Wall clock time and date at job start Mon Mar 30 2020 20:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47180 * 269.99593 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99396 * 3 2 1 6 6 H 1.48500 * 109.47314 * 149.99700 * 3 2 1 7 7 C 1.37884 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46965 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99878 * 185.16992 * 11 10 9 13 13 H 1.09005 * 109.47116 * 326.37280 * 12 11 10 14 14 C 1.50694 * 109.47613 * 86.37679 * 12 11 10 15 15 C 1.38241 * 119.99904 * 39.86602 * 14 12 11 16 16 C 1.38237 * 120.00151 * 180.02562 * 15 14 12 17 17 C 1.38234 * 119.99804 * 0.07687 * 16 15 14 18 18 C 1.38240 * 120.00067 * 359.97438 * 17 16 15 19 19 C 1.38229 * 120.00280 * 219.99818 * 14 12 11 20 20 C 1.53007 * 109.47020 * 206.38095 * 12 11 10 21 21 C 1.54262 * 110.03333 * 180.29199 * 20 12 11 22 22 C 1.54961 * 104.15962 * 217.13475 * 21 20 12 23 23 C 1.54890 * 102.77795 * 37.88721 * 22 21 20 24 24 C 1.53872 * 110.03218 * 63.07051 * 20 12 11 25 25 H 0.97002 * 119.99446 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46695 * 59.99877 * 9 7 2 27 27 H 1.08995 * 109.46851 * 299.99355 * 9 7 2 28 28 H 1.09005 * 109.46666 * 60.00306 * 10 9 7 29 29 H 1.09000 * 109.47234 * 300.00403 * 10 9 7 30 30 H 1.00897 * 110.99818 * 61.20839 * 11 10 9 31 31 H 1.08001 * 119.99934 * 0.11313 * 15 14 12 32 32 H 1.07997 * 119.99731 * 180.34315 * 16 15 14 33 33 H 1.07995 * 119.99779 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.99521 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.99912 * 359.97438 * 19 14 12 36 36 H 1.09001 * 110.01113 * 301.68386 * 20 12 11 37 37 H 1.09003 * 110.48740 * 335.78139 * 21 20 12 38 38 H 1.09005 * 110.48879 * 98.42283 * 21 20 12 39 39 H 1.09008 * 110.71967 * 279.57261 * 22 21 20 40 40 H 1.08999 * 110.92501 * 156.29775 * 22 21 20 41 41 H 1.08997 * 110.48725 * 203.40286 * 23 22 21 42 42 H 1.08997 * 110.59709 * 80.81791 * 23 22 21 43 43 H 1.09002 * 110.03442 * 238.57108 * 24 20 12 44 44 H 1.09003 * 110.03630 * 0.02562 * 24 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9344 -0.0001 12 6 2.4301 -6.0732 0.1235 13 1 3.3661 -5.8413 -0.3848 14 6 2.7031 -6.3427 1.5808 15 6 1.6791 -6.2491 2.5047 16 6 1.9296 -6.4958 3.8416 17 6 3.2045 -6.8345 4.2548 18 6 4.2288 -6.9271 3.3310 19 6 3.9781 -6.6808 1.9941 20 6 1.7969 -7.3115 -0.5143 21 6 2.7494 -8.5180 -0.3852 22 6 2.5662 -9.2897 -1.7165 23 6 2.4137 -8.1504 -2.7547 24 6 1.5831 -7.0779 -2.0201 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8717 -3.6044 0.8906 29 1 2.8718 -3.6045 -0.8894 30 1 0.9372 -5.0204 -0.8258 31 1 0.6830 -5.9846 2.1818 32 1 1.1284 -6.4281 4.5625 33 1 3.4004 -7.0268 5.2993 34 1 5.2249 -7.1913 3.6540 35 1 4.7785 -6.7523 1.2725 36 1 0.8449 -7.5340 -0.0321 37 1 3.7804 -8.1805 -0.2789 38 1 2.4621 -9.1421 0.4610 39 1 1.6677 -9.9061 -1.6845 40 1 3.4429 -9.8987 -1.9372 41 1 1.8820 -8.5068 -3.6368 42 1 3.3894 -7.7525 -3.0334 43 1 0.5276 -7.1880 -2.2689 44 1 1.9308 -6.0826 -2.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109800982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:00 Heat of formation + Delta-G solvation = -18.805768 kcal Electronic energy + Delta-G solvation = -21053.600744 eV Core-core repulsion = 18161.456070 eV Total energy + Delta-G solvation = -2892.144675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83054 -38.92527 -37.00329 -35.10555 -33.02688 -31.69105 -30.86765 -29.50230 -29.31501 -26.33471 -24.86553 -23.42331 -22.54904 -21.79455 -21.35991 -20.27460 -18.51691 -17.83801 -17.14834 -16.61740 -16.41685 -16.17079 -15.78560 -15.39333 -14.97219 -14.66260 -14.29681 -14.24677 -14.10778 -13.99726 -13.57681 -13.23179 -13.14255 -12.83029 -12.57017 -12.39517 -12.07028 -12.04574 -11.93612 -11.88231 -11.75703 -11.53855 -11.46373 -11.36049 -11.29802 -11.18111 -10.57245 -9.70017 -9.47960 -9.30852 -8.21156 -6.32588 0.55880 0.63211 1.38629 1.40407 1.51557 2.39432 2.97191 3.12170 3.26157 3.63479 3.72922 3.93030 4.09332 4.12202 4.27017 4.34103 4.39206 4.41962 4.52237 4.56626 4.63630 4.66817 4.74711 4.77990 4.83556 4.86603 4.92416 5.03602 5.06009 5.10227 5.20729 5.25982 5.27233 5.35350 5.43003 5.45961 5.51878 5.65314 5.67458 5.72344 5.75060 5.86785 6.16430 6.22771 6.31134 6.56605 6.84256 7.36503 8.90983 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.004825 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.232900 B = 5801.440493 C = 7075.310680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.037 3.963 10 C 0.092 3.908 11 N -0.687 5.687 12 C 0.135 3.865 13 H 0.043 0.957 14 C -0.076 4.076 15 C -0.106 4.106 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.128 4.128 20 C -0.081 4.081 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.128 4.128 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.342 0.658 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -20.195 0.978 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.037 4.037 11 N -0.319 5.319 12 C 0.025 3.975 13 H 0.061 0.939 14 C -0.076 4.076 15 C -0.124 4.124 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.165 4.165 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.161 0.839 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.931 -20.051 1.638 21.278 hybrid contribution 0.274 1.344 -0.820 1.598 sum 7.206 -18.707 0.819 20.064 Atomic orbital electron populations 1.70107 1.07783 1.27778 1.51371 1.25946 0.95751 1.03257 0.94561 0.85447 0.78611 0.78397 0.78590 1.19545 1.20582 1.18925 1.21592 0.93372 0.92374 1.51024 0.92512 1.18859 0.94166 0.92093 0.94915 1.21708 0.95337 0.88659 0.97996 1.60429 1.24168 1.01133 1.46144 1.20535 0.94319 0.90596 0.92033 0.93940 1.19902 0.93733 0.98792 0.95210 1.21069 0.99589 0.98465 0.93319 1.21408 0.98062 1.00207 0.95786 1.21402 0.92791 1.00143 1.00547 1.21361 1.00037 1.00316 0.92799 1.21196 0.95921 1.00682 0.96822 1.21867 0.99286 0.93652 0.95222 1.22342 0.98959 0.95295 0.98125 1.22494 1.02256 0.97056 0.93818 1.22336 0.99799 0.95428 0.98245 1.22274 1.00965 0.99106 0.94184 0.92726 0.98993 0.98960 0.93470 0.96553 0.83876 0.86993 0.85245 0.84115 0.83958 0.85517 0.91039 0.91565 0.91717 0.91045 0.90427 0.90749 0.91867 0.91141 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.05 5.28 29.85 0.16 2.20 16 10 C 0.09 4.06 5.39 86.31 0.47 4.52 16 11 N -0.69 -25.04 5.49 -495.44 -2.72 -27.76 16 12 C 0.13 3.98 1.46 44.17 0.06 4.05 16 13 H 0.04 1.30 7.70 -2.38 -0.02 1.28 16 14 C -0.08 -2.24 4.14 -19.87 -0.08 -2.32 16 15 C -0.11 -3.30 9.32 22.27 0.21 -3.10 16 16 C -0.14 -3.68 10.05 22.27 0.22 -3.46 16 17 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 18 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 19 C -0.13 -3.30 8.86 22.27 0.20 -3.11 16 20 C -0.08 -1.95 2.61 -10.07 -0.03 -1.98 16 21 C -0.11 -2.16 5.52 31.69 0.17 -1.99 16 22 C -0.12 -1.94 6.91 31.91 0.22 -1.72 16 23 C -0.12 -2.17 6.83 31.67 0.22 -1.96 16 24 C -0.13 -2.86 5.61 31.32 0.18 -2.68 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.05 2.17 7.97 -2.38 -0.02 2.15 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.34 12.00 7.00 -89.70 -0.63 11.38 16 31 H 0.11 3.78 7.72 -2.91 -0.02 3.76 16 32 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.13 2.85 7.87 -2.91 -0.02 2.83 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.32 7.10 -2.39 -0.02 1.30 16 38 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.27 7.05 -2.39 -0.02 1.25 16 Total: -1.00 -65.81 350.33 3.05 -62.76 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.32 Total: 23.55 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 3.14 Total: -48.22 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.43 Total: -85.21 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.81 3.05 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109800982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.956 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds