Wall clock time and date at job start Mon Mar 30 2020 20:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99463 * 2 1 4 4 H 1.08995 * 109.47397 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.46759 * 120.00264 * 3 2 1 6 6 C 1.53006 * 109.46923 * 294.99459 * 5 3 2 7 7 C 1.53001 * 109.47319 * 239.99423 * 3 2 1 8 8 C 1.50705 * 109.46649 * 65.00313 * 7 3 2 9 9 O 1.21286 * 119.99817 * 0.02562 * 8 7 3 10 10 N 1.34778 * 120.00113 * 179.97438 * 8 7 3 11 11 C 1.39235 * 120.00073 * 175.70812 * 10 8 7 12 12 C 1.39476 * 119.83483 * 215.02061 * 11 10 8 13 13 C 1.36378 * 120.17307 * 179.72198 * 12 11 10 14 14 C 1.40873 * 119.82270 * 0.57032 * 13 12 11 15 15 C 1.41145 * 120.16212 * 179.67803 * 14 13 12 16 16 H 1.08001 * 119.99981 * 214.80160 * 15 14 13 17 17 C 1.39905 * 120.00386 * 34.80841 * 15 14 13 18 18 N 1.30875 * 119.99256 * 355.55157 * 17 15 14 19 19 Si 1.86797 * 120.00261 * 175.55873 * 17 15 14 20 20 H 1.48502 * 109.47034 * 89.99898 * 19 17 15 21 21 H 1.48497 * 109.46859 * 209.99696 * 19 17 15 22 22 H 1.48494 * 109.46927 * 329.99612 * 19 17 15 23 23 C 1.40873 * 119.67026 * 359.70402 * 14 13 12 24 24 C 1.36371 * 119.83261 * 359.97438 * 23 14 13 25 25 H 1.07996 * 119.99568 * 179.97438 * 1 2 3 26 26 H 1.07993 * 120.00380 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00106 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47071 * 175.00000 * 5 3 2 29 29 H 1.08996 * 109.47790 * 54.99514 * 5 3 2 30 30 H 1.08996 * 109.47194 * 300.00096 * 6 5 3 31 31 H 1.09001 * 109.46974 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46805 * 60.00378 * 6 5 3 33 33 H 1.09000 * 109.47180 * 184.99896 * 7 3 2 34 34 H 1.08999 * 109.47371 * 305.01034 * 7 3 2 35 35 H 0.97000 * 119.99468 * 355.71390 * 10 8 7 36 36 H 1.08004 * 119.91253 * 0.02562 * 12 11 10 37 37 H 1.07993 * 120.08742 * 180.25363 * 13 12 11 38 38 H 0.97008 * 119.99402 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.08025 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.91812 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.0563 1.4307 2.4954 7 6 2.9432 1.3863 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8626 1.4000 -2.3632 10 7 2.6301 1.5039 -3.7001 11 6 1.8282 1.4543 -4.8372 12 6 2.2955 0.8211 -5.9888 13 6 1.5135 0.7635 -7.1047 14 6 0.2356 1.3562 -7.0959 15 6 -0.5770 1.3067 -8.2490 16 1 -1.2246 2.1369 -8.4892 17 6 -0.5435 0.1823 -9.0808 18 7 0.3035 -0.7856 -8.8386 19 14 -1.7075 0.0625 -10.5368 20 1 -1.0648 0.6598 -11.7348 21 1 -2.0217 -1.3642 -10.8032 22 1 -2.9613 0.7965 -10.2298 23 6 -0.2271 1.9989 -5.9309 24 6 0.5636 2.0426 -4.8207 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 3.5539 2.2879 1.2057 29 1 3.5905 0.5106 1.2953 30 1 1.4089 2.3064 2.4495 31 1 2.6830 1.4889 3.3853 32 1 1.4455 0.5291 2.5390 33 1 3.5539 2.2880 -1.2055 34 1 3.5906 0.5106 -1.2951 35 1 3.5921 1.5914 -3.7884 36 1 3.2772 0.3709 -5.9952 37 1 1.8751 0.2693 -7.9942 38 1 0.3270 -1.5651 -9.4156 39 1 -1.2056 2.4558 -5.9170 40 1 0.2101 2.5346 -3.9266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929401708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:39 Heat of formation + Delta-G solvation = -12.995614 kcal Electronic energy + Delta-G solvation = -20233.478985 eV Core-core repulsion = 17205.753163 eV Total energy + Delta-G solvation = -3027.725822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76250 -37.62705 -36.41881 -34.31376 -32.88708 -31.69971 -30.50317 -29.52601 -28.64294 -25.49156 -24.05047 -21.76055 -21.43350 -20.71078 -19.67498 -19.29764 -17.32141 -16.76256 -16.15237 -15.40190 -15.14266 -14.66607 -14.51486 -13.99459 -13.90230 -13.39426 -13.24194 -12.80024 -12.64504 -12.18847 -12.10507 -11.82759 -11.68819 -11.43553 -11.25695 -11.22510 -11.11539 -10.92610 -10.82870 -10.68843 -10.45129 -9.98057 -9.46897 -9.36453 -9.21232 -8.95023 -8.68374 -7.51293 -6.81648 -6.58981 -4.31279 2.58974 2.64327 3.06778 3.10452 3.12458 3.15987 3.41481 3.80812 4.00233 4.72279 4.76369 4.79626 4.95874 5.20839 5.24921 5.39007 5.49010 5.53313 5.67788 5.70604 5.82638 5.85516 5.88437 6.08426 6.17198 6.22352 6.30243 6.48982 6.80850 6.89531 6.97209 7.09751 7.10441 7.25534 7.33631 7.67148 7.79944 7.92719 8.09795 8.32375 8.36040 8.66131 8.84743 8.95768 9.04800 10.32102 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.003448 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.570573 B = 8118.845801 C = 8373.166003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.153 4.153 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.496 3.504 9 O -0.522 6.522 10 N -0.657 5.657 11 C 0.008 3.992 12 C -0.123 4.123 13 C -0.141 4.141 14 C 0.099 3.901 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.813 5.813 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.086 4.086 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.394 0.606 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.277 0.723 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 1.988 14.127 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.061 4.061 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.282 3.718 9 O -0.398 6.398 10 N -0.301 5.301 11 C -0.085 4.085 12 C -0.144 4.144 13 C -0.161 4.161 14 C 0.096 3.904 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.145 4.145 18 N -0.441 5.441 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.225 4.225 24 C -0.106 4.106 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.147 1.721 14.139 15.513 hybrid contribution 0.019 -0.332 -0.820 0.885 sum 6.166 1.389 13.318 14.742 Atomic orbital electron populations 1.23677 0.95941 1.01274 0.98847 1.22575 0.95984 0.96941 1.01635 1.20127 0.96524 0.97137 0.92358 0.90120 1.21542 0.97862 1.01753 0.94160 1.21758 0.99817 1.02195 0.97038 1.21700 0.98696 1.03782 0.93156 1.20598 0.89375 0.77307 0.84474 1.90685 1.14609 1.48356 1.86182 1.43074 1.09685 1.72292 1.05002 1.17288 0.94703 1.09461 0.87006 1.20324 0.99246 1.00783 0.94020 1.21188 0.93724 1.03431 0.97774 1.17713 0.91075 0.89787 0.91819 1.19483 1.21293 1.02388 1.06115 0.90686 1.25872 0.95536 0.95201 0.97940 1.69771 1.31524 1.06988 1.35783 0.86203 0.80923 0.78085 0.80793 1.19554 1.20333 1.18751 1.20809 0.99207 1.09125 0.93388 1.20391 0.93624 0.98919 0.97687 0.89331 0.88639 0.88288 0.91965 0.91957 0.92829 0.93102 0.92369 0.89288 0.89267 0.77310 0.89200 0.85098 0.91215 0.88702 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 13.22 29.01 0.38 -1.86 16 2 C -0.15 -1.99 6.76 -36.03 -0.24 -2.23 16 3 C -0.04 -0.49 1.82 -91.77 -0.17 -0.66 16 4 H 0.08 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.12 -1.02 5.39 -26.73 -0.14 -1.17 16 6 C -0.15 -1.29 9.73 37.16 0.36 -0.93 16 7 C -0.13 -1.54 5.17 -27.88 -0.14 -1.68 16 8 C 0.50 8.40 7.41 -10.98 -0.08 8.32 16 9 O -0.52 -10.82 11.59 5.55 0.06 -10.75 16 10 N -0.66 -11.50 5.30 -9.74 -0.05 -11.55 16 11 C 0.01 0.17 6.31 -83.57 -0.53 -0.35 16 12 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 13 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 14 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 15 C -0.46 -12.51 9.02 -37.86 -0.34 -12.85 16 16 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.45 10.60 55.55 0.59 -20.86 16 19 Si 0.91 19.26 29.56 -169.99 -5.03 14.24 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 24 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 25 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.10 1.39 7.83 -52.49 -0.41 0.98 16 27 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 5.37 8.82 -40.82 -0.36 5.01 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.09 2.33 8.06 -52.48 -0.42 1.90 16 40 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -30.17 332.23 -8.44 -38.60 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.97 Total: 10.33 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -3.05 Total: -25.02 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.54 Total: -32.41 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.75 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.17 -8.44 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929401708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.608 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds