Wall clock time and date at job start Mon Mar 30 2020 20:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47180 * 269.99593 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99396 * 3 2 1 6 6 H 1.48500 * 109.47314 * 149.99700 * 3 2 1 7 7 C 1.37884 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46965 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99878 * 185.16992 * 11 10 9 13 13 H 1.09005 * 109.47116 * 326.37280 * 12 11 10 14 14 C 1.50694 * 109.47613 * 86.37679 * 12 11 10 15 15 C 1.38241 * 119.99904 * 39.86602 * 14 12 11 16 16 C 1.38237 * 120.00151 * 180.02562 * 15 14 12 17 17 C 1.38234 * 119.99804 * 0.07687 * 16 15 14 18 18 C 1.38240 * 120.00067 * 359.97438 * 17 16 15 19 19 C 1.38229 * 120.00280 * 219.99818 * 14 12 11 20 20 C 1.53007 * 109.47020 * 206.38095 * 12 11 10 21 21 C 1.54262 * 110.03333 * 180.29199 * 20 12 11 22 22 C 1.54961 * 104.15962 * 217.13475 * 21 20 12 23 23 C 1.54890 * 102.77795 * 37.88721 * 22 21 20 24 24 C 1.53872 * 110.03218 * 63.07051 * 20 12 11 25 25 H 0.97002 * 119.99446 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46695 * 59.99877 * 9 7 2 27 27 H 1.08995 * 109.46851 * 299.99355 * 9 7 2 28 28 H 1.09005 * 109.46666 * 60.00306 * 10 9 7 29 29 H 1.09000 * 109.47234 * 300.00403 * 10 9 7 30 30 H 1.00897 * 110.99818 * 61.20839 * 11 10 9 31 31 H 1.08001 * 119.99934 * 0.11313 * 15 14 12 32 32 H 1.07997 * 119.99731 * 180.34315 * 16 15 14 33 33 H 1.07995 * 119.99779 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.99521 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.99912 * 359.97438 * 19 14 12 36 36 H 1.09001 * 110.01113 * 301.68386 * 20 12 11 37 37 H 1.09003 * 110.48740 * 335.78139 * 21 20 12 38 38 H 1.09005 * 110.48879 * 98.42283 * 21 20 12 39 39 H 1.09008 * 110.71967 * 279.57261 * 22 21 20 40 40 H 1.08999 * 110.92501 * 156.29775 * 22 21 20 41 41 H 1.08997 * 110.48725 * 203.40286 * 23 22 21 42 42 H 1.08997 * 110.59709 * 80.81791 * 23 22 21 43 43 H 1.09002 * 110.03442 * 238.57108 * 24 20 12 44 44 H 1.09003 * 110.03630 * 0.02562 * 24 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9344 -0.0001 12 6 2.4301 -6.0732 0.1235 13 1 3.3661 -5.8413 -0.3848 14 6 2.7031 -6.3427 1.5808 15 6 1.6791 -6.2491 2.5047 16 6 1.9296 -6.4958 3.8416 17 6 3.2045 -6.8345 4.2548 18 6 4.2288 -6.9271 3.3310 19 6 3.9781 -6.6808 1.9941 20 6 1.7969 -7.3115 -0.5143 21 6 2.7494 -8.5180 -0.3852 22 6 2.5662 -9.2897 -1.7165 23 6 2.4137 -8.1504 -2.7547 24 6 1.5831 -7.0779 -2.0201 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8717 -3.6044 0.8906 29 1 2.8718 -3.6045 -0.8894 30 1 0.9372 -5.0204 -0.8258 31 1 0.6830 -5.9846 2.1818 32 1 1.1284 -6.4281 4.5625 33 1 3.4004 -7.0268 5.2993 34 1 5.2249 -7.1913 3.6540 35 1 4.7785 -6.7523 1.2725 36 1 0.8449 -7.5340 -0.0321 37 1 3.7804 -8.1805 -0.2789 38 1 2.4621 -9.1421 0.4610 39 1 1.6677 -9.9061 -1.6845 40 1 3.4429 -9.8987 -1.9372 41 1 1.8820 -8.5068 -3.6368 42 1 3.3894 -7.7525 -3.0334 43 1 0.5276 -7.1880 -2.2689 44 1 1.9308 -6.0826 -2.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109800982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:01 Heat of formation + Delta-G solvation = -3.596806 kcal Electronic energy + Delta-G solvation = -21052.941234 eV Core-core repulsion = 18161.456070 eV Total energy + Delta-G solvation = -2891.485165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75030 -37.95025 -35.54671 -33.15352 -31.50118 -30.61954 -29.51175 -28.57116 -27.94655 -24.66241 -23.42503 -22.31101 -21.03025 -20.63428 -20.27495 -19.22455 -16.79357 -16.32432 -15.94553 -15.51930 -15.04424 -14.78508 -14.41164 -14.09755 -13.62795 -13.37245 -13.20293 -13.00297 -12.98041 -12.44700 -12.16500 -11.96082 -11.47075 -11.18599 -11.11834 -11.06939 -11.03026 -10.90695 -10.75048 -10.68184 -10.57593 -10.44286 -10.29260 -9.94207 -9.34804 -9.11816 -8.63762 -8.39831 -8.32232 -7.82048 -5.97262 -3.99349 1.61813 1.69973 3.33381 3.39582 3.43329 4.04509 4.41419 4.52988 4.56374 4.64250 4.89791 5.11472 5.17967 5.23174 5.35011 5.38846 5.39132 5.41842 5.52073 5.57594 5.63597 5.69134 5.77064 5.80759 5.87462 5.90183 6.00899 6.05871 6.18434 6.23671 6.28606 6.35414 6.36582 6.40367 6.50698 6.70323 6.79635 6.95103 7.04229 7.28520 7.53452 7.76388 7.85055 8.00485 8.12376 8.47102 9.07908 9.64184 11.14190 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.004825 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.232900 B = 5801.440493 C = 7075.310680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.069 3.931 11 N -0.685 5.685 12 C 0.130 3.870 13 H 0.047 0.953 14 C -0.061 4.061 15 C -0.082 4.082 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.087 4.087 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.126 4.126 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.025 0.975 28 H 0.057 0.943 29 H 0.014 0.986 30 H 0.339 0.661 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -19.338 0.764 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.059 4.059 11 N -0.316 5.316 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.106 4.106 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.164 4.164 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.039 -19.170 1.429 19.873 hybrid contribution 0.898 1.114 -0.797 1.638 sum 5.937 -18.056 0.632 19.017 Atomic orbital electron populations 1.69974 1.06007 1.26506 1.50783 1.24985 0.94820 0.99134 0.95346 0.86611 0.79887 0.83565 0.78039 1.20719 1.21192 1.19906 1.21183 0.92943 0.91084 1.50704 0.92885 1.19031 0.93970 0.90305 0.97613 1.22173 0.96825 0.88454 0.98493 1.60550 1.23684 1.01537 1.45848 1.20504 0.95143 0.90945 0.91429 0.93512 1.19842 0.93022 0.97833 0.95474 1.21074 1.00076 0.96756 0.92127 1.21175 0.96783 1.00337 0.96216 1.21050 0.93446 1.01213 0.99034 1.20985 0.98709 1.01567 0.93332 1.20978 0.96270 1.00812 0.95767 1.21922 0.99420 0.94133 0.95117 1.22387 0.99612 0.96051 0.97153 1.22509 1.01226 0.97307 0.95209 1.22340 1.00060 0.95865 0.97820 1.22270 1.00378 0.99278 0.94460 0.93046 0.96901 0.95708 0.92461 0.96802 0.84227 0.85192 0.86536 0.86821 0.86760 0.86870 0.90215 0.91544 0.91764 0.91704 0.91926 0.91938 0.91844 0.91466 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.75 5.28 -27.88 -0.15 0.60 16 10 C 0.07 1.47 5.39 -3.82 -0.02 1.45 16 11 N -0.68 -11.99 5.49 -107.95 -0.59 -12.59 16 12 C 0.13 1.90 1.46 -68.87 -0.10 1.80 16 13 H 0.05 0.72 7.70 -51.93 -0.40 0.32 16 14 C -0.06 -0.90 4.14 -104.63 -0.43 -1.34 16 15 C -0.08 -1.25 9.32 -39.58 -0.37 -1.62 16 16 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 17 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 18 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 19 C -0.12 -1.63 8.86 -39.59 -0.35 -1.98 16 20 C -0.09 -1.05 2.61 -89.50 -0.23 -1.28 16 21 C -0.11 -1.20 5.52 -25.04 -0.14 -1.34 16 22 C -0.12 -1.15 6.91 -24.70 -0.17 -1.33 16 23 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 24 C -0.13 -1.43 5.61 -25.61 -0.14 -1.58 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.28 7.97 -51.93 -0.41 0.87 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.34 5.68 7.00 -39.29 -0.27 5.41 16 31 H 0.13 2.06 7.72 -52.49 -0.40 1.66 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.11 1.37 7.87 -52.49 -0.41 0.96 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.72 7.10 -51.93 -0.37 0.35 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.83 7.05 -51.93 -0.37 0.47 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -30.27 350.33 -11.16 -41.43 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.68 Total: 3.28 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.88 Total: -27.90 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.14 Total: -39.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.27 -11.16 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109800982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.836 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds