Wall clock time and date at job start Mon Mar 30 2020 20:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 108.74079 * 2 1 4 4 C 1.54170 * 108.85616 * 241.54220 * 2 1 3 5 5 C 1.53824 * 111.96789 * 197.68356 * 4 2 1 6 6 C 1.50816 * 111.62323 * 319.03955 * 5 4 2 7 7 N 1.47632 * 108.05103 * 95.05773 * 6 5 4 8 8 C 1.46897 * 110.99635 * 150.35053 * 7 6 5 9 9 C 1.53001 * 109.46958 * 204.68205 * 8 7 6 10 10 C 1.53006 * 109.47376 * 174.84141 * 9 8 7 11 11 S 1.81000 * 109.47169 * 180.02562 * 10 9 8 12 12 C 1.76199 * 99.99686 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00450 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00057 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99802 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47266 * 90.00348 * 16 14 12 18 18 H 1.48504 * 109.47263 * 210.00072 * 16 14 12 19 19 H 1.48507 * 109.47387 * 330.00057 * 16 14 12 20 20 C 1.39780 * 114.75918 * 277.19767 * 7 6 5 21 21 C 1.50747 * 108.85391 * 118.45342 * 2 1 3 22 22 H 1.09000 * 109.47120 * 301.54940 * 1 2 3 23 23 H 1.09003 * 109.47030 * 61.55178 * 1 2 3 24 24 H 1.09000 * 109.47083 * 181.54735 * 1 2 3 25 25 H 0.96705 * 113.99766 * 298.45283 * 3 2 1 26 26 H 1.09003 * 108.97565 * 318.31861 * 4 2 1 27 27 H 1.08992 * 108.98329 * 77.03751 * 4 2 1 28 28 H 1.09003 * 109.04797 * 79.59521 * 5 4 2 29 29 H 1.08999 * 109.04621 * 198.56042 * 5 4 2 30 30 H 1.09000 * 109.74193 * 335.41906 * 6 5 4 31 31 H 1.09000 * 109.74682 * 214.70070 * 6 5 4 32 32 H 1.08994 * 109.47672 * 84.68235 * 8 7 6 33 33 H 1.08999 * 109.47600 * 324.67730 * 8 7 6 34 34 H 1.08997 * 109.47197 * 54.83763 * 9 8 7 35 35 H 1.09001 * 109.47434 * 294.83752 * 9 8 7 36 36 H 1.08997 * 109.47266 * 59.99664 * 10 9 8 37 37 H 1.09011 * 109.46541 * 299.99982 * 10 9 8 38 38 H 0.96995 * 119.99768 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.01902 * 182.86662 * 20 7 6 40 40 H 1.09004 * 109.01827 * 301.68824 * 20 7 6 41 41 H 1.09003 * 109.54782 * 93.96126 * 21 2 1 42 42 H 1.09002 * 109.62069 * 333.73283 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9891 1.3532 0.0000 4 6 2.0283 -0.6952 -1.2827 5 6 3.5005 -1.1264 -1.1688 6 6 4.3363 -0.0742 -0.4841 7 7 4.4210 -0.4183 0.9491 8 6 5.6824 0.0588 1.5313 9 6 6.0319 -0.7894 2.7558 10 6 7.4069 -0.3778 3.2859 11 16 7.8206 -1.3818 4.7339 12 6 9.4047 -0.7166 5.1249 13 1 9.8215 0.0761 4.5213 14 6 10.1169 -1.2113 6.2088 15 7 11.3000 -0.7140 6.5012 16 14 9.3956 -2.5817 7.2533 17 1 9.8085 -3.8961 6.6991 18 1 9.8911 -2.4547 8.6474 19 1 7.9138 -2.4840 7.2437 20 6 3.3276 -0.0054 1.7159 21 6 2.0172 -0.6797 1.2543 22 1 -0.3633 0.5377 0.8758 23 1 -0.3633 0.4896 -0.9036 24 1 -0.3633 -1.0273 0.0278 25 1 1.7169 1.8609 -0.7767 26 1 1.4143 -1.5762 -1.4697 27 1 1.9241 -0.0077 -2.1219 28 1 3.5566 -2.0529 -0.5973 29 1 3.8985 -1.3005 -2.1684 30 1 3.8670 0.9026 -0.6012 31 1 5.3359 -0.0576 -0.9185 32 1 5.5732 1.1011 1.8306 33 1 6.4788 -0.0254 0.7919 34 1 6.0511 -1.8424 2.4749 35 1 5.2821 -0.6340 3.5316 36 1 7.3878 0.6751 3.5668 37 1 8.1568 -0.5334 2.5100 38 1 11.7978 -1.0599 7.2584 39 1 3.5096 -0.2600 2.7600 40 1 3.2207 1.0758 1.6287 41 1 2.2022 -1.7342 1.0493 42 1 1.2641 -0.5870 2.0369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375918718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:48 Heat of formation + Delta-G solvation = -85.700771 kcal Electronic energy + Delta-G solvation = -19430.992955 eV Core-core repulsion = 16535.558352 eV Total energy + Delta-G solvation = -2895.434603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02803 -38.11957 -35.03755 -34.68721 -33.44934 -33.09394 -29.69859 -28.01937 -27.32340 -25.69996 -24.30505 -22.32410 -21.34545 -20.63628 -19.61174 -17.40572 -17.27228 -17.08390 -16.69846 -16.22198 -15.94841 -15.78623 -15.25825 -14.94916 -14.68973 -14.27712 -14.00246 -13.64496 -13.62190 -13.41315 -13.14580 -13.06699 -12.96601 -12.67320 -12.59373 -12.40439 -12.12689 -12.04473 -11.80347 -11.56112 -11.48444 -11.30198 -11.21583 -11.15558 -10.56796 -10.49668 -9.00354 -8.96453 -8.52289 -6.23517 1.12449 1.32100 1.48124 1.74514 2.25098 2.68687 2.85645 3.04900 3.39036 3.83600 3.87074 3.94945 4.01129 4.16159 4.24502 4.30524 4.34300 4.44592 4.50036 4.61942 4.70886 4.75019 4.76407 4.80332 4.84117 4.93065 5.00130 5.08084 5.16276 5.18676 5.21797 5.23893 5.30880 5.36169 5.53813 5.56667 5.69551 6.09557 6.27907 6.61664 6.91784 6.96771 8.61012 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042408 B = 0.003187 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.092216 B = 8784.268652 C = 9005.374730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.131 3.869 3 O -0.571 6.571 4 C -0.135 4.135 5 C -0.113 4.113 6 C 0.054 3.946 7 N -0.555 5.555 8 C 0.075 3.925 9 C -0.081 4.081 10 C -0.069 4.069 11 S -0.221 6.221 12 C -0.522 4.522 13 H 0.049 0.951 14 C 0.037 3.963 15 N -0.923 5.923 16 Si 0.927 3.073 17 H -0.260 1.260 18 H -0.262 1.262 19 H -0.230 1.230 20 C 0.078 3.922 21 C -0.105 4.105 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.381 0.619 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.277 0.723 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.910 0.479 -17.512 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.091 3.909 3 O -0.379 6.379 4 C -0.173 4.173 5 C -0.151 4.151 6 C -0.073 4.073 7 N -0.279 5.279 8 C -0.055 4.055 9 C -0.120 4.120 10 C -0.218 4.218 11 S 0.007 5.993 12 C -0.670 4.670 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.561 5.561 16 Si 0.748 3.252 17 H -0.185 1.185 18 H -0.186 1.186 19 H -0.153 1.153 20 C -0.052 4.052 21 C -0.143 4.143 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.231 0.769 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.106 -0.986 -16.302 29.117 hybrid contribution 1.049 1.732 -0.399 2.064 sum -23.056 0.746 -16.701 28.479 Atomic orbital electron populations 1.22548 0.94931 1.03035 1.02638 1.21016 0.92945 0.82173 0.94744 1.86667 1.78318 1.23901 1.49048 1.22574 0.96304 1.01467 0.96967 1.21347 0.94554 0.98928 1.00285 1.22066 0.99945 0.99231 0.86016 1.58847 1.01861 1.63975 1.03262 1.21968 0.91758 0.95825 0.95927 1.21201 0.92891 1.00809 0.97083 1.23082 1.00607 1.00716 0.97351 1.83846 1.23372 1.53998 1.38057 1.22348 1.02759 1.24022 1.17855 0.93224 1.25800 0.94458 0.98970 0.97543 1.70040 1.13261 1.43468 1.29374 0.85694 0.81716 0.79177 0.78629 1.18505 1.18634 1.15321 1.20701 0.90270 0.97839 0.96357 1.21582 0.96213 1.00030 0.96466 0.92571 0.91240 0.91113 0.76908 0.90543 0.90539 0.91973 0.91019 0.91568 0.91750 0.95064 0.90554 0.90990 0.91933 0.91945 0.91547 0.91371 0.92785 0.95231 0.90253 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.39 71.98 0.60 -1.26 16 2 C 0.13 1.83 0.91 -11.13 -0.01 1.82 16 3 O -0.57 -8.89 8.38 -148.98 -1.25 -10.14 16 4 C -0.14 -1.60 5.01 31.27 0.16 -1.45 16 5 C -0.11 -1.78 5.41 30.16 0.16 -1.62 16 6 C 0.05 1.05 5.37 85.45 0.46 1.51 16 7 N -0.56 -13.20 3.88 -913.23 -3.54 -16.75 16 8 C 0.07 2.00 5.03 86.30 0.43 2.44 16 9 C -0.08 -2.58 5.21 30.60 0.16 -2.42 16 10 C -0.07 -2.75 5.67 71.98 0.41 -2.34 16 11 S -0.22 -11.02 19.41 -56.49 -1.10 -12.12 16 12 C -0.52 -31.66 10.04 67.96 0.68 -30.98 16 13 H 0.05 3.27 8.03 -2.91 -0.02 3.24 16 14 C 0.04 2.21 5.50 84.86 0.47 2.68 16 15 N -0.92 -57.91 13.97 21.65 0.30 -57.60 16 16 Si 0.93 45.09 27.74 68.60 1.90 46.99 16 17 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.23 -10.81 6.74 99.48 0.67 -10.14 16 20 C 0.08 1.82 4.71 88.07 0.41 2.24 16 21 C -0.11 -1.93 5.11 30.35 0.16 -1.77 16 22 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 23 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.38 3.19 8.90 -74.05 -0.66 2.53 16 26 H 0.08 0.79 7.99 -2.39 -0.02 0.77 16 27 H 0.08 0.69 8.00 -2.39 -0.02 0.67 16 28 H 0.06 1.17 7.26 -2.39 -0.02 1.15 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.29 5.39 -2.39 -0.01 1.27 16 31 H 0.06 1.26 7.38 -2.39 -0.02 1.24 16 32 H 0.03 0.86 7.98 -2.39 -0.02 0.84 16 33 H 0.08 1.97 7.41 -2.39 -0.02 1.95 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.03 6.90 -2.39 -0.02 2.01 16 36 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.05 1.40 6.52 -2.39 -0.02 1.38 16 40 H 0.03 0.77 6.36 -2.38 -0.02 0.76 16 41 H 0.08 1.48 7.11 -2.39 -0.02 1.47 16 42 H 0.07 1.28 7.69 -2.39 -0.02 1.26 16 Total: -1.00 -68.42 328.85 0.70 -67.72 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.29 Total: 13.06 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.09 Total: -31.16 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -3.24 Total: -74.35 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.25 Total: -10.14 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.10 Total: -12.12 kcal Total: -68.42 0.70 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375918718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.984 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds