 1.09007 * 109.47232 * 30.00323 * 3 2 1 28 28 H 1.09000 * 109.52228 * 302.30500 * 6 4 3 29 29 H 1.08998 * 109.52401 * 62.49349 * 6 4 3 30 30 H 1.09002 * 109.54461 * 176.84793 * 7 6 4 31 31 H 1.08996 * 109.54596 * 297.11552 * 7 6 4 32 32 H 1.08999 * 109.52488 * 62.92180 * 8 7 6 33 33 H 1.08996 * 109.52248 * 183.05161 * 8 7 6 34 34 H 1.09003 * 109.48254 * 177.58780 * 9 8 7 35 35 H 1.08992 * 109.48305 * 297.61902 * 9 8 7 36 36 H 1.09001 * 109.47138 * 300.00495 * 13 11 2 37 37 H 1.09004 * 109.47286 * 60.00090 * 13 11 2 38 38 H 0.96996 * 119.99848 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9132 -1.9817 6 6 3.3238 2.9692 -1.4445 7 6 3.5248 3.4393 -2.8884 8 6 2.1551 3.6794 -3.5308 9 6 1.3289 2.3932 -3.4483 10 8 1.2061 1.9942 -2.0813 11 6 2.1388 -1.1673 -0.0005 12 8 3.3516 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 16 2.5614 -3.8481 -0.0005 15 6 1.4413 -5.2082 -0.0013 16 1 0.3760 -5.0306 -0.0012 17 6 1.9280 -6.5082 -0.0010 18 7 3.2264 -6.7248 -0.0006 19 14 0.7405 -7.9501 -0.0011 20 1 -0.1143 -7.8873 -1.2138 21 1 1.5066 -9.2222 -0.0013 22 1 -0.1148 -7.8870 1.2112 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 3.1500 1.1383 0.5138 27 1 1.6084 2.0283 0.5139 28 1 2.8310 3.7542 -0.8710 29 1 4.2917 2.7430 -0.9971 30 1 4.0976 4.3667 -2.8936 31 1 4.0617 2.6745 -3.4495 32 1 1.6387 4.4789 -2.9995 33 1 2.2872 3.9622 -4.5752 34 1 0.3376 2.5705 -3.8655 35 1 1.8257 1.6051 -4.0138 36 1 0.7589 -2.5302 0.8897 37 1 0.7583 -2.5299 -0.8903 38 1 3.5665 -7.6332 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330526310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:06 Heat of formation + Delta-G solvation = -93.365622 kcal Electronic energy + Delta-G solvation = -19137.144928 eV Core-core repulsion = 16105.544858 eV Total energy + Delta-G solvation = -3031.600070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92431 -38.83407 -35.27890 -33.76035 -32.40421 -32.24899 -29.43374 -27.41818 -25.85134 -25.40272 -24.24520 -22.43505 -20.41856 -19.13165 -17.64066 -16.72170 -16.34970 -16.16251 -15.69611 -15.22256 -14.78426 -14.69225 -14.54511 -13.97986 -13.45413 -13.24269 -12.85737 -12.79692 -12.57787 -12.48531 -12.20831 -12.00605 -11.72229 -11.43981 -11.23449 -11.02188 -11.01939 -10.96195 -10.74264 -10.49355 -9.79009 -9.60911 -9.28247 -9.03537 -8.42547 -8.19902 -6.47299 -6.19189 -3.89543 2.99741 3.09555 3.25182 3.28176 3.31237 3.63917 3.70295 4.23004 4.56495 4.62126 4.66305 4.79919 4.92824 5.07245 5.14010 5.15741 5.26162 5.30173 5.40793 5.51276 5.53167 5.59679 5.63223 5.69050 5.73310 5.78093 5.82068 5.89277 5.95857 5.97223 6.09209 6.19234 6.71635 7.13248 7.60935 7.62868 8.37508 8.60871 9.25915 10.88233 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034533 B = 0.003678 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.618568 B = 7611.060066 C = 7702.642893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.128 3.872 4 C 0.073 3.927 5 H 0.065 0.935 6 C -0.148 4.148 7 C -0.122 4.122 8 C -0.155 4.155 9 C 0.060 3.940 10 O -0.375 6.375 11 C 0.532 3.468 12 O -0.520 6.520 13 C -0.149 4.149 14 S -0.063 6.063 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 20.769 -4.050 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.353 5.353 3 C 0.005 3.995 4 C 0.015 3.985 5 H 0.083 0.917 6 C -0.186 4.186 7 C -0.160 4.160 8 C -0.193 4.193 9 C -0.016 4.016 10 O -0.294 6.294 11 C 0.320 3.680 12 O -0.395 6.395 13 C -0.300 4.300 14 S 0.164 5.836 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.317 20.605 -3.939 21.239 hybrid contribution -1.994 -0.808 -0.283 2.170 sum -5.311 19.797 -4.222 20.927 Atomic orbital electron populations 1.21719 0.79294 1.02453 1.02025 1.47764 1.07127 1.05256 1.75198 1.21436 0.98714 0.85245 0.94146 1.22626 0.85242 0.95829 0.94847 0.91736 1.22135 1.00783 0.98212 0.97455 1.21573 0.96944 1.01557 0.95915 1.22183 0.96759 0.99028 1.01312 1.22530 1.00523 0.94944 0.83652 1.87924 1.29323 1.87792 1.24332 1.20362 0.87920 0.84661 0.75033 1.90680 1.13736 1.86898 1.48170 1.23548 1.04488 0.97183 1.04737 1.85358 1.08186 0.93375 1.96709 1.22829 0.94300 0.92238 1.58951 0.90997 1.24989 0.95669 0.98350 0.94556 1.70015 1.11748 1.21714 1.46874 0.86226 0.80191 0.80288 0.78802 1.19946 1.20835 1.19933 0.92422 0.91127 0.91568 0.88449 0.90157 0.91059 0.90526 0.91521 0.91699 0.91213 0.91129 0.89100 0.93294 0.89251 0.89284 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.89 59.85 0.59 1.64 16 2 N -0.62 -9.30 2.84 -181.58 -0.52 -9.81 16 3 C 0.13 1.63 5.14 -4.05 -0.02 1.61 16 4 C 0.07 0.90 2.89 -26.68 -0.08 0.83 16 5 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.15 -1.43 5.42 -26.59 -0.14 -1.57 16 7 C -0.12 -1.07 6.03 -26.55 -0.16 -1.23 16 8 C -0.16 -1.26 6.14 -26.59 -0.16 -1.43 16 9 C 0.06 0.59 6.84 37.21 0.25 0.85 16 10 O -0.37 -4.55 9.97 -35.23 -0.35 -4.90 16 11 C 0.53 10.45 7.69 -10.98 -0.08 10.36 16 12 O -0.52 -11.99 15.44 5.56 0.09 -11.90 16 13 C -0.15 -3.13 4.71 36.00 0.17 -2.96 16 14 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 15 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 19 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 25 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 26 H 0.10 1.32 7.42 -51.93 -0.39 0.94 16 27 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.73 7.40 -51.91 -0.38 1.35 16 37 H 0.09 1.76 8.11 -51.91 -0.42 1.34 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -33.94 325.33 -7.93 -41.87 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.12 Total: -2.11 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.56 Total: -4.99 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.22 Total: -35.45 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.27 Total: -16.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.94 -7.93 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330526310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.496 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds