Wall clock time and date at job start Mon Mar 30 2020 20:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38147 * 119.89298 * 2 1 4 4 C 1.38206 * 119.93878 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.93668 * 0.02562 * 4 3 2 6 6 C 1.38315 * 120.25611 * 359.90605 * 5 4 3 7 7 C 1.38429 * 119.83427 * 0.18151 * 6 5 4 8 8 C 1.51367 * 109.77963 * 179.86254 * 7 6 5 9 9 C 1.54342 * 105.17242 * 342.72977 * 8 7 6 10 10 C 1.51371 * 130.50807 * 179.85137 * 6 5 4 11 11 H 1.08998 * 110.30351 * 78.40541 * 10 6 5 12 12 N 1.46895 * 110.30323 * 316.34519 * 10 6 5 13 13 C 1.46906 * 110.99789 * 87.77470 * 12 10 6 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47454 * 300.00316 * 14 13 12 16 16 C 1.52997 * 109.46978 * 60.00394 * 14 13 12 17 17 C 1.50696 * 109.46999 * 179.97438 * 14 13 12 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00355 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99521 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00556 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47278 * 89.99815 * 21 19 17 23 23 H 1.48498 * 109.47109 * 210.00244 * 21 19 17 24 24 H 1.48502 * 109.46821 * 329.99631 * 21 19 17 25 25 H 1.09007 * 109.47129 * 270.01857 * 1 2 3 26 26 H 1.09002 * 109.47352 * 30.02221 * 1 2 3 27 27 H 1.09003 * 109.47211 * 150.02183 * 1 2 3 28 28 H 1.08003 * 120.03048 * 359.96096 * 3 2 1 29 29 H 1.08006 * 120.03420 * 179.97438 * 4 3 2 30 30 H 1.07993 * 119.89799 * 180.02562 * 5 4 3 31 31 H 1.08997 * 110.30349 * 223.79876 * 8 7 6 32 32 H 1.09006 * 110.30076 * 101.65385 * 8 7 6 33 33 H 1.09003 * 110.81848 * 268.12707 * 9 8 7 34 34 H 1.08996 * 110.81880 * 144.58279 * 9 8 7 35 35 H 1.00899 * 111.00672 * 323.82415 * 12 10 6 36 36 H 1.08992 * 109.47459 * 299.99826 * 13 12 10 37 37 H 1.09004 * 109.47040 * 59.99976 * 13 12 10 38 38 H 1.09002 * 109.47067 * 59.99861 * 15 14 13 39 39 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46930 * 299.99944 * 15 14 13 41 41 H 1.08998 * 109.47624 * 59.99457 * 16 14 13 42 42 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47045 * 299.99833 * 16 14 13 44 44 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5775 1.1988 0.0005 5 6 4.2679 0.0022 0.0005 6 6 3.5813 -1.1986 0.0020 7 6 2.1970 -1.2003 -0.0004 8 6 1.6866 -2.6253 -0.0016 9 6 2.8903 -3.4852 -0.4420 10 6 4.0923 -2.6234 -0.0007 11 1 4.4167 -2.9107 0.9994 12 7 5.1995 -2.7660 -0.9555 13 6 6.4858 -2.4469 -0.3215 14 6 7.6122 -2.6070 -1.3445 15 6 7.6382 -4.0499 -1.8529 16 6 7.3730 -1.6566 -2.5193 17 6 8.9315 -2.2791 -0.6943 18 1 8.9635 -1.9861 0.3447 19 6 10.0979 -2.3529 -1.4258 20 7 10.0589 -2.7091 -2.6912 21 14 11.7334 -1.9471 -0.6197 22 1 12.3158 -3.1807 -0.0331 23 1 12.6637 -1.3960 -1.6376 24 1 11.5208 -0.9417 0.4524 25 1 -0.3634 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6542 2.1323 -0.0006 29 1 4.1174 2.1342 0.0001 30 1 5.3478 0.0037 0.0014 31 1 0.8657 -2.7324 -0.7106 32 1 1.3630 -2.9120 0.9990 33 1 2.8908 -3.6263 -1.5229 34 1 2.8908 -4.4447 0.0751 35 1 5.0479 -2.1946 -1.7732 36 1 6.4671 -1.4192 0.0410 37 1 6.6564 -3.1243 0.5153 38 1 6.6839 -4.2866 -2.3233 39 1 8.4404 -4.1638 -2.5820 40 1 7.8086 -4.7270 -1.0158 41 1 7.3544 -0.6287 -2.1572 42 1 8.1758 -1.7703 -3.2479 43 1 6.4187 -1.8933 -2.9897 44 1 10.8794 -2.7607 -3.2061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414166311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:38 Heat of formation + Delta-G solvation = 10.006994 kcal Electronic energy + Delta-G solvation = -21418.067249 eV Core-core repulsion = 18527.171989 eV Total energy + Delta-G solvation = -2890.895260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26152 -37.01181 -35.54564 -33.40912 -32.25622 -30.44478 -28.90368 -26.73988 -26.09743 -25.53458 -25.16699 -23.29832 -21.89557 -20.85170 -19.75324 -18.40601 -16.42732 -15.94108 -15.48427 -15.00402 -14.98241 -14.62703 -14.13714 -13.74062 -13.40249 -13.27850 -12.84902 -12.47453 -12.41609 -12.26000 -12.06180 -11.93891 -11.59496 -11.36683 -11.15952 -11.06504 -10.94571 -10.77194 -10.65966 -10.59872 -10.52189 -10.15637 -10.03647 -9.36650 -9.02367 -8.63101 -8.54223 -8.44217 -8.26616 -7.61034 -5.89239 -3.99612 1.46002 1.47305 3.32423 3.39364 3.42156 3.81730 4.44973 4.52294 4.62037 4.92765 4.95438 5.03586 5.22928 5.27440 5.36161 5.37430 5.43595 5.49843 5.69206 5.70632 5.75639 5.77549 5.91657 6.11847 6.15331 6.26367 6.33083 6.39397 6.43572 6.61393 6.66699 6.75354 6.81052 6.92900 7.10674 7.13060 7.19996 7.40685 7.50207 7.76214 7.78272 7.85624 8.00588 8.23745 8.37053 8.58097 9.01901 9.65344 11.11195 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.004387 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.229785 B = 6380.839856 C = 6934.813932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.096 4.096 8 C -0.080 4.080 9 C -0.106 4.106 10 C 0.123 3.877 11 H 0.086 0.914 12 N -0.674 5.674 13 C 0.072 3.928 14 C 0.069 3.931 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.341 0.659 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.083 0.917 43 H 0.010 0.990 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 3.651 4.305 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.097 4.097 8 C -0.118 4.118 9 C -0.144 4.144 10 C 0.012 3.988 11 H 0.104 0.896 12 N -0.304 5.304 13 C -0.056 4.056 14 C 0.068 3.932 15 C -0.176 4.176 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.029 0.971 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.109 2.923 4.236 17.867 hybrid contribution 0.999 1.420 0.582 1.831 sum -16.111 4.343 4.819 17.368 Atomic orbital electron populations 1.20740 0.91695 1.02428 1.01918 1.19396 0.95580 0.92051 1.01211 1.20869 0.94260 0.96953 1.02229 1.21029 0.94169 0.97801 1.00636 1.20847 1.00488 0.91336 0.99773 1.21563 0.94555 0.96566 0.99095 1.20467 0.94224 0.94421 1.00541 1.21049 0.98559 0.90635 1.01521 1.22313 0.92132 0.97739 1.02222 1.21206 0.92126 0.88156 0.97327 0.89571 1.60773 1.01379 1.60314 1.07922 1.22263 0.88349 0.96884 0.98127 1.18094 0.90893 0.93136 0.91071 1.21637 0.99336 0.96682 0.99994 1.21820 0.98915 0.97240 1.00890 1.21107 0.91134 1.45532 0.96697 0.93060 1.24879 0.98663 0.95167 0.94825 1.69839 1.27097 1.48169 1.07219 0.86675 0.84135 0.78510 0.79108 1.20809 1.21349 1.20129 0.91552 0.91915 0.91693 0.86358 0.86109 0.85721 0.91057 0.90578 0.90326 0.90562 0.83964 0.96515 0.92652 0.96120 0.90794 0.96343 0.96290 0.89872 0.97126 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.87 36.00 0.36 -0.66 16 2 C -0.08 -1.01 5.88 -104.58 -0.62 -1.63 16 3 C -0.12 -1.53 9.69 -39.63 -0.38 -1.92 16 4 C -0.12 -1.60 10.05 -39.63 -0.40 -2.00 16 5 C -0.11 -1.65 9.71 -39.58 -0.38 -2.03 16 6 C -0.12 -1.75 5.51 -104.19 -0.57 -2.33 16 7 C -0.10 -1.28 6.01 -104.14 -0.63 -1.91 16 8 C -0.08 -0.90 6.27 -26.85 -0.17 -1.07 16 9 C -0.11 -1.34 6.77 -25.32 -0.17 -1.51 16 10 C 0.12 1.87 3.18 -67.83 -0.22 1.65 16 11 H 0.09 1.35 7.84 -51.93 -0.41 0.94 16 12 N -0.67 -12.11 5.48 -106.85 -0.59 -12.69 16 13 C 0.07 1.50 4.36 -3.82 -0.02 1.48 16 14 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 15 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 16 C -0.13 -3.11 7.92 37.16 0.29 -2.82 16 17 C -0.51 -13.63 8.01 -34.44 -0.28 -13.91 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 19 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 20 N -0.88 -24.57 9.35 55.43 0.52 -24.05 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 28 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.12 2.08 5.99 -52.49 -0.31 1.77 16 31 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.34 6.30 6.51 -39.29 -0.26 6.04 16 36 H 0.02 0.35 5.81 -51.93 -0.30 0.05 16 37 H 0.05 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 39 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 2.20 6.07 -51.93 -0.31 1.88 16 43 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -27.73 337.23 -10.24 -37.97 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.18 Total: 5.50 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -3.06 Total: -27.99 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.73 -10.24 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.980 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds