Wall clock time and date at job start Mon Mar 30 2020 19:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29996 * 126.21258 * 2 1 4 4 O 1.21275 * 110.49596 * 180.02562 * 3 2 1 5 5 C 1.34048 * 109.74587 * 359.97438 * 4 3 2 6 6 N 1.37376 * 126.66204 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00590 * 0.03164 * 6 5 4 8 8 H 1.09004 * 109.46581 * 324.99784 * 7 6 5 9 9 C 1.52997 * 109.47195 * 204.99796 * 7 6 5 10 10 C 1.50701 * 109.47212 * 64.99546 * 9 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.50699 * 109.47310 * 84.99373 * 7 6 5 19 19 C 1.38232 * 119.99901 * 39.72716 * 18 7 6 20 20 C 1.38237 * 120.00227 * 179.80448 * 19 18 7 21 21 C 1.38239 * 119.99768 * 0.40665 * 20 19 18 22 22 C 1.38242 * 119.99786 * 359.85095 * 21 20 19 23 23 C 1.38233 * 120.00063 * 359.95930 * 22 21 20 24 24 N 1.32140 * 106.66742 * 0.24243 * 5 4 3 25 25 H 1.09003 * 109.47061 * 89.97515 * 1 2 3 26 26 H 1.08999 * 109.47231 * 209.97560 * 1 2 3 27 27 H 1.08993 * 109.47246 * 329.97813 * 1 2 3 28 28 H 0.97001 * 119.99648 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47153 * 304.99547 * 9 7 6 30 30 H 1.09001 * 109.46832 * 184.99738 * 9 7 6 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.00329 * 0.02562 * 19 18 7 33 33 H 1.08001 * 120.00485 * 180.23077 * 20 19 18 34 34 H 1.07993 * 120.00075 * 179.82746 * 21 20 19 35 35 H 1.07996 * 120.00086 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0488 0.0000 4 8 3.4424 0.7203 -0.0005 5 6 3.5366 -0.6168 -0.0003 6 7 4.6935 -1.3576 -0.0013 7 6 5.9946 -0.6843 -0.0019 8 1 5.9299 0.2304 -0.5911 9 6 7.0480 -1.6109 -0.6124 10 6 6.7235 -1.8528 -2.0640 11 1 5.8533 -1.3916 -2.5070 12 6 7.5383 -2.6623 -2.8269 13 7 8.5983 -3.2236 -2.2876 14 14 7.1365 -2.9617 -4.6264 15 1 5.9012 -2.2210 -4.9877 16 1 8.2624 -2.4871 -5.4705 17 1 6.9269 -4.4144 -4.8517 18 6 6.3847 -0.3437 1.4133 19 6 6.1309 -1.2397 2.4349 20 6 6.4923 -0.9290 3.7325 21 6 7.1000 0.2813 4.0097 22 6 7.3490 1.1796 2.9889 23 6 6.9911 0.8672 1.6907 24 7 2.3005 -1.0838 -0.0050 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5141 28 1 4.6489 -2.3266 -0.0014 29 1 7.0504 -2.5606 -0.0774 30 1 8.0307 -1.1462 -0.5323 31 1 9.1714 -3.7934 -2.8242 32 1 5.6534 -2.1840 2.2188 33 1 6.2974 -1.6306 4.5301 34 1 7.3799 0.5252 5.0238 35 1 7.8233 2.1253 3.2055 36 1 7.1859 1.5688 0.8931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336556708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:38 Heat of formation + Delta-G solvation = 89.479341 kcal Electronic energy + Delta-G solvation = -20498.462045 eV Core-core repulsion = 17371.639527 eV Total energy + Delta-G solvation = -3126.822518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.78821 -39.25566 -36.62056 -35.42653 -33.34883 -32.15420 -30.67339 -30.18480 -28.93383 -28.49352 -25.05107 -23.32848 -22.35456 -22.12019 -21.51608 -19.84331 -17.74093 -17.60746 -16.98314 -16.27626 -16.17339 -15.12773 -14.92070 -14.61191 -13.89562 -13.46345 -13.45834 -13.30269 -13.06933 -12.78225 -12.68622 -12.21079 -11.75023 -11.70677 -11.53003 -11.23181 -11.04331 -10.82692 -10.69576 -10.58744 -10.40854 -10.23597 -9.82666 -9.34274 -8.65026 -8.54742 -8.36445 -7.91630 -6.17023 -4.21473 1.61092 1.68067 1.89553 2.70312 2.85317 3.23247 3.32018 3.36503 3.84026 4.09350 4.34259 4.40509 4.93679 5.12325 5.15790 5.20474 5.24282 5.38996 5.48887 5.61540 5.64798 5.75618 5.78963 5.92317 6.15845 6.23288 6.31101 6.34730 6.45395 6.71292 6.74059 6.86917 7.09286 7.26802 7.35272 7.52692 7.70189 7.79505 8.12932 8.83943 8.86352 9.44854 10.93263 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.007406 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.952917 B = 3780.057224 C = 5811.934583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.414 5.414 4 O 0.028 5.972 5 C 0.448 3.552 6 N -0.634 5.634 7 C 0.188 3.812 8 H 0.087 0.913 9 C 0.025 3.975 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.108 4.108 24 N -0.558 5.558 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.432 0.568 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 5.537 9.292 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 N -0.141 5.141 4 O -0.015 6.015 5 C 0.138 3.862 6 N -0.283 5.283 7 C 0.084 3.916 8 H 0.105 0.895 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.090 4.090 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.126 4.126 24 N -0.306 5.306 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.274 0.726 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.635 6.067 9.227 13.425 hybrid contribution 0.220 -0.740 -1.017 1.277 sum -7.415 5.327 8.210 12.279 Atomic orbital electron populations 1.20022 0.83890 1.03912 1.03729 1.25347 0.99708 0.84106 0.98983 1.74481 0.88638 1.22887 1.28103 1.85313 1.22598 1.22375 1.71187 1.24354 0.89156 0.81730 0.90917 1.43699 0.99499 1.08360 1.76710 1.20541 0.82037 0.98243 0.90769 0.89465 1.19414 0.92372 0.93809 0.95635 1.21141 1.10844 1.29810 0.94634 0.92287 1.24967 0.94854 0.95542 0.98586 1.69956 1.14698 1.31710 1.36418 0.86525 0.78439 0.78061 0.84969 1.19723 1.20902 1.20897 1.20559 0.98041 0.94134 0.96248 1.20942 0.99533 0.99185 0.92424 1.21078 0.99539 0.97002 0.96565 1.21055 1.00265 0.94618 0.98838 1.21059 1.00551 0.99417 0.92991 1.21027 0.98631 0.96225 0.96725 1.72271 0.97386 1.27492 1.33497 0.89816 0.89540 0.90080 0.72630 0.95213 0.93955 0.92771 0.86311 0.86523 0.86652 0.86377 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 36.01 0.38 -0.27 16 2 C 0.19 3.21 8.20 -156.48 -1.28 1.92 16 3 N -0.41 -7.56 12.14 31.15 0.38 -7.18 16 4 O 0.03 0.53 10.90 17.06 0.19 0.72 16 5 C 0.45 8.28 9.05 -87.55 -0.79 7.49 16 6 N -0.63 -11.33 4.12 -57.12 -0.24 -11.56 16 7 C 0.19 3.49 2.31 -69.09 -0.16 3.33 16 8 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 9 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 10 C -0.53 -13.42 8.84 -34.44 -0.30 -13.72 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 14 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.09 -1.49 4.92 -104.63 -0.52 -2.00 16 19 C -0.10 -1.62 9.32 -39.58 -0.37 -1.99 16 20 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 21 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 23 C -0.11 -1.67 9.67 -39.58 -0.38 -2.05 16 24 N -0.56 -10.18 11.59 -13.05 -0.15 -10.34 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.43 7.48 8.72 -40.82 -0.36 7.13 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.12 1.81 7.71 -52.48 -0.40 1.40 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.76 8.04 -52.49 -0.42 1.33 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -29.51 318.97 -8.65 -38.17 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.51 Total: 5.28 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -4.84 Total: -11.55 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.73 Total: -53.18 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: 0.19 Total: 0.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.51 -8.65 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336556708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.646 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds