Wall clock time and date at job start Mon Mar 30 2020 20:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38147 * 119.89298 * 2 1 4 4 C 1.38206 * 119.93878 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.93668 * 0.02562 * 4 3 2 6 6 C 1.38315 * 120.25611 * 359.90605 * 5 4 3 7 7 C 1.38429 * 119.83427 * 0.18151 * 6 5 4 8 8 C 1.51367 * 109.77963 * 179.86254 * 7 6 5 9 9 C 1.54342 * 105.17242 * 342.72977 * 8 7 6 10 10 C 1.51371 * 130.50807 * 179.85137 * 6 5 4 11 11 H 1.08998 * 110.30351 * 78.40541 * 10 6 5 12 12 N 1.46895 * 110.30323 * 316.34519 * 10 6 5 13 13 C 1.46906 * 110.99789 * 87.77470 * 12 10 6 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47454 * 300.00316 * 14 13 12 16 16 C 1.52997 * 109.46978 * 60.00394 * 14 13 12 17 17 C 1.50696 * 109.46999 * 179.97438 * 14 13 12 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00355 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99521 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00556 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47278 * 89.99815 * 21 19 17 23 23 H 1.48498 * 109.47109 * 210.00244 * 21 19 17 24 24 H 1.48502 * 109.46821 * 329.99631 * 21 19 17 25 25 H 1.09007 * 109.47129 * 270.01857 * 1 2 3 26 26 H 1.09002 * 109.47352 * 30.02221 * 1 2 3 27 27 H 1.09003 * 109.47211 * 150.02183 * 1 2 3 28 28 H 1.08003 * 120.03048 * 359.96096 * 3 2 1 29 29 H 1.08006 * 120.03420 * 179.97438 * 4 3 2 30 30 H 1.07993 * 119.89799 * 180.02562 * 5 4 3 31 31 H 1.08997 * 110.30349 * 223.79876 * 8 7 6 32 32 H 1.09006 * 110.30076 * 101.65385 * 8 7 6 33 33 H 1.09003 * 110.81848 * 268.12707 * 9 8 7 34 34 H 1.08996 * 110.81880 * 144.58279 * 9 8 7 35 35 H 1.00899 * 111.00672 * 323.82415 * 12 10 6 36 36 H 1.08992 * 109.47459 * 299.99826 * 13 12 10 37 37 H 1.09004 * 109.47040 * 59.99976 * 13 12 10 38 38 H 1.09002 * 109.47067 * 59.99861 * 15 14 13 39 39 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46930 * 299.99944 * 15 14 13 41 41 H 1.08998 * 109.47624 * 59.99457 * 16 14 13 42 42 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47045 * 299.99833 * 16 14 13 44 44 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5775 1.1988 0.0005 5 6 4.2679 0.0022 0.0005 6 6 3.5813 -1.1986 0.0020 7 6 2.1970 -1.2003 -0.0004 8 6 1.6866 -2.6253 -0.0016 9 6 2.8903 -3.4852 -0.4420 10 6 4.0923 -2.6234 -0.0007 11 1 4.4167 -2.9107 0.9994 12 7 5.1995 -2.7660 -0.9555 13 6 6.4858 -2.4469 -0.3215 14 6 7.6122 -2.6070 -1.3445 15 6 7.6382 -4.0499 -1.8529 16 6 7.3730 -1.6566 -2.5193 17 6 8.9315 -2.2791 -0.6943 18 1 8.9635 -1.9861 0.3447 19 6 10.0979 -2.3529 -1.4258 20 7 10.0589 -2.7091 -2.6912 21 14 11.7334 -1.9471 -0.6197 22 1 12.3158 -3.1807 -0.0331 23 1 12.6637 -1.3960 -1.6376 24 1 11.5208 -0.9417 0.4524 25 1 -0.3634 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6542 2.1323 -0.0006 29 1 4.1174 2.1342 0.0001 30 1 5.3478 0.0037 0.0014 31 1 0.8657 -2.7324 -0.7106 32 1 1.3630 -2.9120 0.9990 33 1 2.8908 -3.6263 -1.5229 34 1 2.8908 -4.4447 0.0751 35 1 5.0479 -2.1946 -1.7732 36 1 6.4671 -1.4192 0.0410 37 1 6.6564 -3.1243 0.5153 38 1 6.6839 -4.2866 -2.3233 39 1 8.4404 -4.1638 -2.5820 40 1 7.8086 -4.7270 -1.0158 41 1 7.3544 -0.6287 -2.1572 42 1 8.1758 -1.7703 -3.2479 43 1 6.4187 -1.8933 -2.9897 44 1 10.8794 -2.7607 -3.2061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414166311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:37 Heat of formation + Delta-G solvation = -3.021705 kcal Electronic energy + Delta-G solvation = -21418.632216 eV Core-core repulsion = 18527.171989 eV Total energy + Delta-G solvation = -2891.460226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31693 -38.58348 -36.89203 -34.75895 -33.60416 -32.13677 -29.90476 -27.77566 -27.51991 -27.33093 -27.14084 -24.90039 -22.89442 -21.87321 -20.89424 -20.28149 -17.89800 -17.54973 -16.79206 -16.54864 -16.09377 -15.96378 -15.41681 -15.09174 -14.82897 -14.38598 -14.19515 -13.92815 -13.82227 -13.51235 -13.17645 -13.05568 -12.98863 -12.88357 -12.70752 -12.64690 -12.42567 -12.27392 -12.15529 -12.07637 -12.03695 -11.73224 -11.66022 -11.32532 -10.87393 -10.61339 -10.35297 -9.66689 -9.43112 -9.03571 -7.97237 -6.14210 0.42489 0.45027 1.41045 1.42950 1.51308 2.45598 2.78712 3.24651 3.37682 3.55990 3.78625 4.04962 4.09742 4.17940 4.30303 4.36381 4.47338 4.56683 4.65154 4.70068 4.74160 4.81579 4.86616 4.88518 4.95157 5.03395 5.06087 5.16124 5.16886 5.21834 5.27496 5.32107 5.38292 5.43288 5.52913 5.60963 5.64028 5.68950 5.75013 5.76436 6.13752 6.17525 6.25421 6.33176 6.48334 6.61482 6.94905 7.53259 9.00945 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.004387 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.229785 B = 6380.839856 C = 6934.813932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.137 4.137 7 C -0.103 4.103 8 C -0.072 4.072 9 C -0.100 4.100 10 C 0.119 3.881 11 H 0.077 0.923 12 N -0.672 5.672 13 C 0.089 3.911 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.117 4.117 17 C -0.526 4.526 18 H 0.042 0.958 19 C 0.023 3.977 20 N -0.903 5.903 21 Si 0.944 3.056 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.274 1.274 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.337 0.663 36 H 0.011 0.989 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.010 0.990 41 H 0.013 0.987 42 H 0.056 0.944 43 H 0.029 0.971 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.748 4.015 4.795 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.103 4.103 8 C -0.109 4.109 9 C -0.138 4.138 10 C 0.009 3.991 11 H 0.095 0.905 12 N -0.301 5.301 13 C -0.040 4.040 14 C 0.060 3.940 15 C -0.162 4.162 16 C -0.175 4.175 17 C -0.565 4.565 18 H 0.061 0.939 19 C -0.176 4.176 20 N -0.542 5.542 21 Si 0.771 3.229 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.542 3.284 4.734 20.374 hybrid contribution 1.704 1.343 0.442 2.214 sum -17.838 4.626 5.175 19.141 Atomic orbital electron populations 1.20802 0.89040 1.03640 1.03069 1.19836 0.97552 0.91492 0.99582 1.21237 0.93716 0.98390 1.00968 1.21236 0.95189 0.97540 1.00578 1.20813 0.99490 0.92734 1.02024 1.21551 0.95757 0.95961 1.00587 1.20789 0.93431 0.96050 1.00054 1.21058 0.98186 0.88683 1.02971 1.22294 0.91396 0.98112 1.02041 1.21320 0.92077 0.89459 0.96279 0.90468 1.60739 1.01060 1.60015 1.08309 1.21903 0.88994 0.96304 0.96825 1.18139 0.91199 0.92873 0.91819 1.21461 0.99013 0.96783 0.98980 1.21627 0.98815 0.96908 1.00113 1.21412 0.92772 1.45788 0.96535 0.93921 1.25524 1.01524 0.95173 0.95350 1.69968 1.27669 1.48514 1.08036 0.85785 0.80587 0.78283 0.78294 1.20464 1.20976 1.19899 0.90271 0.90523 0.90760 0.83587 0.84932 0.88216 0.88986 0.88934 0.90807 0.89266 0.84357 0.97126 0.93590 0.94689 0.93298 0.97050 0.96770 0.92512 0.95217 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.87 71.23 0.70 -0.85 16 2 C -0.08 -1.84 5.88 -19.84 -0.12 -1.96 16 3 C -0.13 -2.79 9.69 22.24 0.22 -2.57 16 4 C -0.13 -3.37 10.05 22.24 0.22 -3.15 16 5 C -0.13 -4.19 9.71 22.27 0.22 -3.97 16 6 C -0.14 -4.09 5.51 -19.59 -0.11 -4.20 16 7 C -0.10 -2.53 6.01 -19.55 -0.12 -2.65 16 8 C -0.07 -1.39 6.27 30.52 0.19 -1.20 16 9 C -0.10 -2.35 6.77 31.51 0.21 -2.13 16 10 C 0.12 3.58 3.18 44.84 0.14 3.73 16 11 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 12 N -0.67 -24.24 5.48 -491.96 -2.69 -26.94 16 13 C 0.09 3.78 4.36 86.30 0.38 4.16 16 14 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 15 C -0.10 -5.19 8.09 71.98 0.58 -4.61 16 16 C -0.12 -5.66 7.92 71.98 0.57 -5.09 16 17 C -0.53 -28.99 8.01 25.60 0.21 -28.78 16 18 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 19 C 0.02 1.28 5.15 84.65 0.44 1.72 16 20 N -0.90 -51.03 9.35 21.45 0.20 -50.83 16 21 Si 0.94 43.96 29.54 68.60 2.03 45.99 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.07 0.94 7.29 -2.39 -0.02 0.92 16 28 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.10 3.56 5.99 -2.91 -0.02 3.54 16 31 H 0.09 1.44 7.62 -2.39 -0.02 1.42 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.34 12.52 6.51 -89.69 -0.58 11.94 16 36 H 0.01 0.46 5.81 -2.39 -0.01 0.45 16 37 H 0.05 2.02 8.07 -2.38 -0.02 2.00 16 38 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 39 H 0.05 2.66 6.07 -2.39 -0.01 2.65 16 40 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 43 H 0.03 1.28 6.57 -2.39 -0.02 1.26 16 44 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -60.05 337.23 3.63 -56.42 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.39 Total: 23.96 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 3.70 Total: -48.61 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.49 Total: -77.77 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -60.05 3.63 -56.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.403 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds