Wall clock time and date at job start Mon Mar 30 2020 20:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48490 * 109.47198 * 239.99926 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 119.99634 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21651 * 119.99713 * 0.02562 * 13 12 11 15 15 C 1.47276 * 120.00281 * 180.02562 * 13 12 11 16 16 C 1.38428 * 120.03254 * 180.02562 * 15 13 12 17 17 C 1.40660 * 118.27204 * 179.97438 * 16 15 13 18 18 C 1.38258 * 133.40076 * 179.97438 * 17 16 15 19 19 C 1.39680 * 106.99385 * 179.97438 * 18 17 16 20 20 C 1.35645 * 108.08311 * 0.02562 * 19 18 17 21 21 N 1.35912 * 109.06091 * 359.97438 * 20 19 18 22 22 C 1.36899 * 132.42588 * 180.02562 * 21 20 19 23 23 N 1.29799 * 121.47847 * 179.72908 * 22 21 20 24 24 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 26 26 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 27 27 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 28 28 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 29 29 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 30 30 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 31 31 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 32 32 H 1.08006 * 120.86829 * 359.97438 * 16 15 13 33 33 H 1.07995 * 126.50039 * 359.97438 * 18 17 16 34 34 H 1.08001 * 125.95383 * 179.97438 * 19 18 17 35 35 H 1.08004 * 125.46528 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.26199 * 359.97290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7868 -7.5936 0.0013 15 6 2.9398 -8.4909 0.0004 16 6 2.4790 -9.7962 0.0008 17 6 3.4254 -10.8368 0.0002 18 6 3.3214 -12.2155 0.0008 19 6 4.6227 -12.7231 -0.0010 20 6 5.4835 -11.6748 -0.0021 21 7 4.7724 -10.5165 -0.0016 22 6 5.1504 -9.2007 -0.0027 23 7 4.2736 -8.2437 -0.0071 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8531 -5.0451 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.3858 -5.9235 -0.0008 32 1 1.4204 -10.0101 0.0016 33 1 2.4074 -12.7907 0.0024 34 1 4.8958 -13.7680 -0.0007 35 1 6.5610 -11.7487 -0.0039 36 1 6.2017 -8.9534 -0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931967607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:06 Heat of formation + Delta-G solvation = 35.231713 kcal Electronic energy + Delta-G solvation = -19209.831629 eV Core-core repulsion = 16080.656757 eV Total energy + Delta-G solvation = -3129.174872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71655 -39.65046 -37.62373 -35.45562 -33.44852 -33.30566 -31.49282 -31.02889 -28.85281 -26.76525 -24.76058 -23.90327 -22.63213 -21.52015 -20.74078 -20.23124 -18.78225 -17.61461 -16.49416 -16.15856 -16.11885 -16.03660 -15.23658 -15.15862 -14.67955 -14.43966 -13.93805 -13.92117 -13.01111 -12.90761 -12.79052 -12.60293 -12.26002 -11.83024 -11.71326 -10.93746 -10.86338 -10.80253 -10.65913 -10.62424 -10.06184 -9.84397 -9.40000 -9.34720 -9.11947 -8.79355 -8.35529 -7.86470 -6.00335 -4.03324 0.12239 0.82589 2.17164 2.47479 2.60171 3.22766 3.33238 3.37773 3.40049 3.54448 3.67298 4.21168 4.37081 4.44872 4.48004 4.79985 4.94339 5.08389 5.26362 5.35293 5.38471 5.67327 5.74912 5.79041 5.85205 6.17401 6.17797 6.32170 6.47938 6.61709 6.70276 6.84140 7.01483 7.26048 7.64938 7.74623 7.77867 7.98450 8.31510 8.40218 9.03069 9.60596 11.10965 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048926 B = 0.002679 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.155567 B =10448.716185 C =10995.122232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.705 5.705 13 C 0.571 3.429 14 O -0.541 6.541 15 C 0.013 3.987 16 C -0.041 4.041 17 C 0.026 3.974 18 C -0.172 4.172 19 C -0.147 4.147 20 C -0.029 4.029 21 N -0.388 5.388 22 C 0.307 3.693 23 N -0.465 5.465 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.408 0.592 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -25.486 0.004 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.354 5.354 13 C 0.356 3.644 14 O -0.419 6.419 15 C -0.105 4.105 16 C -0.063 4.063 17 C -0.079 4.079 18 C -0.198 4.198 19 C -0.170 4.170 20 C -0.160 4.160 21 N -0.061 5.061 22 C 0.024 3.976 23 N -0.178 5.178 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.194 0.806 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.574 -24.279 -0.003 26.897 hybrid contribution 0.770 0.231 0.004 0.804 sum 12.344 -24.048 0.001 27.031 Atomic orbital electron populations 1.69958 1.06055 1.26788 1.50515 1.25034 0.94866 0.99296 0.95292 0.86632 0.79550 0.83071 0.78585 1.20244 1.21282 1.20250 1.21172 0.92976 0.90940 1.50996 0.92676 1.19026 0.93838 0.90815 0.97670 1.21894 0.99776 0.93164 1.01033 1.21736 0.91854 0.85011 1.02185 1.46050 1.11626 1.05242 1.72493 1.17419 0.86947 0.82580 0.77469 1.90827 1.15231 1.84680 1.51128 1.20946 0.89464 0.93618 1.06460 1.21707 1.00966 0.89676 0.93959 1.18922 0.82675 0.95110 1.11185 1.21181 0.98731 0.90441 1.09408 1.21069 0.92163 0.98885 1.04855 1.21995 0.98362 0.82445 1.13160 1.43186 1.08302 1.06862 1.47765 1.24806 1.00487 0.76445 0.95828 1.68180 1.02213 1.32168 1.15226 0.92876 0.96237 0.96251 0.92636 0.92628 0.91500 0.91492 0.75677 0.81827 0.83033 0.83024 0.80615 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.11 2.11 5.67 -4.04 -0.02 2.08 16 12 N -0.70 -11.33 5.55 -61.42 -0.34 -11.67 16 13 C 0.57 9.43 7.78 -12.59 -0.10 9.33 16 14 O -0.54 -10.46 16.34 5.23 0.09 -10.37 16 15 C 0.01 0.18 6.78 -82.44 -0.56 -0.38 16 16 C -0.04 -0.49 9.72 -38.60 -0.38 -0.87 16 17 C 0.03 0.27 6.78 -83.95 -0.57 -0.30 16 18 C -0.17 -1.46 10.98 -39.04 -0.43 -1.89 16 19 C -0.15 -0.98 10.80 -39.97 -0.43 -1.41 16 20 C -0.03 -0.18 11.61 -16.67 -0.19 -0.38 16 21 N -0.39 -3.41 2.95 -62.17 -0.18 -3.60 16 22 C 0.31 2.56 12.16 -89.23 -1.09 1.48 16 23 N -0.47 -5.39 9.59 -10.43 -0.10 -5.49 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.41 5.82 7.80 -40.82 -0.32 5.51 16 32 H 0.16 1.86 7.66 -52.48 -0.40 1.46 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.21 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -34.21 318.25 -8.97 -43.18 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.49 Total: 0.77 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -4.45 Total: -7.97 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.11 Total: -47.06 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.21 -8.97 -43.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.416 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds