Wall clock time and date at job start Mon Mar 30 2020 19:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36020 * 120.34113 * 2 1 4 4 C 1.40477 * 119.69735 * 179.70993 * 3 2 1 5 5 C 1.34947 * 120.29723 * 0.54230 * 4 3 2 6 6 N 1.36487 * 120.60984 * 359.44591 * 5 4 3 7 7 C 1.36837 * 132.56756 * 180.27686 * 6 5 4 8 8 C 1.50696 * 126.41178 * 0.02562 * 7 6 5 9 9 N 1.46906 * 109.47058 * 274.99717 * 8 7 6 10 10 C 1.46892 * 111.00009 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47067 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47374 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47505 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99597 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99958 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99587 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00022 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47095 * 90.00446 * 17 15 13 19 19 H 1.48497 * 109.47052 * 209.99929 * 17 15 13 20 20 H 1.48496 * 109.47525 * 330.00225 * 17 15 13 21 21 C 1.35104 * 107.17471 * 180.02562 * 7 6 5 22 22 N 1.33509 * 108.63028 * 359.97438 * 21 7 6 23 23 C 1.32556 * 109.16083 * 0.02562 * 22 21 7 24 24 H 1.08999 * 109.47592 * 270.02737 * 1 2 3 25 25 H 1.09005 * 109.46823 * 30.02649 * 1 2 3 26 26 H 1.08997 * 109.47529 * 150.02156 * 1 2 3 27 27 H 1.08008 * 120.15025 * 359.97392 * 3 2 1 28 28 H 1.08003 * 119.85100 * 180.26643 * 4 3 2 29 29 H 1.08002 * 119.69756 * 179.73410 * 5 4 3 30 30 H 1.09001 * 109.47300 * 34.99247 * 8 7 6 31 31 H 1.08998 * 109.47456 * 154.99577 * 8 7 6 32 32 H 1.00896 * 110.99769 * 56.04126 * 9 8 7 33 33 H 1.08994 * 109.47385 * 300.00062 * 10 9 8 34 34 H 1.09004 * 109.47219 * 60.00455 * 10 9 8 35 35 H 1.09001 * 109.47122 * 299.99921 * 11 10 9 36 36 H 1.08999 * 109.47223 * 59.99974 * 11 10 9 37 37 H 1.09006 * 109.47529 * 300.00693 * 12 11 10 38 38 H 1.08999 * 109.46979 * 59.99810 * 12 11 10 39 39 H 0.96998 * 119.99664 * 179.97438 * 16 15 13 40 40 H 1.08004 * 125.68155 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1739 0.0000 4 6 3.5987 1.1581 0.0062 5 6 4.2664 -0.0146 0.0011 6 7 3.5895 -1.1998 0.0012 7 6 4.0054 -2.5034 0.0017 8 6 5.4327 -2.9869 0.0027 9 7 5.9362 -3.0299 -1.3767 10 6 7.3283 -3.4972 -1.4147 11 6 7.8161 -3.5292 -2.8645 12 6 9.2659 -4.0165 -2.9042 13 6 9.7466 -4.0474 -4.3321 14 1 9.0842 -3.7496 -5.1314 15 6 11.0318 -4.4568 -4.6181 16 7 11.4511 -4.4842 -5.8643 17 14 12.1772 -4.9725 -3.2356 18 1 12.0330 -6.4301 -2.9910 19 1 13.5804 -4.6711 -3.6170 20 1 11.8290 -4.2263 -1.9998 21 6 2.8970 -3.2758 0.0010 22 7 1.8237 -2.4817 0.0007 23 6 2.2187 -1.2164 0.0006 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6620 2.1139 -0.0004 28 1 4.1468 2.0887 0.0105 29 1 5.3464 -0.0154 0.0015 30 1 6.0466 -2.3060 0.5924 31 1 5.4778 -3.9855 0.4373 32 1 5.8449 -2.1297 -1.8231 33 1 7.9550 -2.8196 -0.8349 34 1 7.3869 -4.4994 -0.9899 35 1 7.1894 -4.2071 -3.4439 36 1 7.7575 -2.5273 -3.2897 37 1 9.8930 -3.3390 -2.3246 38 1 9.3241 -5.0185 -2.4790 39 1 12.3553 -4.7718 -6.0655 40 1 2.8818 -4.3558 0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174347708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:23 Heat of formation + Delta-G solvation = 72.999172 kcal Electronic energy + Delta-G solvation = -19733.170237 eV Core-core repulsion = 16741.466179 eV Total energy + Delta-G solvation = -2991.704057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.00843 -37.84692 -36.65958 -34.77985 -33.59870 -31.78675 -31.12732 -29.77499 -27.33498 -26.95908 -24.66667 -23.12058 -22.59839 -22.05398 -20.79321 -20.01887 -17.55153 -17.03986 -16.74545 -16.23461 -15.98363 -15.73906 -14.67061 -14.52929 -14.27885 -14.02611 -13.72309 -13.50663 -13.42302 -12.95239 -12.63895 -12.56509 -12.11286 -12.02457 -11.93365 -11.79504 -11.66508 -11.00700 -10.83598 -10.78634 -10.23660 -9.98264 -9.76756 -9.63920 -9.19183 -8.94268 -8.54531 -8.41046 -7.89460 -6.04591 -4.02578 0.49805 1.04447 2.36410 2.67606 3.29625 3.29732 3.36789 3.39704 4.00257 4.19116 4.29663 4.44275 4.46449 4.55227 4.70049 4.78185 4.99473 5.23473 5.24771 5.29102 5.34209 5.40321 5.42623 5.58819 5.64265 5.69896 5.75550 5.83787 6.04808 6.09644 6.28114 6.46629 6.50735 6.51575 6.86224 6.88016 7.07877 7.30836 7.34926 7.44883 7.71489 7.79274 8.54379 9.00959 9.57743 11.09024 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.002861 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.063123 B = 9783.527431 C =10011.303210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.044 4.044 3 C -0.114 4.114 4 C -0.138 4.138 5 C 0.050 3.950 6 N -0.356 5.356 7 C -0.058 4.058 8 C 0.139 3.861 9 N -0.685 5.685 10 C 0.056 3.944 11 C -0.099 4.099 12 C -0.012 4.012 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.052 3.948 22 N -0.491 5.491 23 C 0.221 3.779 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.033 0.967 31 H 0.099 0.901 32 H 0.337 0.663 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.263 0.737 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.766 11.497 16.378 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.046 4.046 3 C -0.137 4.137 4 C -0.159 4.159 5 C -0.072 4.072 6 N -0.028 5.028 7 C -0.171 4.171 8 C 0.009 3.991 9 N -0.316 5.316 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.050 4.050 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.100 4.100 22 N -0.210 5.210 23 C -0.022 4.022 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.607 10.499 16.144 27.483 hybrid contribution 2.228 0.764 0.880 2.514 sum -17.380 11.264 17.024 26.809 Atomic orbital electron populations 1.20652 0.88990 1.03554 1.02867 1.19026 0.96903 0.88433 1.00274 1.20917 0.93695 0.97838 1.01274 1.20768 0.94783 0.97105 1.03249 1.21571 0.98693 0.83462 1.03484 1.42705 1.08736 1.05732 1.45654 1.21197 0.98228 0.80904 1.16733 1.20254 0.86811 1.01057 0.91028 1.60603 1.22182 1.33599 1.15184 1.22199 0.85669 0.99742 0.99588 1.21447 0.98352 1.01212 0.92735 1.19538 0.91858 0.95671 0.97943 1.21147 0.98453 1.44488 0.91694 0.91034 1.25051 0.98074 0.95118 0.95374 1.69919 1.18060 1.48322 1.18018 0.86756 0.80024 0.79316 0.83028 1.20254 1.21428 1.19131 1.22312 0.86469 0.99931 1.01338 1.70724 1.29870 0.97961 1.22474 1.20712 0.79993 0.94555 1.06946 0.90663 0.90977 0.90320 0.84175 0.83241 0.82409 0.94893 0.88273 0.84601 0.95701 0.91038 0.91795 0.93111 0.96892 0.96972 0.92751 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.03 36.00 0.36 -0.43 16 2 C -0.04 -0.44 5.90 -104.40 -0.62 -1.05 16 3 C -0.11 -0.87 9.72 -39.54 -0.38 -1.26 16 4 C -0.14 -1.03 9.99 -39.91 -0.40 -1.43 16 5 C 0.05 0.47 10.85 -16.65 -0.18 0.29 16 6 N -0.36 -4.27 2.95 -58.46 -0.17 -4.44 16 7 C -0.06 -0.72 6.54 -81.48 -0.53 -1.25 16 8 C 0.14 1.59 6.12 -4.97 -0.03 1.56 16 9 N -0.68 -9.44 6.49 -115.06 -0.75 -10.19 16 10 C 0.06 0.88 5.68 -3.83 -0.02 0.85 16 11 C -0.10 -1.96 5.41 -26.73 -0.14 -2.10 16 12 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 13 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 17 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.05 0.67 11.75 -17.94 -0.21 0.46 16 22 N -0.49 -6.96 11.31 -12.78 -0.14 -7.11 16 23 C 0.22 2.85 7.52 -156.04 -1.17 1.68 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 28 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 29 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.34 4.58 8.72 -39.29 -0.34 4.24 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -33.60 336.80 -9.95 -43.54 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.19 Total: -0.02 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -3.87 Total: -16.59 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.29 Total: -49.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.60 -9.95 -43.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174347708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.543 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds