Wall clock time and date at job start Mon Mar 30 2020 20:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 C 1.52994 * 109.52438 * 177.55857 * 14 13 12 16 16 C 1.50699 * 109.47143 * 65.31880 * 15 14 13 17 17 C 1.38233 * 120.00036 * 269.72638 * 16 15 14 18 18 C 1.38233 * 120.00345 * 179.76567 * 17 16 15 19 19 C 1.38240 * 119.99731 * 0.50911 * 18 17 16 20 20 C 1.38232 * 119.99876 * 359.74421 * 19 18 17 21 21 C 1.38234 * 120.00281 * 0.02562 * 20 19 18 22 22 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 23 23 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 30 30 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 31 31 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 32 32 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 33 33 H 1.09008 * 109.57727 * 297.72064 * 14 13 12 34 34 H 1.09006 * 109.47383 * 185.31653 * 15 14 13 35 35 H 1.09002 * 109.47567 * 305.31791 * 15 14 13 36 36 H 1.08006 * 120.00026 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.00481 * 180.22709 * 18 17 16 38 38 H 1.07996 * 120.00040 * 179.72842 * 19 18 17 39 39 H 1.07998 * 119.99860 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00186 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.50431 * 182.40729 * 22 14 13 42 42 H 1.08995 * 109.53846 * 62.30837 * 22 14 13 43 43 H 1.08992 * 109.46356 * 294.17825 * 23 11 10 44 44 H 1.09007 * 109.46137 * 54.15905 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4204 -4.9118 -0.9842 13 6 -0.4100 -6.1910 -0.8561 14 6 0.4919 -7.4051 -1.0943 15 6 -0.3190 -8.6889 -0.9077 16 6 -1.3789 -8.7733 -1.9757 17 6 -2.6306 -8.2311 -1.7517 18 6 -3.6013 -8.3041 -2.7332 19 6 -3.3236 -8.9287 -3.9347 20 6 -2.0736 -9.4756 -4.1568 21 6 -1.1014 -9.3983 -3.1771 22 6 1.6464 -7.3785 -0.0889 23 6 2.4172 -6.0650 -0.2392 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 -0.2160 -4.0460 -0.8010 30 1 0.8383 -4.8491 -1.9889 31 1 -1.2100 -6.1811 -1.5964 32 1 -0.8396 -6.2474 0.1441 33 1 0.8910 -7.3704 -2.1081 34 1 0.3432 -9.5514 -0.9842 35 1 -0.7925 -8.6803 0.0741 36 1 -2.8491 -7.7473 -0.8111 37 1 -4.5780 -7.8773 -2.5596 38 1 -4.0833 -8.9897 -4.6999 39 1 -1.8568 -9.9639 -5.0953 40 1 -0.1249 -9.8260 -3.3505 41 1 2.3157 -8.2172 -0.2810 42 1 1.2499 -7.4540 0.9236 43 1 2.8258 -5.9969 -1.2474 44 1 3.2312 -6.0367 0.4853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037388564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:33 Heat of formation + Delta-G solvation = 1.866910 kcal Electronic energy + Delta-G solvation = -20681.566268 eV Core-core repulsion = 17790.318028 eV Total energy + Delta-G solvation = -2891.248240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73097 -38.46699 -35.18795 -33.06538 -31.60038 -31.02831 -30.41091 -29.19708 -26.79699 -24.26520 -23.18053 -22.61704 -22.32388 -20.83526 -19.95001 -19.23232 -16.83682 -16.50279 -15.38630 -15.28687 -15.09876 -14.58719 -14.37805 -14.12594 -13.87376 -13.65644 -13.48089 -13.23350 -12.76921 -12.54858 -12.38183 -12.01066 -11.81538 -11.61468 -11.30499 -11.06307 -10.96459 -10.91932 -10.86129 -10.56059 -10.49639 -10.15727 -10.00850 -9.80255 -9.26130 -9.04462 -8.98115 -8.70478 -8.32447 -7.61411 -5.98922 -4.01051 1.28637 1.32243 3.32725 3.38887 3.42401 3.70315 4.42422 4.60045 4.65226 4.73717 4.90922 5.00123 5.02227 5.03340 5.19176 5.36978 5.38887 5.43748 5.55113 5.60901 5.66695 5.76044 5.81773 5.88831 5.93847 5.96132 6.07153 6.15481 6.18397 6.21849 6.37391 6.39537 6.40506 6.43590 6.50545 6.57706 6.67791 6.70296 6.93815 6.97270 7.57190 7.67917 7.85643 7.88780 8.07805 8.45178 9.05636 9.62509 11.12475 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.003465 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.968578 B = 8078.914552 C = 8862.393449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.539 5.539 12 C 0.051 3.949 13 C -0.110 4.110 14 C -0.081 4.081 15 C -0.076 4.076 16 C -0.073 4.073 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.108 4.108 23 C 0.055 3.945 24 H 0.260 0.740 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -20.553 -5.087 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.065 4.065 11 N -0.264 5.264 12 C -0.077 4.077 13 C -0.148 4.148 14 C -0.100 4.100 15 C -0.114 4.114 16 C -0.073 4.073 17 C -0.132 4.132 18 C -0.137 4.137 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.074 4.074 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.959 -20.493 -4.614 21.376 hybrid contribution 0.825 1.128 -0.936 1.682 sum -3.134 -19.365 -5.550 20.387 Atomic orbital electron populations 1.69961 1.06011 1.26580 1.50747 1.24991 0.94842 0.99180 0.95313 0.86594 0.79864 0.83486 0.78047 1.20730 1.21193 1.19879 1.21197 0.93005 0.91055 1.50749 0.92791 1.19241 0.94122 0.90514 0.97742 1.22303 0.96998 0.88320 0.98833 1.62048 1.11590 1.03440 1.49275 1.22177 0.94115 0.98470 0.92899 1.21715 0.97544 0.93606 1.01939 1.21177 0.95513 0.93957 0.99318 1.20703 0.95528 0.98215 0.96933 1.19943 0.94881 0.97033 0.95462 1.21132 0.92987 0.99443 0.99622 1.21170 0.99387 0.99247 0.93868 1.21115 0.97026 0.99177 0.97451 1.21109 0.93724 1.00087 0.98982 1.21040 0.99193 1.00125 0.93517 1.21623 0.96608 0.96569 0.99822 1.22032 0.95114 0.91270 0.98947 0.93005 0.96169 0.95714 0.96420 0.92038 0.88925 0.95885 0.91816 0.91367 0.91686 0.91257 0.90831 0.85885 0.86169 0.86423 0.86400 0.86357 0.92245 0.91154 0.95764 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 10 C 0.06 1.36 5.21 -3.82 -0.02 1.34 16 11 N -0.54 -10.09 4.81 -234.67 -1.13 -11.22 16 12 C 0.05 0.93 4.85 -3.84 -0.02 0.91 16 13 C -0.11 -1.59 4.89 -26.65 -0.13 -1.72 16 14 C -0.08 -0.99 2.24 -90.50 -0.20 -1.20 16 15 C -0.08 -0.79 4.84 -27.89 -0.14 -0.92 16 16 C -0.07 -0.80 4.72 -104.62 -0.49 -1.29 16 17 C -0.11 -1.25 8.06 -39.59 -0.32 -1.56 16 18 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 19 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 22 C -0.11 -1.34 5.38 -26.65 -0.14 -1.49 16 23 C 0.05 0.84 5.42 -3.83 -0.02 0.82 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.92 5.81 -51.93 -0.30 1.62 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.89 6.46 -51.93 -0.34 0.56 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.07 0.73 8.08 -51.93 -0.42 0.32 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -30.44 345.53 -11.47 -41.92 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.68 Total: -1.59 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.59 Total: -24.87 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.39 Total: -37.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.44 -11.47 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037388564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.782 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds