Wall clock time and date at job start Mon Mar 30 2020 19:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36020 * 120.34113 * 2 1 4 4 C 1.40477 * 119.69735 * 179.70993 * 3 2 1 5 5 C 1.34947 * 120.29723 * 0.54230 * 4 3 2 6 6 N 1.36487 * 120.60984 * 359.44591 * 5 4 3 7 7 C 1.36837 * 132.56756 * 180.27686 * 6 5 4 8 8 C 1.50696 * 126.41178 * 0.02562 * 7 6 5 9 9 N 1.46906 * 109.47058 * 274.99717 * 8 7 6 10 10 C 1.46892 * 111.00009 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47067 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47374 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47505 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99597 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99958 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99587 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00022 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47095 * 90.00446 * 17 15 13 19 19 H 1.48497 * 109.47052 * 209.99929 * 17 15 13 20 20 H 1.48496 * 109.47525 * 330.00225 * 17 15 13 21 21 C 1.35104 * 107.17471 * 180.02562 * 7 6 5 22 22 N 1.33509 * 108.63028 * 359.97438 * 21 7 6 23 23 C 1.32556 * 109.16083 * 0.02562 * 22 21 7 24 24 H 1.08999 * 109.47592 * 270.02737 * 1 2 3 25 25 H 1.09005 * 109.46823 * 30.02649 * 1 2 3 26 26 H 1.08997 * 109.47529 * 150.02156 * 1 2 3 27 27 H 1.08008 * 120.15025 * 359.97392 * 3 2 1 28 28 H 1.08003 * 119.85100 * 180.26643 * 4 3 2 29 29 H 1.08002 * 119.69756 * 179.73410 * 5 4 3 30 30 H 1.09001 * 109.47300 * 34.99247 * 8 7 6 31 31 H 1.08998 * 109.47456 * 154.99577 * 8 7 6 32 32 H 1.00896 * 110.99769 * 56.04126 * 9 8 7 33 33 H 1.08994 * 109.47385 * 300.00062 * 10 9 8 34 34 H 1.09004 * 109.47219 * 60.00455 * 10 9 8 35 35 H 1.09001 * 109.47122 * 299.99921 * 11 10 9 36 36 H 1.08999 * 109.47223 * 59.99974 * 11 10 9 37 37 H 1.09006 * 109.47529 * 300.00693 * 12 11 10 38 38 H 1.08999 * 109.46979 * 59.99810 * 12 11 10 39 39 H 0.96998 * 119.99664 * 179.97438 * 16 15 13 40 40 H 1.08004 * 125.68155 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1739 0.0000 4 6 3.5987 1.1581 0.0062 5 6 4.2664 -0.0146 0.0011 6 7 3.5895 -1.1998 0.0012 7 6 4.0054 -2.5034 0.0017 8 6 5.4327 -2.9869 0.0027 9 7 5.9362 -3.0299 -1.3767 10 6 7.3283 -3.4972 -1.4147 11 6 7.8161 -3.5292 -2.8645 12 6 9.2659 -4.0165 -2.9042 13 6 9.7466 -4.0474 -4.3321 14 1 9.0842 -3.7496 -5.1314 15 6 11.0318 -4.4568 -4.6181 16 7 11.4511 -4.4842 -5.8643 17 14 12.1772 -4.9725 -3.2356 18 1 12.0330 -6.4301 -2.9910 19 1 13.5804 -4.6711 -3.6170 20 1 11.8290 -4.2263 -1.9998 21 6 2.8970 -3.2758 0.0010 22 7 1.8237 -2.4817 0.0007 23 6 2.2187 -1.2164 0.0006 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6620 2.1139 -0.0004 28 1 4.1468 2.0887 0.0105 29 1 5.3464 -0.0154 0.0015 30 1 6.0466 -2.3060 0.5924 31 1 5.4778 -3.9855 0.4373 32 1 5.8449 -2.1297 -1.8231 33 1 7.9550 -2.8196 -0.8349 34 1 7.3869 -4.4994 -0.9899 35 1 7.1894 -4.2071 -3.4439 36 1 7.7575 -2.5273 -3.2897 37 1 9.8930 -3.3390 -2.3246 38 1 9.3241 -5.0185 -2.4790 39 1 12.3553 -4.7718 -6.0655 40 1 2.8818 -4.3558 0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174347708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:23 Heat of formation + Delta-G solvation = 51.808977 kcal Electronic energy + Delta-G solvation = -19734.089113 eV Core-core repulsion = 16741.466179 eV Total energy + Delta-G solvation = -2992.622933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.81883 -38.59051 -37.82752 -35.78214 -35.20343 -33.56842 -31.83744 -30.97559 -28.46404 -27.96809 -25.89886 -23.91699 -23.68873 -23.24218 -22.04851 -21.30020 -18.92964 -18.30398 -17.78864 -17.11907 -16.94062 -16.57494 -16.38317 -15.60693 -15.42904 -15.23598 -14.73557 -14.56152 -14.48334 -14.12356 -13.74782 -13.51321 -13.43852 -13.30613 -12.79331 -12.71545 -12.60482 -12.56455 -12.49674 -11.79714 -11.65224 -11.52427 -11.42179 -11.30832 -11.08657 -10.76655 -9.76393 -9.44641 -8.69019 -8.29589 -6.34362 -0.18319 0.28063 1.36718 1.38624 1.50674 1.60080 1.83420 2.36620 2.53362 3.05755 3.21197 3.32547 3.51913 3.69037 3.89684 3.99995 4.07613 4.18127 4.22835 4.33841 4.54262 4.56024 4.66589 4.70521 4.75936 4.79938 4.87750 4.96271 5.03405 5.08031 5.10697 5.20180 5.36317 5.49779 5.59787 5.60350 5.65896 5.67416 5.97727 6.12103 6.26968 6.31451 6.74370 6.84929 7.30293 8.87635 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.002861 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.063123 B = 9783.527431 C =10011.303210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.073 4.073 3 C -0.098 4.098 4 C -0.127 4.127 5 C 0.025 3.975 6 N -0.360 5.360 7 C -0.070 4.070 8 C 0.147 3.853 9 N -0.693 5.693 10 C 0.071 3.929 11 C -0.092 4.092 12 C -0.009 4.009 13 C -0.536 4.536 14 H 0.026 0.974 15 C -0.001 4.001 16 N -0.954 5.954 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.242 1.242 21 C 0.032 3.968 22 N -0.529 5.529 23 C 0.202 3.798 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.176 0.824 28 H 0.187 0.813 29 H 0.175 0.825 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.337 0.663 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.266 0.734 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.370 13.178 18.958 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.148 4.148 5 C -0.096 4.096 6 N -0.032 5.032 7 C -0.183 4.183 8 C 0.018 3.982 9 N -0.324 5.324 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.047 4.047 13 C -0.574 4.574 14 H 0.045 0.955 15 C -0.197 4.197 16 N -0.595 5.595 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.165 1.165 21 C -0.120 4.120 22 N -0.250 5.250 23 C -0.041 4.041 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.194 0.806 28 H 0.204 0.796 29 H 0.193 0.807 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.232 12.192 18.737 29.489 hybrid contribution 2.015 0.388 -0.024 2.052 sum -17.217 12.580 18.714 28.370 Atomic orbital electron populations 1.20652 0.87851 1.03733 1.03337 1.19439 0.98040 0.88256 1.01849 1.21420 0.94059 0.98371 0.98280 1.21313 0.94972 0.97825 1.00656 1.22127 0.99816 0.83227 1.04461 1.42849 1.08650 1.06315 1.45392 1.21255 0.98303 0.81295 1.17494 1.20232 0.86350 1.01990 0.89656 1.60516 1.21059 1.33845 1.17010 1.21922 0.86784 1.00733 0.96307 1.21267 0.95890 1.00082 0.95735 1.19483 0.94212 0.96515 0.94492 1.21537 0.98207 1.44142 0.93482 0.95540 1.26120 1.00147 0.95063 0.98382 1.70088 1.18851 1.49793 1.20799 0.85562 0.77122 0.79492 0.79862 1.19146 1.21068 1.16509 1.22627 0.86789 1.00702 1.01861 1.70666 1.30827 0.99066 1.24402 1.21254 0.80855 0.95077 1.06916 0.90039 0.88432 0.92437 0.80615 0.79630 0.80744 0.93398 0.87332 0.84600 0.94277 0.90320 0.93602 0.93769 0.95874 0.96044 0.92503 0.79118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.03 71.23 0.71 -0.69 16 2 C -0.07 -1.37 5.90 -19.72 -0.12 -1.49 16 3 C -0.10 -1.19 9.72 22.30 0.22 -0.98 16 4 C -0.13 -1.46 9.99 22.06 0.22 -1.24 16 5 C 0.03 0.41 10.85 83.21 0.90 1.32 16 6 N -0.36 -8.36 2.95 -338.88 -1.00 -9.36 16 7 C -0.07 -1.71 6.54 41.05 0.27 -1.44 16 8 C 0.15 3.12 6.12 85.55 0.52 3.65 16 9 N -0.69 -18.11 6.49 -517.94 -3.36 -21.48 16 10 C 0.07 2.05 5.68 86.31 0.49 2.54 16 11 C -0.09 -3.55 5.41 30.59 0.17 -3.39 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 13 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 14 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 15 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 16 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 17 Si 0.96 44.13 27.47 68.60 1.88 46.01 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 21 C 0.03 0.85 11.75 83.72 0.98 1.84 16 22 N -0.53 -15.56 11.31 -194.35 -2.20 -17.76 16 23 C 0.20 5.21 7.52 134.11 1.01 6.21 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 0.83 8.09 -2.38 -0.02 0.81 16 26 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 27 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 28 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.34 8.77 8.72 -89.70 -0.78 7.99 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.02 1.02 7.20 -2.38 -0.02 1.01 16 38 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.19 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -75.67 336.80 2.02 -73.65 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.18 Total: 14.25 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 6.21 Total: -24.78 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -6.26 Total: -109.13 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -75.67 2.02 -73.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174347708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.463 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds