Wall clock time and date at job start Mon Mar 30 2020 20:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 108.74079 * 2 1 4 4 C 1.54170 * 108.85616 * 241.54220 * 2 1 3 5 5 C 1.53824 * 111.96789 * 197.68356 * 4 2 1 6 6 C 1.50816 * 111.62323 * 319.03955 * 5 4 2 7 7 N 1.47632 * 108.05103 * 95.05773 * 6 5 4 8 8 C 1.46897 * 110.99635 * 150.35053 * 7 6 5 9 9 C 1.53001 * 109.46958 * 204.68205 * 8 7 6 10 10 C 1.53006 * 109.47376 * 174.84141 * 9 8 7 11 11 S 1.81000 * 109.47169 * 180.02562 * 10 9 8 12 12 C 1.76199 * 99.99686 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00450 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00057 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99802 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47266 * 90.00348 * 16 14 12 18 18 H 1.48504 * 109.47263 * 210.00072 * 16 14 12 19 19 H 1.48507 * 109.47387 * 330.00057 * 16 14 12 20 20 C 1.39780 * 114.75918 * 277.19767 * 7 6 5 21 21 C 1.50747 * 108.85391 * 118.45342 * 2 1 3 22 22 H 1.09000 * 109.47120 * 301.54940 * 1 2 3 23 23 H 1.09003 * 109.47030 * 61.55178 * 1 2 3 24 24 H 1.09000 * 109.47083 * 181.54735 * 1 2 3 25 25 H 0.96705 * 113.99766 * 298.45283 * 3 2 1 26 26 H 1.09003 * 108.97565 * 318.31861 * 4 2 1 27 27 H 1.08992 * 108.98329 * 77.03751 * 4 2 1 28 28 H 1.09003 * 109.04797 * 79.59521 * 5 4 2 29 29 H 1.08999 * 109.04621 * 198.56042 * 5 4 2 30 30 H 1.09000 * 109.74193 * 335.41906 * 6 5 4 31 31 H 1.09000 * 109.74682 * 214.70070 * 6 5 4 32 32 H 1.08994 * 109.47672 * 84.68235 * 8 7 6 33 33 H 1.08999 * 109.47600 * 324.67730 * 8 7 6 34 34 H 1.08997 * 109.47197 * 54.83763 * 9 8 7 35 35 H 1.09001 * 109.47434 * 294.83752 * 9 8 7 36 36 H 1.08997 * 109.47266 * 59.99664 * 10 9 8 37 37 H 1.09011 * 109.46541 * 299.99982 * 10 9 8 38 38 H 0.96995 * 119.99768 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.01902 * 182.86662 * 20 7 6 40 40 H 1.09004 * 109.01827 * 301.68824 * 20 7 6 41 41 H 1.09003 * 109.54782 * 93.96126 * 21 2 1 42 42 H 1.09002 * 109.62069 * 333.73283 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9891 1.3532 0.0000 4 6 2.0283 -0.6952 -1.2827 5 6 3.5005 -1.1264 -1.1688 6 6 4.3363 -0.0742 -0.4841 7 7 4.4210 -0.4183 0.9491 8 6 5.6824 0.0588 1.5313 9 6 6.0319 -0.7894 2.7558 10 6 7.4069 -0.3778 3.2859 11 16 7.8206 -1.3818 4.7339 12 6 9.4047 -0.7166 5.1249 13 1 9.8215 0.0761 4.5213 14 6 10.1169 -1.2113 6.2088 15 7 11.3000 -0.7140 6.5012 16 14 9.3956 -2.5817 7.2533 17 1 9.8085 -3.8961 6.6991 18 1 9.8911 -2.4547 8.6474 19 1 7.9138 -2.4840 7.2437 20 6 3.3276 -0.0054 1.7159 21 6 2.0172 -0.6797 1.2543 22 1 -0.3633 0.5377 0.8758 23 1 -0.3633 0.4896 -0.9036 24 1 -0.3633 -1.0273 0.0278 25 1 1.7169 1.8609 -0.7767 26 1 1.4143 -1.5762 -1.4697 27 1 1.9241 -0.0077 -2.1219 28 1 3.5566 -2.0529 -0.5973 29 1 3.8985 -1.3005 -2.1684 30 1 3.8670 0.9026 -0.6012 31 1 5.3359 -0.0576 -0.9185 32 1 5.5732 1.1011 1.8306 33 1 6.4788 -0.0254 0.7919 34 1 6.0511 -1.8424 2.4749 35 1 5.2821 -0.6340 3.5316 36 1 7.3878 0.6751 3.5668 37 1 8.1568 -0.5334 2.5100 38 1 11.7978 -1.0599 7.2584 39 1 3.5096 -0.2600 2.7600 40 1 3.2207 1.0758 1.6287 41 1 2.2022 -1.7342 1.0493 42 1 1.2641 -0.5870 2.0369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375918718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:48 Heat of formation + Delta-G solvation = -64.486182 kcal Electronic energy + Delta-G solvation = -19430.073022 eV Core-core repulsion = 16535.558352 eV Total energy + Delta-G solvation = -2894.514669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25588 -37.23712 -34.06851 -32.44650 -32.38466 -32.32456 -28.86216 -26.53276 -25.64665 -24.62514 -23.46085 -21.11413 -20.38184 -19.96717 -17.42278 -16.70066 -16.32689 -15.71333 -15.37897 -14.94937 -14.68642 -14.45014 -14.30236 -13.69771 -13.30037 -13.18496 -12.81271 -12.79008 -12.60192 -12.21801 -12.14137 -11.77333 -11.64170 -11.37920 -11.25506 -11.00531 -10.97914 -10.86857 -10.80777 -10.53532 -10.19537 -10.01917 -9.86944 -9.70505 -8.96099 -8.49872 -7.98101 -6.88250 -6.24188 -3.95556 3.06199 3.33782 3.49551 3.61620 3.95072 4.07025 4.36036 4.43815 4.52029 4.65045 4.87191 4.93040 4.99947 5.10909 5.14639 5.22822 5.26117 5.32901 5.47688 5.52208 5.59600 5.65399 5.68897 5.71808 5.79304 5.85933 5.87219 5.91430 5.98093 6.02603 6.14117 6.27297 6.33828 6.38062 6.60104 6.76046 7.26399 7.43421 7.58751 7.99811 8.48781 9.22027 10.85437 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042408 B = 0.003187 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.092216 B = 8784.268652 C = 9005.374730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.131 3.869 3 O -0.553 6.553 4 C -0.140 4.140 5 C -0.115 4.115 6 C 0.054 3.946 7 N -0.552 5.552 8 C 0.067 3.933 9 C -0.095 4.095 10 C -0.081 4.081 11 S -0.217 6.217 12 C -0.501 4.501 13 H 0.087 0.913 14 C 0.090 3.910 15 N -0.884 5.884 16 Si 0.862 3.138 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.238 1.238 20 C 0.076 3.924 21 C -0.106 4.106 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.366 0.634 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.270 0.730 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.727 1.341 -16.455 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 O -0.360 6.360 4 C -0.178 4.178 5 C -0.153 4.153 6 C -0.072 4.072 7 N -0.277 5.277 8 C -0.062 4.062 9 C -0.134 4.134 10 C -0.230 4.230 11 S 0.011 5.989 12 C -0.648 4.648 13 H 0.105 0.895 14 C -0.117 4.117 15 N -0.521 5.521 16 Si 0.687 3.313 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.161 1.161 20 C -0.053 4.053 21 C -0.144 4.144 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.214 0.786 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.913 -0.137 -15.224 26.683 hybrid contribution 0.355 1.365 -0.631 1.545 sum -21.558 1.228 -15.855 26.789 Atomic orbital electron populations 1.22616 0.96238 1.02575 1.02255 1.21048 0.92029 0.82449 0.95396 1.86712 1.77932 1.23462 1.47849 1.22608 0.97534 1.00767 0.96895 1.21384 0.93519 1.00263 1.00183 1.21985 0.99477 0.98432 0.87338 1.58833 1.02566 1.64009 1.02251 1.22128 0.90522 0.96654 0.96899 1.21337 0.95447 1.00564 0.96095 1.23025 0.98474 1.01832 0.99697 1.84145 1.26505 1.53023 1.35239 1.22144 1.00238 1.24507 1.17927 0.89473 1.24805 0.94145 0.96460 0.96331 1.69943 1.11831 1.41869 1.28429 0.86660 0.82141 0.82498 0.79978 1.19387 1.20181 1.16149 1.20731 0.89236 0.98300 0.97034 1.21585 0.97421 1.00176 0.95214 0.91784 0.92696 0.91687 0.78622 0.91505 0.92161 0.90568 0.92235 0.91803 0.91686 0.94764 0.91134 0.90810 0.91838 0.91666 0.91522 0.92034 0.91270 0.94056 0.90049 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.39 37.16 0.31 -0.87 16 2 C 0.13 1.06 0.91 -91.14 -0.08 0.97 16 3 O -0.55 -4.84 8.38 -35.23 -0.30 -5.13 16 4 C -0.14 -1.03 5.01 -25.69 -0.13 -1.16 16 5 C -0.12 -1.04 5.41 -27.40 -0.15 -1.18 16 6 C 0.05 0.58 5.37 -4.52 -0.02 0.55 16 7 N -0.55 -6.87 3.88 -240.00 -0.93 -7.80 16 8 C 0.07 0.93 5.03 -3.83 -0.02 0.91 16 9 C -0.10 -1.56 5.21 -26.73 -0.14 -1.70 16 10 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 11 S -0.22 -5.45 19.41 -107.50 -2.09 -7.54 16 12 C -0.50 -14.85 10.04 30.94 0.31 -14.54 16 13 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 14 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 15 N -0.88 -27.27 13.97 55.49 0.78 -26.49 16 16 Si 0.86 21.97 27.74 -169.99 -4.71 17.25 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 20 C 0.08 0.93 4.71 -6.74 -0.03 0.89 16 21 C -0.11 -1.04 5.11 -27.11 -0.14 -1.18 16 22 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 23 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.37 1.97 8.90 45.56 0.41 2.37 16 26 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 27 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 28 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.68 5.39 -51.93 -0.28 0.40 16 31 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 32 H 0.03 0.48 7.98 -51.93 -0.41 0.07 16 33 H 0.07 0.95 7.41 -51.93 -0.39 0.57 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 36 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 38 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.07 0.90 6.52 -51.93 -0.34 0.57 16 40 H 0.04 0.55 6.36 -51.93 -0.33 0.22 16 41 H 0.08 0.82 7.11 -51.93 -0.37 0.45 16 42 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -31.76 328.85 -8.86 -40.62 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.59 Total: 0.27 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 0.02 Total: -16.14 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.16 Total: -34.29 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.30 Total: -5.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -2.09 Total: -7.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.76 -8.86 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375918718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.862 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds