Wall clock time and date at job start Mon Mar 30 2020 20:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00246 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00094 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47492 * 180.02562 * 14 12 2 16 16 H 1.09000 * 115.54805 * 29.32995 * 15 14 12 17 17 C 1.52995 * 117.49647 * 243.62326 * 15 14 12 18 18 C 1.52994 * 117.49613 * 175.00277 * 15 14 12 19 19 H 1.09004 * 117.49814 * 214.98017 * 18 15 14 20 20 C 1.50693 * 117.50322 * 359.97438 * 18 15 14 21 21 C 1.38239 * 120.00180 * 59.72898 * 20 18 15 22 22 C 1.38230 * 120.00141 * 179.81079 * 21 20 18 23 23 C 1.38233 * 120.00037 * 0.39819 * 22 21 20 24 24 C 1.38235 * 120.00193 * 359.85250 * 23 22 21 25 25 C 1.38231 * 119.99939 * 359.96054 * 24 23 22 26 26 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 28 28 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 30 30 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 31 31 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46865 * 300.00571 * 14 12 2 33 33 H 1.09004 * 109.46641 * 59.99818 * 14 12 2 34 34 H 1.08994 * 117.50248 * 0.02562 * 17 15 14 35 35 H 1.09003 * 117.49529 * 145.01938 * 17 15 14 36 36 H 1.07997 * 119.99491 * 359.97438 * 21 20 18 37 37 H 1.08005 * 120.00066 * 180.22754 * 22 21 20 38 38 H 1.08000 * 119.99860 * 179.83232 * 23 22 21 39 39 H 1.07999 * 120.00424 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.00219 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 1 3.3369 -3.4350 0.4843 17 6 2.3805 -4.5650 -1.2123 18 6 1.8112 -5.0506 0.1222 19 1 2.3944 -5.7817 0.6821 20 6 0.3148 -5.1926 0.2305 21 6 -0.4995 -4.7172 -0.7804 22 6 -1.8719 -4.8509 -0.6829 23 6 -2.4304 -5.4527 0.4292 24 6 -1.6164 -5.9234 1.4425 25 6 -0.2438 -5.7932 1.3432 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6084 2.0285 0.5138 30 1 3.1500 1.1384 0.5139 31 1 4.0302 4.4439 -0.8505 32 1 0.7591 -2.5294 0.8919 33 1 0.7585 -2.5306 -0.8881 34 1 1.6730 -4.3481 -2.0125 35 1 3.3384 -4.9766 -1.5304 36 1 -0.0633 -4.2436 -1.6475 37 1 -2.5079 -4.4828 -1.4744 38 1 -3.5028 -5.5548 0.5066 39 1 -2.0528 -6.3932 2.3115 40 1 0.3922 -6.1606 2.1351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342395435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:04 Heat of formation + Delta-G solvation = -8.149924 kcal Electronic energy + Delta-G solvation = -20490.615622 eV Core-core repulsion = 17463.099924 eV Total energy + Delta-G solvation = -3027.515697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11209 -40.16311 -37.89944 -36.53971 -34.74441 -31.95573 -31.56211 -30.85382 -29.09796 -27.25009 -24.95995 -24.65345 -23.41286 -22.02798 -20.88791 -19.91740 -18.71783 -17.93286 -17.73946 -17.05088 -16.62908 -16.28554 -15.94096 -15.77192 -15.22734 -14.72939 -14.57476 -14.16793 -14.08318 -13.90533 -13.68054 -13.46005 -13.36514 -13.17583 -12.90265 -12.81186 -12.57344 -12.34589 -12.21297 -11.82500 -11.75504 -11.72023 -11.42028 -10.93884 -10.64818 -10.56359 -9.72885 -9.42995 -9.37170 -8.23141 -6.38303 0.47775 0.58540 1.35568 1.38889 1.49256 1.84405 2.30900 2.44130 2.73215 3.06040 3.20157 3.58875 3.67402 3.91143 3.99308 4.11437 4.22176 4.30972 4.37287 4.39275 4.52338 4.61782 4.64576 4.69567 4.78898 4.81572 4.91312 4.95859 5.03233 5.09254 5.21731 5.23536 5.24862 5.32358 5.55627 5.67932 5.71887 5.80715 5.83865 6.05419 6.20027 6.68632 6.78803 7.27540 7.49004 8.84069 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.003952 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.587334 B = 7084.003866 C = 7319.030388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.495 3.505 13 O -0.596 6.596 14 C -0.085 4.085 15 C -0.142 4.142 16 H 0.095 0.905 17 C -0.168 4.168 18 C -0.097 4.097 19 H 0.125 0.875 20 C -0.060 4.060 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.023 0.977 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -19.954 1.863 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.284 3.716 13 O -0.478 6.478 14 C -0.125 4.125 15 C -0.161 4.161 16 H 0.113 0.887 17 C -0.205 4.205 18 C -0.115 4.115 19 H 0.143 0.857 20 C -0.060 4.060 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.202 -19.765 1.918 23.846 hybrid contribution 0.700 0.857 -0.668 1.293 sum -12.502 -18.908 1.250 22.702 Atomic orbital electron populations 1.21897 0.77987 1.03789 1.02413 1.48195 1.08338 1.06472 1.71357 1.18780 0.91090 0.80410 0.96081 1.21698 1.36902 1.06585 0.93009 0.92950 1.25882 0.94830 0.96381 1.02121 1.70051 1.38952 1.14797 1.33104 0.85393 0.78141 0.78212 0.78931 1.18679 1.20544 1.19768 1.21358 0.87879 0.86623 0.75723 1.90610 1.16659 1.88109 1.52413 1.21157 0.97561 0.88703 1.05060 1.22052 0.99932 0.89654 1.04417 0.88650 1.23291 1.03186 1.02597 0.91432 1.21237 0.92509 0.96535 1.01260 0.85713 1.19217 0.92937 0.98708 0.95170 1.21249 0.94162 1.00577 0.99013 1.21391 0.94724 0.99142 0.98872 1.21455 1.00909 0.98516 0.94014 1.21418 0.93338 0.99775 0.99628 1.21191 0.95795 0.99810 0.97511 0.92287 0.88708 0.91063 0.95867 0.98545 0.92364 0.87449 0.87578 0.87763 0.87864 0.85914 0.84541 0.84219 0.84184 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.53 10.29 127.77 1.31 3.84 16 2 N -0.61 -27.01 2.86 -851.11 -2.43 -29.44 16 3 C 0.26 14.40 5.20 85.63 0.45 14.84 16 4 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.39 5.46 84.65 0.46 0.86 16 7 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.49 21.42 7.67 87.66 0.67 22.09 16 13 O -0.60 -32.02 15.14 -3.03 -0.05 -32.07 16 14 C -0.09 -2.53 3.18 29.85 0.09 -2.44 16 15 C -0.14 -4.02 5.41 -10.80 -0.06 -4.08 16 16 H 0.10 3.24 7.30 -2.39 -0.02 3.22 16 17 C -0.17 -3.93 9.51 30.59 0.29 -3.64 16 18 C -0.10 -2.07 6.04 -11.55 -0.07 -2.14 16 19 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 20 C -0.06 -1.20 4.97 -19.86 -0.10 -1.30 16 21 C -0.13 -2.51 7.86 22.27 0.18 -2.34 16 22 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 24 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 25 C -0.13 -2.20 9.74 22.27 0.22 -1.98 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 2.20 6.44 -2.39 -0.02 2.18 16 28 H 0.07 2.15 7.89 -2.39 -0.02 2.13 16 29 H 0.02 1.31 7.89 -2.38 -0.02 1.29 16 30 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.11 2.76 7.28 -2.39 -0.02 2.74 16 33 H 0.11 2.75 6.17 -2.38 -0.01 2.74 16 34 H 0.10 2.25 6.08 -2.39 -0.01 2.24 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.12 2.28 5.19 -2.91 -0.02 2.27 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -75.42 331.46 5.22 -70.21 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.03 Total: 13.99 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.36 Total: -13.35 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.15 Total: -86.38 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.05 Total: -32.07 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.42 5.22 -70.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342395435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.057 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds